|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 866 fasta sequence
[ACAAACCATT-GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT-CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCAAGTGCTTCCCCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BP432978 [ACAAACCATTAGCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCA ]
[+] EMBL AU162595 [ CATT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCTNCAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCTAGGAGCTCGCCCNCNTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCA ]
[+] EMBL OSR28361A [ TT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCNTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCNGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGNGNCGCTGCTGCGCTT CAAGGACCGNATCGAGCTGCAGGAGGAG ]
[+] EMBL CF324921 [ TT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCA ]
[+] EMBL CA754826 [ TGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGC ]
[+] EMBL OSR18231A [ TTAATCATCAATGGCTTCCGCCGTGGTGAAGANGGCCGTCGTCTGCCNGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCNGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCG CT CAAGNACCGCATCGAGCTGCAGNTGTAGGAGGCNCTGNTCCTCGCCGAGGAGCTCGNCCTCCTCGACGACGNCGCCGGCGACGCCGTCGGAGCCNGCTGCTCCTTCAGCA ]
[+] EMBL AU070746 [ CGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCAAGTGCTTCCCCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATC ATTT ]
[+] EMBL AU071133 [ AAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGG GCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU089718 [ CACCAGCAAGTGCTT CTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATC ATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAA ]
[+] EMBL OSR26291A [ AGTGCTTCGCCTTCGG GCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTT ]
[+] EMBL AU070918 [ GTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATNGTTNATTATATTAAAAAAAAAAAAAAAAA ]
consensusID : consensus_12997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGTAATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATGGCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACGAACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCCTCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGCTCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCCCTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACACGAGTGCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTATCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCTGCATATCGAATTAACTCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGTCCCTGATCATGCGTATATAGGGAG]
[+] EMBL CA753753 [TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGTAATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATGGCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACGAACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCCTCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGCTCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCCCTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACACGAGTGCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTATCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCTGCATATCGAATTAACTCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGTCCCTGATCATGCGTATATAGGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12997#0 ACAAACCATTGCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGT 60
consensus_12997#1 --------------------TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGT 40
******************************* ** *****
consensus_12997#0 AATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTG 120
consensus_12997#1 AATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATG 100
******** ** *** **** ***** *** *** ** ** ******* ***** **
consensus_12997#0 TCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCG 180
consensus_12997#1 GCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACG 160
** * * ***** *** ********* ********* ****** * ** ** ** **
consensus_12997#0 G-CGGCGCTGCTGCGCCTCAAGGACCGCATCGAGCT-GCAGGAGGAGGAGGCCCTGGCCC 238
consensus_12997#1 AACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCC 220
* ** ** ** * ************ * ** * ** ** ** **** **** ***
consensus_12997#0 TCGCCGAGGAGC-TCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGC 297
consensus_12997#1 TCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGC 280
***** * * * ** *** ******* ** * ** * *** * ** * ***
consensus_12997#0 TCCTGCAGCACCACCAAGTG-CAAGACGTGCATCGCCACCTGCGGGATCA-AGTGCTTCC 355
consensus_12997#1 TCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCC 340
***** *** ****** * ***** * ************ ****** *********
consensus_12997#0 CCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGT 415
consensus_12997#1 CTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACA-CGAGT 399
* * * * *** ******** ** ********* *** ******* ** * ***
consensus_12997#0 GCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAA 475
consensus_12997#1 GCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTA 459
***** **** ************ ***** ***** ** ** * ** ******** *
consensus_12997#0 TCG-CGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAG 534
consensus_12997#1 TCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCT-G 518
** * *** *** **** ******* **** **** *** **** * * **** *
consensus_12997#0 AATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGT 594
consensus_12997#1 CATATCGAATTAAC-TCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGT 577
*** ********* ***** * ********************* * * **********
consensus_12997#0 CCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGT 654
consensus_12997#1 CCCTGATCATGCGTATATAGGGAG------------------------------------ 601
*********** ** * * ***
consensus_12997#0 TATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGT 714
consensus_12997#1 ------------------------------------------------------------
consensus_12997#0 ACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCC 774
consensus_12997#1 ------------------------------------------------------------
consensus_12997#0 AATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 834
consensus_12997#1 ------------------------------------------------------------
consensus_12997#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 866
consensus_12997#1 --------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||