These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 866 fasta sequence [ACAAACCATT-GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT-CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCAAGTGCTTCCCCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BP432978 [ACAAACCATTAGCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCA ] [+] EMBL AU162595 [ CATT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCTNCAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCTAGGAGCTCGCCCNCNTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCA ] [+] EMBL OSR28361A [ TT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCNTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCNGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGNGNCGCTGCTGCGCTT CAAGGACCGNATCGAGCTGCAGGAGGAG ] [+] EMBL CF324921 [ TT GCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGCTGCAGGAGGAGGAGGCCCTGGCCCTCGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCA ] [+] EMBL CA754826 [ TGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGTAATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCGCCT CAAGGACCGCATCGAGC ] [+] EMBL OSR18231A [ TTAATCATCAATGGCTTCCGCCGTGGTGAAGANGGCCGTCGTCTGCCNGCTCCTCCTGTCCGCCGGTCATCTGATGGCCTCCGCNGCCGCCGCGCGCCCGGACACCGTCGACGACGCGGCGGCGCTGCTGCG CT CAAGNACCGCATCGAGCTGCAGNTGTAGGAGGCNCTGNTCCTCGCCGAGGAGCTCGNCCTCCTCGACGACGNCGCCGGCGACGCCGTCGGAGCCNGCTGCTCCTTCAGCA ] [+] EMBL AU070746 [ CGCCGAGGAGCTCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGCTCCTGCAGCACCACCAAGTGCAAGACGTGCATCGCCACCTGCGGGATCAAGTGCTTCCCCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATC ATTT ] [+] EMBL AU071133 [ AAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGTGCTTCGCCTTCGG GCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU089718 [ CACCAGCAAGTGCTT CTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATC ATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATCGTTAATTAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAA ] [+] EMBL OSR26291A [ AGTGCTTCGCCTTCGG GCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAATCGCGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTT ] [+] EMBL AU070918 [ GTGTGTGCAAAGAATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGTCCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGTTATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGTACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCCAATAAATCGATNGTTNATTATATTAAAAAAAAAAAAAAAAA ] consensusID : consensus_12997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGTAATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATGGCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACGAACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCCTCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGCTCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCCCTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACACGAGTGCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTATCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCTGCATATCGAATTAACTCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGTCCCTGATCATGCGTATATAGGGAG] [+] EMBL CA753753 [TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGTAATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATGGCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACGAACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCCTCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGCTCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCCCTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACACGAGTGCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTATCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCTGCATATCGAATTAACTCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGTCCCTGATCATGCGTATATAGGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12997#0 ACAAACCATTGCAACTGCACTACACTGCAGCACACACACCCCGCACCCACCAAGCTAAGT 60 consensus_12997#1 --------------------TACACTGCAGCACACACACCCCGCACCCACCGAGGTAAGT 40 ******************************* ** ***** consensus_12997#0 AATTAATCATCAATGGCTTCCGCCGTGGTGAAGATGGCCGTCGTCTGCCTGCTCCTCCTG 120 consensus_12997#1 AATTAATCCTCCATGCGTTCCCTCGTGGAGAACATGATCGACGACTGCCTGTTCCTCATG 100 ******** ** *** **** ***** *** *** ** ** ******* ***** ** consensus_12997#0 TCCGCCGGTCATCTGATGGCCTCCGCCGCCGCCGCGCGCCCGGACACCGTCGACGACGCG 180 consensus_12997#1 GCCACAGCACATCTAATGTCCTCCGCCGACGCCGCGCGTGCGGACATCATCAACAACACG 160 ** * * ***** *** ********* ********* ****** * ** ** ** ** consensus_12997#0 G-CGGCGCTGCTGCGCCTCAAGGACCGCATCGAGCT-GCAGGAGGAGGAGGCCCTGGCCC 238 consensus_12997#1 AACAACGATGATGAGACTCAAGGACCGCTGCAAGTTTGCTAGAAGAAGAGGACCTGCCCC 220 * ** ** ** * ************ * ** * ** ** ** **** **** *** consensus_12997#0 TCGCCGAGGAGC-TCGCCCTCCTCGACGACGGCGCCGGCGACGCCGTCGGAGCCGGCTGC 297 consensus_12997#1 TCGCCTATGCACATCAATCTCATCGACGATCCCGGAGCTCACTGCATCGAACCCTGGTGC 280 ***** * * * ** *** ******* ** * ** * *** * ** * *** consensus_12997#0 TCCTGCAGCACCACCAAGTG-CAAGACGTGCATCGCCACCTGCGGGATCA-AGTGCTTCC 355 consensus_12997#1 TCCTGATCATCCAGCAAGTGTCCAGACGAGAATCGCCACCTGCAGGATCACAGTGCTTCC 340 ***** *** ****** * ***** * ************ ****** ********* consensus_12997#0 CCAAGGGAATCAAAGGCTTCCCCACCTGCTTCTTCGCCTGCGTCTTCACCACCAGCAAGT 415 consensus_12997#1 CTACTTCTAATACAGGGTTCCCCACATGGTTCTTCGCCAGCGACTTCACCTACA-CGAGT 399 * * * * *** ******** ** ********* *** ******* ** * *** consensus_12997#0 GCTTCGCCTTCGGCGCCTAATCGATCAATCGATCACGTCGTCGTCTCGGCTCGTCATCAA 475 consensus_12997#1 GCTTCAGCTTCAGCGCCTAATCGAACAATCAATCACATCATCATTTCTCGTCGTCATCTA 459 ***** **** ************ ***** ***** ** ** * ** ******** * consensus_12997#0 TCG-CGATCGATCGGTCGTTTTCACCTAATAATAATATAATCATATGTGTGTGTGCAAAG 534 consensus_12997#1 TCAACTATCAATCTCACGTTGTCACCTACTAATGATATGATCGTATGAGAGAGTGCCT-G 518 ** * *** *** **** ******* **** **** *** **** * * **** * consensus_12997#0 AATAACGAATTAACCTCCCCAAGCTTCATGTATGCATACATGCATCGTTAGTGCATGTGT 594 consensus_12997#1 CATATCGAATTAAC-TCCCCGACATTCATGTATGCATACATGCATGGATGGTGCATGTGT 577 *** ********* ***** * ********************* * * ********** consensus_12997#0 CCCTGATCATGGGTCTCTGGGGGAGGATCATGTTGTGTCGTGTGTCGGCTGTGTCTCGGT 654 consensus_12997#1 CCCTGATCATGCGTATATAGGGAG------------------------------------ 601 *********** ** * * *** consensus_12997#0 TATCGTCTTATCGATTTCGATCATATCGGCCAATTGTTGTCGCGCTGGCCACGTATATGT 714 consensus_12997#1 ------------------------------------------------------------ consensus_12997#0 ACTTGATCGATGACCGAGAAACTCCTAGGTCAATCTGTGTGTTCATATATACATCAGTCC 774 consensus_12997#1 ------------------------------------------------------------ consensus_12997#0 AATAAATCGATCGTTAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 834 consensus_12997#1 ------------------------------------------------------------ consensus_12997#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 866 consensus_12997#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||