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Oryza sativa
cluster # 12987 cluster # 12987       Sequences # 12       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12987#0 length = 861 sequences # 5  
consensus_12987#1 length = 704 sequences # 3  
consensus_12987#2 length = 345 sequences # 1  
consensus_12987#3 length = 322 sequences # 1  
consensus_12987#4 length = 270 sequences # 1  
consensus_12987#5 length = 245 sequences # 1  

consensusID : consensus_12987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 861
fasta sequence
                              [AATATATAACTGCTAAATTTTGCCGAGATCGAGCAGTTCAGTGTGTCTGTCAGAGGCCTTAATGTCGTCTTGAGCAGCCGCCGCCTGGAGATCAATAAGATCTGATGTTCTGATCAAGCTGACGATACATATACAACTCACATCTGCAGGTTGGTTCCTTTGTGTCCAAA-CCAAGGAAAGGAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCA-GCCACA-TCTGCTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATC-TTCAA-GAGGA-GGAAACCTA-GGTGACCTTGC-TCTCTGGTGGCCACGCCA-TGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCG-TCGTCGTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGAC-GACGAAATGCTGGCGATGGTCCA-CGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTA-CCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCA-ATATATATGTCTT-GCATATATATATGTGGTCATTAAATTGCCTCTTCATCGAGATATA-TTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTATTCAAATGTGTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK071445             [AATATATAACTGCTAAATTTTGCCGAGATCGAGCAGTTCAGTGTGTCTGTCAGAGGCCTTAATGTCGTCTTGAGCAGCCGCCGCCTGGAGATCAATAAGATCTGATGTTCTGATCAAGCTGACGATACATATACAACTCACATCTGCAGGTTGGTTCCTTTGTGTCCAAA CCAAGGAAAGGAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCA GCCACA TCTGCTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATC TTCAA GAGGA GGAAACCTA GGTGACCTTGC TCTCTGGTGGCCACGCCA TGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCG TCGTCGTCGTCTTCGCTTTGCTACTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGAC GACGAAATGCTGGCGATGGTCCA CGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTA CCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCA ATATATATGTCTT GCATATATATATGTGGTCATTAAATTGCCTCTTCATCGAGATATA TTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTAT                             ]
[+] EMBL AU078750             [                                                                                                                                                                 GTGTCNAAACCCAAGGAAAGGAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCA GCCACA TCTGCTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATC TTCAA GAGGA GGAACCCTA GGTGACCTTGC TCTCTGGTGGCCACGCCA TGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCG TCGTCGTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGAC GACGAAATGCTGGCGATGGTCCA CGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTA CCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCA ATATATATGTCTT GCATATATATATGTGGTCATTAAATTGCCTCTTCATCGAGATATA TTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTATTCAAA     AAAAAAAA           ]
[+] EMBL AU030895             [                                                                                                                                                                                                                         ATCTCCAGGCCACATTCTGCTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATCTTTCAA GNGGN GGAACCCTA GGTGCCCTTGC TCTCTGGTGGCCACGCCA TGGGANCCGTCAAGAGGTCTAGCTTTCTCCTCG TCGTCGTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGNGGGNGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCNGGAAGAC GACGAAATGCTGGCGATGGTCCN CGAGAGAATTCTGAGGCNGGTGAAGACGAACGACTACGGGACCTACGACCCTA CCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCA ATATATATGTCTT GCATATATATATGTGGTCATTAAATTGCCTCTTCATCGAGATATA TTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGNATGTTNTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL BI806211             [                                                                                                                                                                                                                                                                               tcCAAGGAGGAGGGAAACCTAGGGTGACC TGCTTCTCTGGT GCCAC CCATTGGGA CCCTCAAGA GTCTACCTTTCTCCTCGTTCGTCGTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCA CAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGT CAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGACTGACGAAATGCTGGCGATGGTCCACCGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTACCCCCAACCATGGCTAA CCTCACCCCAAGGAAATACCTAACTAACTATATATATATA CT CATGCATGCATCTCATATCCATAATCCATGCATCAAAATATGTGATCACATATATATGTCTTGGCATATATATATGTGGTCATTAAATTCCCTC TCATCGAGATATATTTTCGATAT TTAATTA TTTTCTACATATAATATACTACTTTTGGCC GCCATATATATACATATGTTTT TCGAATAAACTTCAT GTTT TCATGGAATGTTATTATTCATATGTGTATCAAAAAAAAAA      ]
[+] EMBL AU031475             [                                                                                                                                                                                                                                                                                                                                                                                            CCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGAC GACGAAATGCTGGCGATGGTCCA CGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTA CCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCA ATATATATGTCTT GCATATATATATGTGGTCATTAAATTGCCTCTTCATCGAGATATA TTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTATTCATATGTGTAAAAAAAAAAAAAAAAAAA]


>consensus_12987#0 AATATATAACTGCTAAATTTTGCCGAGATCGAGCAGTTCAGTGTGTCTGTCAGAGGCCTT AATGTCGTCTTGAGCAGCCGCCGCCTGGAGATCAATAAGATCTGATGTTCTGATCAAGCT GACGATACATATACAACTCACATCTGCAGGTTGGTTCCTTTGTGTCCAAACCAAGGAAAG GAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCAGCCACATCTGCTGCTTC GTCTCCTTCTCCTGAGATCTCTCGATCTTCAAGAGGAGGAAACCTAGGTGACCTTGCTCT CTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTCGTCGTCT TCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGC ATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGACG ACGAAATGCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACG GGACCTACGACCCTACCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAAC TATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTG ATCAATATATATGTCTTGCATATATATATGTGGTCATTAAATTGCCTCTTCATCGAGATA TATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATAT ATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTATTCAAATGT GTAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 704
fasta sequence
                              [TTCTTTGTTGTTGCTGCAGACAACTCACATCTGCAGGTTGGTTCCTTTGTGTCCAAACCAAGGAAAGGAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCAGCCACATCTGCTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATCTTCAAGAGGAGGAAACCTAGGTGACCTTGCTCTCTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTCGTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGACGACGAAATGCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTACCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCAATATATATGTCTTTGCATATATATATGTGGTCATTAAATTGCCTCTTCATCGAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAAAAAAAAAAAAAAA]

[+] EMBL CF334454             [TTCTTTGTTGTTGCTGCAGACAACTCACATCTGCAGGTTGGTTCCTTTGTGTCCAAACCAAGGAAAGGAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCAGCCACATCTGCTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATCTTCAAGAGGAGGAAACCTAGGTGACCTTGCTCTCTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTCGTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGACGACGAAATGCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTACCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCAATATATATGTCTTTGC                                                                                                                                         ]
[+] EMBL CA760181             [                                                           AAGGAAAGGAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCAGCCACATCTGCTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATCTTCAAGAGGAGGAAACCTAGGTGACCTTGCTCTCTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTCGTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGACGACGAAATGCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTACCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACCAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCAATATATATGTC TTGCATATATATATGTGGTCATTAAATTGCCTCTTCATCGAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAAAAAAAAAAAAAAA]
[+] EMBL AU030894             [                                                                                           TCCCTACTCCTCATCTCCAGCCACATCTGCTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATCTTCAAGAGGAGGAAACCTAGGTGACCTTGCTCTCTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTCGTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAGGAAGACGACGAAATGCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGAAGACGAACGACTACGGGACCTACGACCCTANCCCAACCATGGCTAAGCCTCACGCCAAGG AATACCTAACTAACTATATATATATAGCT                                                                                                                                                                                                          ]


>consensus_12987#1 TTCTTTGTTGTTGCTGCAGACAACTCACATCTGCAGGTTGGTTCCTTTGTGTCCAAACCA AGGAAAGGAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCAGCCACATCTG CTGCTTCGTCTCCTTCTCCTGAGATCTCTCGATCTTCAAGAGGAGGAAACCTAGGTGACC TTGCTCTCTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTC GTCGTCTTCGCTTTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATC AACAAGCATCAAGTGCAATCAATGGAGACGTCTGATGATGAATCCATGCATCAAGGGCAG GAAGACGACGAAATGCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGAAGACGAAC GACTACGGGACCTACGACCCTACCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCT AACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAA ATATGTGATCAATATATATGTCTTTGCATATATATATGTGGTCATTAAATTGCCTCTTCA TCGAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGG CCATATATATACATATGTTTTGTCGAATAAAAAAAAAAAAAAAA



consensusID : consensus_12987#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence
                              [GAAGACGAACGACTACGGGATCTACGACCCTCCCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATCTGATCAATATATATGTCTTGCATATATATATGTGGTCATTAAATTGCCTCTTCATCCAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTATTCATATGTGTATCTCATTAGTTGTACGTACATGT]

[-] EMBL CB967010             [GAAGACGAACGACTACGGGATCTACGACCCTCCCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATCTGATCAATATATATGTCTTGCATATATATATGTGGTCATTAAATTGCCTCTTCATCCAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCGGCCATATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTATTCATATGTGTATCTCATTAGTTGTACGTACATGT]


>consensus_12987#2 GAAGACGAACGACTACGGGATCTACGACCCTCCCCCAACCATGGCTAAGCCTCACGCCAA GGAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCC ATGCATGCAAATATCTGATCAATATATATGTCTTGCATATATATATGTGGTCATTAAATT GCCTCTTCATCCAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACT TTGGGCCGGCCATATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGG AATGTTATTATTCATATGTGTATCTCATTAGTTGTACGTACATGT



consensusID : consensus_12987#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence
                              [TCTGGAGAGGGAAGGGCGCCATGCAGTCCATGAGTTCGGGCCAAGGCAGAGGTGGGCGACTACGGGTATCTGTGGACCCTCCGCCAACCATGGGTAAGCATCACGGCAACGTAAATCCGCTAAGTAACCTATATATAGATAGCGGCAGGCAGGCATTTTATATCCATAATCCACGCATGCGAATATCTGATCAATATAGATGTGTTGCACATATAGATGTGGTCAGTAAATGGCCTCTTCATCCAGATATATTTGGATATGCTAATTAGTTTGCTACATATAATAAAGCACCTTGGGCCGGCCATATATATATACATATGTT]

[-] EMBL BI305588             [TCTGGAGAGGGAAGGGCGCCATGCAGTCCATGAGTTCGGGCCAAGGCAGAGGTGGGCGACTACGGGTATCTGTGGACCCTCCGCCAACCATGGGTAAGCATCACGGCAACGTAAATCCGCTAAGTAACCTATATATAGATAGCGGCAGGCAGGCATTTTATATCCATAATCCACGCATGCGAATATCTGATCAATATAGATGTGTTGCACATATAGATGTGGTCAGTAAATGGCCTCTTCATCCAGATATATTTGGATATGCTAATTAGTTTGCTACATATAATAAAGCACCTTGGGCCGGCCATATATATATACATATGTT]


>consensus_12987#3 TCTGGAGAGGGAAGGGCGCCATGCAGTCCATGAGTTCGGGCCAAGGCAGAGGTGGGCGAC TACGGGTATCTGTGGACCCTCCGCCAACCATGGGTAAGCATCACGGCAACGTAAATCCGC TAAGTAACCTATATATAGATAGCGGCAGGCAGGCATTTTATATCCATAATCCACGCATGC GAATATCTGATCAATATAGATGTGTTGCACATATAGATGTGGTCAGTAAATGGCCTCTTC ATCCAGATATATTTGGATATGCTAATTAGTTTGCTACATATAATAAAGCACCTTGGGCCG GCCATATATATATACATATGTT



consensusID : consensus_12987#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence
                              [TGCCGAGATCGAGCAGTTCAGTGTGTCTGTCAGAGGCCTTAATGTCGTCTTGAGCAGCCGCCGCCTGGAGATCAATAAGATCTGATGTTCTGATCAAGNTGACGATACATATGTATTTATNCTTCTNACCGTTATTACTGTATGCATTTNCTTGTTCCTGAAACTGCTTTCTTTAATTTCCCTGAAAGTTTTTCCTGATGTTGTTTTGTTGTAGAAGTATTTGGATTATACATGTTTTCTGGTGCATGCTTGCTCATATATATGTCTGCN]

[+] EMBL C71977               [TGCCGAGATCGAGCAGTTCAGTGTGTCTGTCAGAGGCCTTAATGTCGTCTTGAGCAGCCGCCGCCTGGAGATCAATAAGATCTGATGTTCTGATCAAGNTGACGATACATATGTATTTATNCTTCTNACCGTTATTACTGTATGCATTTNCTTGTTCCTGAAACTGCTTTCTTTAATTTCCCTGAAAGTTTTTCCTGATGTTGTTTTGTTGTAGAAGTATTTGGATTATACATGTTTTCTGGTGCATGCTTGCTCATATATATGTCTGCN]


>consensus_12987#4 TGCCGAGATCGAGCAGTTCAGTGTGTCTGTCAGAGGCCTTAATGTCGTCTTGAGCAGCCG CCGCCTGGAGATCAATAAGATCTGATGTTCTGATCAAGNTGACGATACATATGTATTTAT NCTTCTNACCGTTATTACTGTATGCATTTNCTTGTTCCTGAAACTGCTTTCTTTAATTTC CCTGAAAGTTTTTCCTGATGTTGTTTTGTTGTAGAAGTATTTGGATTATACATGTTTTCT GGTGCATGCTTGCTCATATATATGTCTGCN



consensusID : consensus_12987#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence
                              [TCGTCTCGTCTTTCCTTTGGCTCCNCCTGACCTCCATGGCACCCTGGAGGGAGGAATATGTTGATCCTACCAGCGCTCAGTGCNATCNATGGAGACGGTCTGATGATGAATCCNTGCATCAAGGGCAGGAAGACGACGAAATGCTGGCGATGGTCCCCGAGAGAATTNTGAGGCNGGTGAAGACGACGACTACGGGACCTTCGACCCTACCCCCACCCTGGCGTATAGCCTCACGCCACAGGAAA]

[+] EMBL BI806439             [TCGTCTCGTCTTTCCTTTGGCTCCNCCTGACCTCCATGGCACCCTGGAGGGAGGAATATGTTGATCCTACCAGCGCTCAGTGCNATCNATGGAGACGGTCTGATGATGAATCCNTGCATCAAGGGCAGGAAGACGACGAAATGCTGGCGATGGTCCCCGAGAGAATTNTGAGGCNGGTGAAGACGACGACTACGGGACCTTCGACCCTACCCCCACCCTGGCGTATAGCCTCACGCCACAGGAAA]


>consensus_12987#5 TCGTCTCGTCTTTCCTTTGGCTCCNCCTGACCTCCATGGCACCCTGGAGGGAGGAATATG TTGATCCTACCAGCGCTCAGTGCNATCNATGGAGACGGTCTGATGATGAATCCNTGCATC AAGGGCAGGAAGACGACGAAATGCTGGCGATGGTCCCCGAGAGAATTNTGAGGCNGGTGA AGACGACGACTACGGGACCTTCGACCCTACCCCCACCCTGGCGTATAGCCTCACGCCACA GGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12987#1      ------------------------------------------------------------
consensus_12987#5      ------------------------------------------------------------
consensus_12987#0      AATATATAACTGCTAAATTTTGCCGAGATCGAGCAGTTCAGTGTGTCTGTCAGAGGCCTT 60
consensus_12987#2      ------------------------------------------------------------
consensus_12987#3      ------------------------------------------------------------
consensus_12987#4      ------------------------------------------------------------
                                                                                   

consensus_12987#1      -----------------------------------------------------TTCTTTG 7
consensus_12987#5      ------------------------------------------------------------
consensus_12987#0      AATGTCGTCTTGAGCAGCCGCCGCCTGGAGATCAATAAGATCTGATGTTCTGATCAAGCT 120
consensus_12987#2      ------------------------------------------------------------
consensus_12987#3      ------------------------------------------------------------
consensus_12987#4      ------------------------------------------------------------
                                                                                   

consensus_12987#1      TTGTTGCTGCAGACAACTCACATCTGCAGGTTGGTTCCTTTGTGTCCAAACCAAGGAAAG 67
consensus_12987#5      ------------------------------------------------------------
consensus_12987#0      GACGATACATATACAACTCACATCTGCAGGTTGGTTCCTTTGTGTCCAAACCAAGGAAAG 180
consensus_12987#2      ------------------------------------------------------------
consensus_12987#3      ------------------------------------------------------------
consensus_12987#4      ------------------------------------------------------------
                                                                                   

consensus_12987#1      GAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCAGCCACATCTGCTGCTTC 127
consensus_12987#5      ------------------------------------------------------------
consensus_12987#0      GAAAGGCACAGTCATCTCTCTCTCTCCCTACTCCTCATCTCCAGCCACATCTGCTGCTTC 240
consensus_12987#2      ------------------------------------------------------------
consensus_12987#3      ------------------------------------------------------------
consensus_12987#4      ------------------------------------------------------------
                                                                                   

consensus_12987#1      GTCTCCTTCTCCTGAGATCTCTCGATCTTCAAGAGGAGGAAACCTAGGTGACCTTGCTCT 187
consensus_12987#5      ------------------------------------------------------------
consensus_12987#0      GTCTCCTTCTCCTGAGATCTCTCGATCTTCAAGAGGAGGAAACCTAGGTGACCTTGCTCT 300
consensus_12987#2      ------------------------------------------------------------
consensus_12987#3      -----------------------------------------------------TCTGGAG 7
consensus_12987#4      ------------------------------------------------------------
                                                                                   

consensus_12987#1      CTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTCGTCGTCT 247
consensus_12987#5      ------------------------------------------------TCGTC-TCGTCT 11
consensus_12987#0      CTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTCGTCGTCT 360
consensus_12987#2      ----------------------------------------GAAGACGAACGACTACGGG- 19
consensus_12987#3      AGGGAAGGGCGCCATGCAGTCCATGAGTTCGGGCCAAGGCAGAGGTGGGCGACTACGGGT 67
consensus_12987#4      ----------------------------------------------TGCCGAGATCGAGC 14
                                                                        **    **   

consensus_12987#1      --TCGCTTTG-CTCCTC-CTGACCTCCAT--GGCAGCA-GGAGGGAGGAAGATGTTGATC 300
consensus_12987#5      --TTCCTTTGGCTCCNC-CTGACCTCCAT--GGCACCCTGGAGGGAGGAATATGTTGATC 66
consensus_12987#0      --TCGCTTTG-CTCCTC-CTGACCTCCAT--GGCAGCA-GGAGGGAGGAAGATGTTGATC 413
consensus_12987#2      --ATCTACG-ACCCTCCCCCAACCATGGCTAAGCCTCACGCCAAGG-AAATAC-CTAACT 74
consensus_12987#3      --ATCTGTGGACCCTCCGCCAACCATGGGTAAGCATCACGGCAACGTAAATCCGCTAAGT 125
consensus_12987#4      AGTTCAGTGTGTCTGTCAGAGGCCTTAATGTCGTCTTG-AGCAGCCGCCGCCTGGAGATC 73
                                       *     **        *                        *  

consensus_12987#1      A-ACAAGCATCAAGTGCAATCAATGGAGACG-TCTG-ATGATGAATCCATGCAT-CAAGG 356
consensus_12987#5      CTACCAGCGCTCAGTGCNATCNATGGAGACGGTCTG-ATGATGAATCCNTGCAT-CAAGG 124
consensus_12987#0      A-ACAAGCATCAAGTGCAATCAATGGAGACG-TCTG-ATGATGAATCCATGCAT-CAAGG 469
consensus_12987#2      A-AC-TATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAAT 132
consensus_12987#3      A-ACCTATATATAGATAGCGGCAGGCAGGCATTTTATATCCATAATCCACGCATGCGAAT 184
consensus_12987#4      AATAAGATCTGATGTTCTGATCAAGNTGACGATACATATGT---ATTTATNCTTCTNACC 130
                                             * *    *       **     **     * *   *  

consensus_12987#1      GCAGGAAGACGACGAAAT-GCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGAAGA 415
consensus_12987#5      GCAGGAAGACGACGAAAT-GCTGGCGATGGTCCCCGAGAGAATTNTGAGGCNGGTGAAGA 183
consensus_12987#0      GCAGGAAGACGACGAAAT-GCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGAAGA 528
consensus_12987#2      ATCTGATCAATATATATG-TCTTGCATATATATATGTGGTCATTAAATTGCCTCTTCATC 191
consensus_12987#3      ATCTGATCAATATAGATG-TGTTGCACATATAGATGTGGTCAGTAAATGGCCTCTTCATC 243
consensus_12987#4      GTTATTACTGTATGCATTTNCTTGTTCCTGAAACTGCTTTCTTTAATTTCCCTGAAAGTT 190
                                  *   *     * *           *       *      *         

consensus_12987#1      CGAACGACTACGGGACCTACGACCCTACCCCAAC-CATGGC-TA-AGCCTCACGCCA-AG 471
consensus_12987#5      CGA-CGACTACGGGACCTTCGACCCTACCCCCAC-CCTGGCGTATAGCCTCACGCCACAG 241
consensus_12987#0      CGAACGACTACGGGACCTACGACCCTACCCCAAC-CATGGC-TA-AGCCTCACGCCA-AG 584
consensus_12987#2      CAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTTGGGCCG-GC 250
consensus_12987#3      CAGATATATTTGGATATGCTAATTAGTTTGCTACATATAATAAAGCACCTTGGGCCG-GC 302
consensus_12987#4      TTTCCTGATGTTGTTTTGTTGTAGAAGTATTTGGATTATACATGTTTTCTGGTGCATGCT 250
                               *   *                                    *   **     

consensus_12987#1      GAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCA 531
consensus_12987#5      GAAA-------------------------------------------------------- 245
consensus_12987#0      GAAATACCTAACTAACTATATATATATAGCTGCATGCATGCATCTCATATCCATAATCCA 644
consensus_12987#2      CATATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTA 310
consensus_12987#3      CATATATATATACATATGTT---------------------------------------- 322
consensus_12987#4      TGCTCATATATATGTCTGCN---------------------------------------- 270
                                                                                   

consensus_12987#1      TGCATGCAAATATGTGATCAATATATATGTCTTTGCATATATATATGTGGTCATTAAATT 591
consensus_12987#5      ------------------------------------------------------------
consensus_12987#0      TGCATGCAAATATGTGATCAATATATATGTCTT-GCATATATATATGTGGTCATTAAATT 703
consensus_12987#2      TTCATATGTGTATCTCATTAGTTGTACGTACATGT------------------------- 345
consensus_12987#3      ------------------------------------------------------------
consensus_12987#4      ------------------------------------------------------------
                                                                                   

consensus_12987#1      GCCTCTTCATCGAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACT 651
consensus_12987#5      ------------------------------------------------------------
consensus_12987#0      GCCTCTTCATCGAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACT 763
consensus_12987#2      ------------------------------------------------------------
consensus_12987#3      ------------------------------------------------------------
consensus_12987#4      ------------------------------------------------------------
                                                                                   

consensus_12987#1      TTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAAAAAAAAAAAAAAA------- 704
consensus_12987#5      ------------------------------------------------------------
consensus_12987#0      TTGGGCCGGCCATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAA 823
consensus_12987#2      ------------------------------------------------------------
consensus_12987#3      ------------------------------------------------------------
consensus_12987#4      ------------------------------------------------------------
                                                                                   

consensus_12987#1      --------------------------------------
consensus_12987#5      --------------------------------------
consensus_12987#0      TGTTATTATTCAAATGTGTAAAAAAAAAAAAAAAAAAA 861
consensus_12987#2      --------------------------------------
consensus_12987#3      --------------------------------------
consensus_12987#4      --------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)