|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1318 fasta sequence
[TTGAATGCTCTTTTGGGTGGATTGAGTGTGTTGGGATTGCTGATAGGTCTGCATATGATCTGCGTGCTCACTCGGATAAAAGTGGTGTTGCACTTGAAGCACATGAAAAGTTTGCAGAGCCTAGAGAAGTGGAGAAGTTAGTTATAACCCCGTCAAAGAAGGAACTAGGTCTTGCGTTCAAAGGGAATCAAAGGATGGTTCTTGAAGCATTGGAGGCAATGAGCGAGACTGAAGCTTTGAATATGAAATCAGCTTTAGAATCCAAAGGGGAGGTTGAATTTAAGGTGTGTACACTTGGGAAAGATGTCACCATAAAGAAAAGCATGGTTTCAATTAACATGGAGAAGAAAAAGGAACATCAAAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG-CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG-CCATCCTGCTTTT-CTGATACATGTTTTAACAGAATGCTAATGCAG-CATTGAGCATTGTTCTGTAATCT-CGATGATTTCTCTACATATTTACAGATGA-TTTTCT-CCTGTTTACTG-TTGATATTTGGCGT-GGTCTA-CCACATAGTT-CCCTGTACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGAGTATCAGTCTTTACATTGTCATATTGTTGATTCTCTGCGAAAAATACTAGAGCTATTCATGTCGGTTTTATGTACACAACTACTTCATGAGTTCCAAAATATAAGGTGTCAATATTTTTAGGAAAAAACAATATTTGTAACCTTTGACTGATATAATTGAATTAAGTGTATATATGTT]
[+] EMBL AK061199 [TTGAATGCTCTTTTGGGTGGATTGAGTGTGTTGGGATTGCTGATAGGTCTGCATATGATCTGCGTGCTCACTCGGATAAAAGTGGTGTTGCACTTGAAGCACATGAAAAGTTTGCAGAGCCTAGAGAAGTGGAGAAGTTAGTTATAACCCCGTCAAAGAAGGAACTAGGTCTTGCGTTCAAAGGGAATCAAAGGATGGTTCTTGAAGCATTGGAGGCAATGAGCGAGACTGAAGCTTTGAATATGAAATCAGCTTTAGAATCCAAAGGGGAGGTTGAATTTAAGGTGTGTACACTTGGGAAAGATGTCACCATAAAGAAAAGCATGGTTTCAATTAACATGGAGAAGAAAAAGGAACATCAAAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCT ]
[-] EMBL CB629781 [ ATGGAGAAGAAAAAGGAACATCAAAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTTGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG TTGATATTTGGCGT GGTCTA CCACATAGTT CCCTGTACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGAGTATCAGTCTT ]
[-] EMBL CB644405 [ AAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTTGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG TTGATATTGGGCGT GGTCTA CCACATA ]
[-] EMBL CB654281 [ AGAATCATTTACTGTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG TTGATATTTGGCGT GGTCTA CCACATAGTT CCCTGTACTTGGTTTTGCACATGAATGTTTGTACCGTGTCCTTTTAGGGTTGAAGGTCATTCTAGAG ]
[-] EMBL CB622721 [ AGGATGAGCAGTTGAATGTATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGATCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTTCTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTTGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG AAGGTATTTGGCGT GGTCTA CCACATAGTT CCCTGTAtaaa ]
[+] EMBL AK059136 [ ATCGGTAAGCGTTATGCAAGGACCGATGAAATCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTT ]
[-] EMBL CB638228 [ AGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAATTGAGATGGTTGTTG CCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAG CATTGAGCATTGTTCTGTAATCT CGATGATTTCTCTACATATTTACAGATGA TTTTCT CCTGTTTACTG TTGATATTTGGCGT GGTCTA CCACATAGTT CCCTGTACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGAGTATCAGTCTTTACATTGTCATATTGTTGATTCTCTGCGAAAAATACTAGAGCTATTCATGTCGGTTTTATGTACACAACTACTTCATGAGTTCCAAAATATAAGGTGTCAATATTTTTAGGAAAAAACAATATTTGTAACCTTTGACTGATATAATTGAATTAAGTGTATATATGTT]
[+] EMBL AU173071 [ CAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTNAANAGGAGGAAGCATCAGAAACCTNAAGGGGGCAAGCAGTGCAGTGCAAGCCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCCATCCTGCTTTT CTGATACATGTTTTAACAGAATGCTAATGCAGCCATTGAGCATTGTTCTGTAATCTCCGATGATTTCTCTACATATTTACAGATGATTTTTCTCCCTGTTTACTGTTTGATATTTGGCGTGGGTCTACCCACATAGTTCCCCTGTACTTGG TTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGAGTATCAGTCTTTACATTGTCAaaaaaa ]
[-] EMBL CB637576 [ AAGGAAGCGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAG CCAAAACCTCTGGCTGGAAATGAGATGGTTGTTG CCATCCTGCTTTTCCTGACACATGTTTTAACAGAATGCTAAAAAAA CAATAAGCATTGTTCTGT ]
consensusID : consensus_12971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence
[ATATACAGGTANACAATCGGTAACCGTTATGCAAGGNCCGATGAAATCGTTGNCCCCCTGGCAATCACGGTTGACAACA-CCACGAGTGTGACTGNCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAANCAGTGCAGTGCAAGCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAACAGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTACAGATGATTTTCTCCTGTTTACTGTTAAAAAAAAAAAAAA]
[+] EMBL AU033135 [ATATACAGGTANACAATCGGTAACCGTTATGCAAGGNCCGATGAAATCGTTGNCCCCCTGGCAATCACGGTTGACAACA CCACGAGTGTGACTGNCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAANCAGTGCAGTGCAAGCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAACAGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTACAGATGATTTTCTCCTGTTTACTGTTAAAAAAAAAAAAA ]
[+] EMBL AU097188 [ CAACACCCACGAGTGTGACTGTCCGTGACCGGGACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAANCAGTGCAGTGCAAGCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCANCCTGCTTTTCTGATACATGTTTTAACAGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTACAGATGATTTTCTCCTGTTTACTGTTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12971#0 TTGAATGCTCTTTTGGGTGGATTGAGTGTGTTGGGATTGCTGATAGGTCTGCATATGATC 60
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 TGCGTGCTCACTCGGATAAAAGTGGTGTTGCACTTGAAGCACATGAAAAGTTTGCAGAGC 120
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 CTAGAGAAGTGGAGAAGTTAGTTATAACCCCGTCAAAGAAGGAACTAGGTCTTGCGTTCA 180
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 AAGGGAATCAAAGGATGGTTCTTGAAGCATTGGAGGCAATGAGCGAGACTGAAGCTTTGA 240
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 ATATGAAATCAGCTTTAGAATCCAAAGGGGAGGTTGAATTTAAGGTGTGTACACTTGGGA 300
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 AAGATGTCACCATAAAGAAAAGCATGGTTTCAATTAACATGGAGAAGAAAAAGGAACATC 360
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 AAAGGAAATTTACTCCTTCTGTCATAGAGCCATCCTTTGGCATAGGGAGAATCATTTACT 420
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 GTCTGTTCGAACATTGCTTCTATCAAAGACCTGGCAAGGCGGAGGATGAGCAGTTGAATG 480
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 TATTCGGTTTCCCCCCTCTTGTTGCTCCCATCAAGTGCACTGTCTTTCCACTTGTCAAGA 540
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 TCGAAAAATTTGAAGTTGTTGCCAAGAAAATTTCGAAAGCATTGACAGCAGCAGGGATTT 600
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 CTCACATAATTGATATGACAGGTAACACAATCGGTAAGCGTTATGCAAGGACCGATGAAA 660
consensus_12971#1 ------------ATAT-ACAGGTAN-ACAATCGGTAACCGTTATGCAAGGNCCGATGAAA 46
**** ******* *********** ************ *********
consensus_12971#0 TCGGTGTCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGTCCGTGACCGGG 720
consensus_12971#1 TCGTTGNCCCCCTGGCAATCACGGTTGACAACACCACGAGTGTGACTGNCCGTGACCGGG 106
*** ** ***************************************** ***********
consensus_12971#0 ACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGA 780
consensus_12971#1 ACAGCAAGGATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGA 166
************************************************************
consensus_12971#0 CGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGG 840
consensus_12971#1 CGGACGGGCAGAGCACCTGGGCAGACATCATGTGGAGGTACCCGGCACATACTGCCTCGG 226
************************************************************
consensus_12971#0 CCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCAGTGCAAGCCAA 900
consensus_12971#1 CCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAANCAGTGCAGTGCAAGCCAA 286
***************************************** ******************
consensus_12971#0 AACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAAC 960
consensus_12971#1 AACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAAC 346
************************************************************
consensus_12971#0 AGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTA 1020
consensus_12971#1 AGAATGCTAATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTA 406
************************************************************
consensus_12971#0 CAGATGATTTTCTCCTGTTTACTGTTGATATTTGGCGTGGTCTACCACATAGTTCCCTGT 1080
consensus_12971#1 CAGATGATTTTCTCCTGTTTACTGTTAAAAAAAAAAAAAA-------------------- 446
************************** * *
consensus_12971#0 ACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGAAGGTCATTCTAGA 1140
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 GTATCAGTCTTTACATTGTCATATTGTTGATTCTCTGCGAAAAATACTAGAGCTATTCAT 1200
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 GTCGGTTTTATGTACACAACTACTTCATGAGTTCCAAAATATAAGGTGTCAATATTTTTA 1260
consensus_12971#1 ------------------------------------------------------------
consensus_12971#0 GGAAAAAACAATATTTGTAACCTTTGACTGATATAATTGAATTAAGTGTATATATGTT 1318
consensus_12971#1 ----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||