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Oryza sativa
cluster # 12974 cluster # 12974       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12974#0 length = 1655 sequences # 9  
consensus_12974#1 length = 788 sequences # 1  
consensus_12974#2 length = 314 sequences # 1  

consensusID : consensus_12974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1655
fasta sequence
                              [GGCGGCGGCGGCGGAGCGGGAGGCGGCGACGACCTTGATGTGGAGTTCGAGCTGCCCACTGACCCGCTGCCCCCGACCTACGACACCGCGCTCGACGTCGGGCCCGGCGGCCGCCCACTCTTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTCGATTTCACCTTGGATGAATGGAAAGCTATGTTACCAGAGGGATTGCCAGCCGGCATGATGAAGGAGTTTCAGGAGACAAGACGGTGTGCTGTGATGGTGAGAGAGAGCTTCCTAGACCTACGGGATAACTTCCGAAGAATTGTTGATCCAGCTATTGCTGCCAAACGAAAAGATGCCAAAAGACAAATTGTATTAGATGGTCCCCGGAGCTGCGGTAAAAGCATTGCACTTGCAATGCTTGTCCACTGGGCACGTACTGAAGGATGGCTAGTATTTTATGTTCCACAAGGGAAGGATTGGTCACATGGAGGATTCTTCTATAGAAACACCTACAATGATCTCTTTGATACTCCAATACAGGCTGCAAAGATCTTACAGGATTTCTTGAAGTACAATGAAAACCGCTTGCAGCAGTTACCATGTCAAATATTTGAGCCTATTCCCTTGGGGGAAGGTGCTGGTGTTGGAATGATGAAGGGGGCTGACACAGTGGAAATGCCTGAAGGTTCGACACTGTAT-GATCTCATTCAAACT-GGGATAACACATTCGCATGCTTCAGTTGGTGTTGTAGTT-CGTTTAAGGAA--GGAATTGTCAC-TTGT-GAAAGATGTT-CCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTCCAGGAACCGGTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGTCAATGTTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAACTGCAGTTGGAAAATTACGACAGGACCT-CCCAGATGTT-CCATCAGATG-CT-CGTGTGATGTTTCCACGGTA-CACTGT-AAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGATCATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGGAAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCCGGATTGCTTCTGCCAAAGAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAGGTTTTAAACTGAAGCCATCCATTGTTGTATACTTGCAGTACACATCTTGTAAAACTCGTAGGAGCAAGGTGCTACCTAATGACGGTTCTATGATTTTTTTATTTCTACCCCAGTAATTTGAAGTGCGAGCAATTTTGGCAGCAGCATAAAAATTTCACCCATGTGCCTGACGACGACGTTGATGTGTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGTGACGCAGTTCTGCCCATTTATATTTGATGAATTTTGAGGTGCGTTGCTTAGTGACGCAGGATACAATAAGAACTGGCTGCTCTTAACTTTCTTTCTGGTACAGCTTCCATTTACTCTTTTTTTTTTATCAAATACTGTTGCTGTTTGCGATCGTTTAAAAAAAA]

[+] EMBL AK065624             [GGCGGCGGCGGCGGAGCGGGAGGCGGCGACGACCTTGATGTGGAGTTCGAGCTGCCCACTGACCCGCTGCCCCCGACCTACGACACCGCGCTCGACGTCGGGCCCGGCGGCCGCCCACTCTTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTCGATTTCACCTTGGATGAATGGAAAGCTATGTTACCAGAGGGATTGCCAACCGGCATGATGAAGGAGTTTCAGGAGACAAGACGGTGTGCTGTGATGGTGAGAGAGAGCTTCCTAGACCTACGGGATAACTTCCGAAGAATTGTTGATCCAGCTATTGCTGCCAAACGAAAAGATGCCAAAAGACAAATTGTATTAGATGGTCCCCGGAGCTGCGGTAAAAGCATTGCACTTGCAATGCTTGTCCACTGGGCACGTACTGAAGGATGGCTAGTATTTTATGTTCCACAAGGGAAGGATTGGTCACATGGAGGATTCTTCTATAGAAACACCTACAATGATCTCTTTGATACTCCAATACAGGCTGCAAAGATCTTACAGGATTTCTTGAAGTACAATGAAAACCGCTGGCAGCAGTTACCATGTCAAATATTTGAGCCTATTCCCTTGGGGGAAGGTGCTGGTGTTGGAATGATGAAGGGGGCTGACACAGTGGAAATGCCTGAAGGTTCGACACTGTAT GATCTCATTCAAACT GGGATAACACATTCGCATGCTTCAGTTGGTGTTGTAGTT CGTTTAAGGAA  GGAATTGTCAC TTGT GAAAGATGTT CCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTCCAGGAACCGGTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGTCAATGTTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAACTGCAGTTGGAAAATTACGACAGGACCT CCCAGATGTT CCATCAGATG CT CGTGTGATGTTTCCACGGTA CACTGT AAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGATCATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGGAAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCCGGATTGCTTCTGCCAAAGAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAGGTTTTAAACTGAAGCCATCCATTGTTGTATACTTGCAGTACACATCTTGTAAAACTCGTAGGAGCAAGGTGCTACCTAATGACGGTTCTATGATTTTTTTATTTCTACCCCAGTAATTTGAAGTGCGAGCAATTTTGGCAGCAGCATAAAAATTTCACCCATGTGCCTGACGACGACGTTGATGTGTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGTGACGCAGTTCTGCCCATTTATATTTGATGAATTTTGAGGTGCGTTGCTTAGTGACGCAGGATACAATAAGAACTGGCTGCTCTTAACTT                                                                           ]
[+] EMBL CA998028             [                                CCTTGATGTGGAGTTCGAGCTGCCCACTGACCCGCTGCCCCCGACCTACGACACCGCGCTCGACGTCGGGCCCGGCGGCCGCCCACTCTTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTCGATTTCACCTTGGATGAATGGAAAGCTATGTTACCAGAGGGATTGCCAGCCGGCATGATGAAGGAGTTTCAGGAGACAAGACGGTGTGCTGTGATGGTGAGAGAGAGCTTCCTAGACCTACGGGATAACTTCCGAAGAATTGTTGATCCAGCTATTGCTGCCAAACGAAAAGATGCCAAAAGACAAATTGTATTAGATGGTCCCCGGAGCTGCGGTAAAAGCATTGCACTTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB000891             [                                                                                                   GGGCCCGGCGGCCGCCCACTCTTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTCGATTTCACCTTGGATGAATGGAAAGCTATGTTACCAGAGGGATTGCCAGCCGGCATGATGAAGGAGTTTCAGGAGACAAGACGGTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU162182             [                                                                                                                           GCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTCGATTTCACCTTGGATGAATGGAAAGCTATGTTACCAGAGGGATTGCCAGCCGGCATGATGAAGGAGTTTCAGGAGACAAGACGGTGTGCTGTGATGGTGAGAGAGAGCTTCCTAGACCTACGGGATAACTTCCGAAGAATTGTTGATCCAGCTATTGCTGCCAAACGAAAAGATGCCAAAAGACAAATTGTATTAGATGGTCCCCGGAGCTGCGGTAAAAGCATTGCACTTGCAATGCTTGTCCACTGGGCACGTACTGAAGGATGGCTAGTATTTTATGTTCCACAAGGGAAGGATTGGTCACATGGAGGATTCTTCTATAGAAACACCTACAATGATCTCTTTGATACTCCAATACAGGCTGCAAAGATCTTACAGGATTTCTTGAAGTACAATGAAAACCGCTTGCAGCAGTTACCATGTCAAATATTTGAGCCTATTCCCTTGGGGGAAGGTGCTGGTGTTGGAATGATGAAGGGGGCTGACACAGTGGAAATGCCTGAAGGTTCGACACTGTAT GATCTCATTCAAACT GGGATAACACATTCGCATGCTTCAGTTGGTGTTGTAGTT C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC100391            [                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGTATTTTATGTTCCACAAGGGAAGGATTGGTCACATGGAGGATTCTTCTATAGAAACACCTACAATGATCTCTTTGATACTCCAATACAGGCTGCAAAGATCTTACAGGATTTCTTGAAGTACAATGAAAACCGCTTGCAGCAGTTACCATGTCAAATATTTGAGCCTATTCCCTTGGGGGAAGGTGCTGGTGTTGGAATGATGAAGGGGGCTGACACAGTGGAAATGCCTGAAGGTTCGACACTGTATGGATCTCATTCAAACTGGGGATAACACATTCGCATGCTTCAGTTGGTGTTGTAGTTCCGTTTTAGGGAGGGGAATTGTCACTTTGTGGAAAGATGTTCCCCGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF307491             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTTATGTTCCAC AGGGAAGGATTGGTCACATGGAGGATTCTTCTATAGAAACACCTACAATGATCTCTTTGATACTCCAATACAGGCTGCAAAGATCTTACAGGATTTCTTGAAGTACAATGAAAACCGCTTGCAGCAGTTACCATGTCAAATATTTGAGCCTATTCCCTTGGGGGAAGGTGCTGGTGTTGGAATGATGAAGGGGGCTGACACAGTGGAAATGCCTGAAGGTTCGACACTGTAT GATCTCATTCAAACT GGGATAACACATTCGCATGCTTCAGTTGGTGTTGTAGTT CGTTTAAGGAA  GGAATTGTCAC TTGT GAAAGATGTT CCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTCCAGGAACCGGTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGTCAATGTTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAACTGCAGTTGGAAAATTACGACAGGACCT CCCAGATGTT CCATCAGATG CT CGTGTGATGTTTCCACGGTA CACTGT AAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB642794             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTCCAGGAACCGGTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGTCAATGTTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAACTGCAGTTGGAAAATTACGACAGGACCT CCCAGATGTT CCATCAGATG CT CGTGTGATGTTTCCACGGTA CACTGT AAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGATCATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGGAAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCCGGATTGCTTCTGCCAAAGAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAGGTTTTAAACTGAAGCCATCCATTGTTGTATACTTGCAGTACACATCTTGTAAAACTCGTAGGAGCAAGGTGCTACCTAATGACGGTTCTATGATTTTTTTATTTCTACCCCAGTAATTTGAAGTGCGAGCAATTTTGGCAGCAGCATAAAAATTTCACCCATGTGCCTGACGACGACGTTGATGTGTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGTGACGCAGTTCTGCCCATTTATATTTGATGAATTTTGAGGTGCGTTGCTTAGTGACGCAGGATACAATAAGAACTGGCTGCT                                                                                   ]
[+] EMBL AU075981             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCAGTTGGAAAATTACGACAGGACCTCCCCAGATGTTCCCATCAGATGNCTCCGTGTGATGTTTCCACGGTACCACTGTAAAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGNTCATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGGAAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCCGGATTGCTTCTGCCAAAGAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAGGTTTTAAACTGAAGCCATCCATTGTTGTATACTTGCAGTACACATCTTGTAAAACTCGTAGGAGCAAGGTGCTACCTAATGACGGTTCTATGATTTTTTTATTTCTACCCCAGTAATTTGAAGTGCGAGCAATTTTGGCAGCAGCATAAAAATTTCACCCATGTGCCTGACGACGACGTTGATGTGTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGTGACGCAGTTCTGCCCATTTATATTTGATGAATTTTGAGGTGCGTTGCTTAGTGACGCAGGATACAATAAGAACTGGCTGCTCTTAACTTTCTTTCTGGTACAGCTTCCATTTACTCTTTTTTTTTTATCAAATACTGTTGCTGTTTGCGATCGTTTAAAAAAAA]
[+] EMBL C98714               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATACNCGGATTGCTTCT CCCAAG AAAAAAACCCATTGAGTTCATGCAGNCTGTGCAGG TTTAAACTGAAGCCATCCATTGTTGTATACTTGCAGTACACATCTTGTAAAACTCGTAGGAGCAAGNTGCTACNTAATGACGGTTCTATGATTTTTTTATTTCTACCCCAGTAATTTGAAGTGCGAGCAATTTTGGCAGCAGCATAAAAATTTCACCCATGTGCCTGACGACGACGTTGATGTGTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGTGNCGCAGTTCTGCCCATTTATATTTGATGAATTTTGAGGTGCGTTGCTTAGTGACGCAGGATACAATAAGAACTGGCTGCTCTTAACTTTCaaaaa                                                                    ]


>consensus_12974#0 GGCGGCGGCGGCGGAGCGGGAGGCGGCGACGACCTTGATGTGGAGTTCGAGCTGCCCACT GACCCGCTGCCCCCGACCTACGACACCGCGCTCGACGTCGGGCCCGGCGGCCGCCCACTC TTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTCGAT TTCACCTTGGATGAATGGAAAGCTATGTTACCAGAGGGATTGCCAGCCGGCATGATGAAG GAGTTTCAGGAGACAAGACGGTGTGCTGTGATGGTGAGAGAGAGCTTCCTAGACCTACGG GATAACTTCCGAAGAATTGTTGATCCAGCTATTGCTGCCAAACGAAAAGATGCCAAAAGA CAAATTGTATTAGATGGTCCCCGGAGCTGCGGTAAAAGCATTGCACTTGCAATGCTTGTC CACTGGGCACGTACTGAAGGATGGCTAGTATTTTATGTTCCACAAGGGAAGGATTGGTCA CATGGAGGATTCTTCTATAGAAACACCTACAATGATCTCTTTGATACTCCAATACAGGCT GCAAAGATCTTACAGGATTTCTTGAAGTACAATGAAAACCGCTTGCAGCAGTTACCATGT CAAATATTTGAGCCTATTCCCTTGGGGGAAGGTGCTGGTGTTGGAATGATGAAGGGGGCT GACACAGTGGAAATGCCTGAAGGTTCGACACTGTATGATCTCATTCAAACTGGGATAACA CATTCGCATGCTTCAGTTGGTGTTGTAGTTCGTTTAAGGAAGGAATTGTCACTTGTGAAA GATGTTCCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTC CAGGAACCGGTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGTC AATGTTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAACT GCAGTTGGAAAATTACGACAGGACCTCCCAGATGTTCCATCAGATGCTCGTGTGATGTTT CCACGGTACACTGTAAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGATC ATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGGA AATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCCG GATTGCTTCTGCCAAAGAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAGGTTTTAAA CTGAAGCCATCCATTGTTGTATACTTGCAGTACACATCTTGTAAAACTCGTAGGAGCAAG GTGCTACCTAATGACGGTTCTATGATTTTTTTATTTCTACCCCAGTAATTTGAAGTGCGA GCAATTTTGGCAGCAGCATAAAAATTTCACCCATGTGCCTGACGACGACGTTGATGTGTA CTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGTGACGCAGTT CTGCCCATTTATATTTGATGAATTTTGAGGTGCGTTGCTTAGTGACGCAGGATACAATAA GAACTGGCTGCTCTTAACTTTCTTTCTGGTACAGCTTCCATTTACTCTTTTTTTTTTATC AAATACTGTTGCTGTTTGCGATCGTTTAAAAAAAA



consensusID : consensus_12974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 788
fasta sequence
                              [GGGCTGACACAGTGGAAATGCCTGAAGGTTCGACACTGTATGATCTCATTCAAACTGGGATAACACATTCGCATGCTTCAGTTGGTGTTGTAGTTCGTTTAAGGAAGGAATTGTCACTTGTGAAAGATGTTCCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTCCAGGAACCGGTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGTCAATGCTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAACTGCAGTTGGAAAATTACGACAGGACCTCCCAGATGTTCCATCAGATGCTCGTGTGATGTTTCCGCGGTACACTGTAAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGATCATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGGAAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCCGGATTGCTTCTGCCAAAGAAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAGTAATTTTGAAGTGCGAGCAATTTTGGCAGCAGCATAAAAGTTTCACCCCATGTGCCTGACGACGACGTTGATGTGTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGGGACCGCAGTTCTGCCCATTTTATATTTGATGTATTTTGAGGNGCCGTTGCTTAATGGCCCCC]

[+] EMBL CA767262             [GGGCTGACACAGTGGAAATGCCTGAAGGTTCGACACTGTATGATCTCATTCAAACTGGGATAACACATTCGCATGCTTCAGTTGGTGTTGTAGTTCGTTTAAGGAAGGAATTGTCACTTGTGAAAGATGTTCCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTCCAGGAACCGGTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGTCAATGCTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAACTGCAGTTGGAAAATTACGACAGGACCTCCCAGATGTTCCATCAGATGCTCGTGTGATGTTTCCGCGGTACACTGTAAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGATCATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGGAAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCCGGATTGCTTCTGCCAAAGAAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAGTAATTTTGAAGTGCGAGCAATTTTGGCAGCAGCATAAAAGTTTCACCCCATGTGCCTGACGACGACGTTGATGTGTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGGGACCGCAGTTCTGCCCATTTTATATTTGATGTATTTTGAGGNGCCGTTGCTTAATGGCCCCC]


>consensus_12974#1 GGGCTGACACAGTGGAAATGCCTGAAGGTTCGACACTGTATGATCTCATTCAAACTGGGA TAACACATTCGCATGCTTCAGTTGGTGTTGTAGTTCGTTTAAGGAAGGAATTGTCACTTG TGAAAGATGTTCCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTG AGTTCCAGGAACCGGTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAA TGGTCAATGCTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATT CAACTGCAGTTGGAAAATTACGACAGGACCTCCCAGATGTTCCATCAGATGCTCGTGTGA TGTTTCCGCGGTACACTGTAAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAA AGATCATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAA ATGGAAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCAT ACCCGGATTGCTTCTGCCAAAGAAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAGTA ATTTTGAAGTGCGAGCAATTTTGGCAGCAGCATAAAAGTTTCACCCCATGTGCCTGACGA CGACGTTGATGTGTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAA GTTTGGGACCGCAGTTCTGCCCATTTTATATTTGATGTATTTTGAGGNGCCGTTGCTTAA TGGCCCCC



consensusID : consensus_12974#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence
                              [GGAGTAAGAGCTGCCCACTGACCCGCTGCCCCCGACCTACGACACCGCGCTCGACGTCGGGCCCGGCGGCCGCCCACTCTTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTTTTATTTTATCTTGGATGAAGTGGGAAAGCTATGTTACCCAGAGGGATGGCCAGCCGGCCTTGACAAAGGAGTTTCAGGGAGACAAAACCCGCCTGCTTGTGATGGGGAAAAAAACTTTTCTTAAACCTCAGGGGATATCCTCCCAAAAAAGCGCTGACCACCCTATTCGTCCCAACCA]

[+] EMBL BU099194             [GGAGTAAGAGCTGCCCACTGACCCGCTGCCCCCGACCTACGACACCGCGCTCGACGTCGGGCCCGGCGGCCGCCCACTCTTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTTTTATTTTATCTTGGATGAAGTGGGAAAGCTATGTTACCCAGAGGGATGGCCAGCCGGCCTTGACAAAGGAGTTTCAGGGAGACAAAACCCGCCTGCTTGTGATGGGGAAAAAAACTTTTCTTAAACCTCAGGGGATATCCTCCCAAAAAAGCGCTGACCACCCTATTCGTCCCAACCA]


>consensus_12974#2 GGAGTAAGAGCTGCCCACTGACCCGCTGCCCCCGACCTACGACACCGCGCTCGACGTCGG GCCCGGCGGCCGCCCACTCTTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGA TGCCAACGCCTACGTTTTATTTTATCTTGGATGAAGTGGGAAAGCTATGTTACCCAGAGG GATGGCCAGCCGGCCTTGACAAAGGAGTTTCAGGGAGACAAAACCCGCCTGCTTGTGATG GGGAAAAAAACTTTTCTTAAACCTCAGGGGATATCCTCCCAAAAAAGCGCTGACCACCCT ATTCGTCCCAACCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12974#0      GGCGGCGGCGGCGGAGCGGGAGGCGGCGACGACCTTGATGTGGAGTTCGAGCTGCCCACT 60
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      GACCCGCTGCCCCCGACCTACGACACCGCGCTCGACGTCGGGCCCGGCGGCCGCCCACTC 120
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      TTCGCCTTCACCGACACCTTCGCGTCCTTCTCCCGCCGCGATGCCAACGCCTACGTCGAT 180
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      TTCACCTTGGATGAATGGAAAGCTATGTTACCAGAGGGATTGCCAGCCGGCATGATGAAG 240
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      GAGTTTCAGGAGACAAGACGGTGTGCTGTGATGGTGAGAGAGAGCTTCCTAGACCTACGG 300
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      GATAACTTCCGAAGAATTGTTGATCCAGCTATTGCTGCCAAACGAAAAGATGCCAAAAGA 360
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      CAAATTGTATTAGATGGTCCCCGGAGCTGCGGTAAAAGCATTGCACTTGCAATGCTTGTC 420
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      CACTGGGCACGTACTGAAGGATGGCTAGTATTTTATGTTCCACAAGGGAAGGATTGGTCA 480
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      CATGGAGGATTCTTCTATAGAAACACCTACAATGATCTCTTTGATACTCCAATACAGGCT 540
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      GCAAAGATCTTACAGGATTTCTTGAAGTACAATGAAAACCGCTTGCAGCAGTTACCATGT 600
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      CAAATATTTGAGCCTATTCCCTTGGGGGAAGGTGCTGGTGTTGGAATGATGAAGGGGGCT 660
consensus_12974#1      -------------------------------------------------------GGGCT 5
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      GACACAGTGGAAATGCCTGAAGGTTCGACACTGTATGATCTCATTCAAACTGGGATAACA 720
consensus_12974#1      GACACAGTGGAAATGCCTGAAGGTTCGACACTGTATGATCTCATTCAAACTGGGATAACA 65
consensus_12974#2      -------------GGAGTAAGAGCTGCCCACTGACCCGCTGCCCCCGACCTACGACACCG 47
                                     *  * *  * *   *****        *   * * **  ** * * 

consensus_12974#0      CATTCGCATGCTTCAGTTGGTGTTGTAGTTCGTTTAAGGAAGGAATTGTCACTTGTGAAA 780
consensus_12974#1      CATTCGCATGCTTCAGTTGGTGTTGTAGTTCGTTTAAGGAAGGAATTGTCACTTGTGAAA 125
consensus_12974#2      CGCTCG---ACGTCGGGCCCGGCGGCCGCCCACTCTTCGCCTTCACCGACACCTTCGCGT 104
                       *  ***    * ** *     *  *  *  *  *    *     *  * *** *  *   

consensus_12974#0      GATGTTCCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTC 840
consensus_12974#1      GATGTTCCCGTATTATTTGCAATTGATCAGTATAATAGTTGGTTTACATTCAGTGAGTTC 185
consensus_12974#2      CCTTCTCCCGCCGCGATGCCAACGCCTACGTTTTAT------TTTATCTTGGATGAAGTG 158
                         *  *****      *  ***    *  ** * **      ****  **   ***  * 

consensus_12974#0      CAGGAACCG-GTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGT 899
consensus_12974#1      CAGGAACCG-GTGACTGTTAGATCATGTCGGCCAATTCATGCAAAAGAGCTTACAATGGT 244
consensus_12974#2      GGAAAGCTATGTTACCCAGAGGGATGGCCAGCCGGCCTTGACAAAGGAGTTTCAGGGAGA 218
                           * *   ** **    **     * * ***        **** *** **      * 

consensus_12974#0      CAATGTTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAAC 959
consensus_12974#1      CAATGCTTATAGGCCAATGCTACACAATGATATGATGGTAGGAGCATTTTCACATTCAAC 304
consensus_12974#2      CAAAACCCGCCTGCTTGTGATGGGGAAAAAAACTTTTCTTAAA----CCTCAGG---GGA 271
                       ***         **   ** *    **  * *   *  *   *      ***        

consensus_12974#0      TGCAGTTGGAAAATTACGACAGGACCTCCCAGATGTTCCATCAGATGCTCGTGTGATGTT 1019
consensus_12974#1      TGCAGTTGGAAAATTACGACAGGACCTCCCAGATGTTCCATCAGATGCTCGTGTGATGTT 364
consensus_12974#2      TATCCTCCCAAAAAAGCG-CTGACCACCCTATTCGTCCCAACCA---------------- 314
                       *    *   ****   ** * *  *  ** *   ** *** *                  

consensus_12974#0      TCCACGGTACACTGTAAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGAT 1079
consensus_12974#1      TCCGCGGTACACTGTAAATGAAGCTGAGACTGTCTGCCACTATTATATGAGGCAAAAGAT 424
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      CATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGG 1139
consensus_12974#1      CATCAAGCGCGAAAATTTTTCAGAAGAGAAGTGGAAAAAGATTTATTATTTGTCAAATGG 484
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      AAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCC 1199
consensus_12974#1      AAATGGCTCAGAGATGAGATGGCTTGCTGCCTTTATCTGAGTTCTGAGTTTCTCATACCC 544
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      GGATTGCTTCTGCCAAAGAAAAAAAA-CCAATTGAGTTCAAGCAGGCTGTGCAGGTTTTA 1258
consensus_12974#1      GGATTGCTTCTGCCAAAGAAAAAAAAACCAATTGAGTTCAAGCAGGCTGTGCAG------ 598
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      AACTGAAGCCATCCATTGTTGTATACTTGCAGTACACATCTTGTAAAACTCGTAGGAGCA 1318
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      AGGTGCTACCTAATGACGGTTCTATGATTTTTTTATTTCTACCCCAGTAATTTGAAGTGC 1378
consensus_12974#1      ----------TAAT------------------------------------TTTGAAGTGC 612
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      GAGCAATTTTGGCAGCAGCATAAAAATTTCACCC-ATGTGCCTGACGACGACGTTGATGT 1437
consensus_12974#1      GAGCAATTTTGGCAGCAGCATAAAAGTTTCACCCCATGTGCCTGACGACGACGTTGATGT 672
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      GTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGTGAC-GC 1496
consensus_12974#1      GTACTGAGTAGGAATGTAGTAGGATTCACTCAACAAGCCAGAACTCAAGTTTGGGACCGC 732
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      AGTTCTGCCCATTT-ATATTTGATGAATTTTGAGGTGC-GTTGCTTAGTGACGCAGGATA 1554
consensus_12974#1      AGTTCTGCCCATTTTATATTTGATGTATTTTGAGGNGCCGTTGCTTAATGGCCCCC---- 788
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      CAATAAGAACTGGCTGCTCTTAACTTTCTTTCTGGTACAGCTTCCATTTACTCTTTTTTT 1614
consensus_12974#1      ------------------------------------------------------------
consensus_12974#2      ------------------------------------------------------------
                                                                                   

consensus_12974#0      TTTATCAAATACTGTTGCTGTTTGCGATCGTTTAAAAAAAA 1655
consensus_12974#1      -----------------------------------------
consensus_12974#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)