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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1560 fasta sequence
[CACGCACCGGAGCGAGAAGAAGAAGAACCCAATCATTTCCCTCCCTCCCTCCCACCGTCGTCTCGTCGCGAACCCGCGAGAATCCCAACCTCCTCCTCCGCTTTCCCTCCTTTCTCCTTCCCACCCGCGCTACCGAGCAGAGCACTGCTTGGCTCGGCTGGCTCTTGCGGTTCGAGGTCAGTCGCCTGGCGCCGCGCGCGGCGGGCGAGGGGGTCGGTTGATGGTGCCATGTGGCCCCTGGGGTTCTTCTCCGAGAGGCTGTTCAAGGTCGCGGGGGAAGGGGACGGCGGCGAGGGGGCGGACGACTCGCCGCCGGCCCCTGACGGCCGTGTCCCTCTAGCCCGCCGCTCGTACTACGTCGATGTTCCGCATGTCCAGCAGGCCTTCACGTGGGACTGCGGCCTCGCTTGCGTGCTCATGGTGCTCAGGACACTCGGGATGGATTGCTGCGACGGCATTGCCGATCTCGAGAAGCTCTGCCGCACCACGAGGTTCCTCTCTTGGACTAGATTATTACTTCAAATTTGAGTTTACAACTAAACACGGGGGGCGCAATTCTCCTTAGTTAATGAAAAAAATTGATACCCCGAATCATTTGTTTATTCATGGATAATTATTCTTCTTTTCTTTATGAGATTGCGTGGATAACGAACAGTGATTACTCTGTCAGTTCATGAATGCTTGTTACTACTTTGACCACTTGATTGTTCCCACATTTTGCACTGCATAATCACTTTTATCCGGTGTAGTTAAAATGCTCTTTGCAAATAATTCCATCTTAGGTGAAAATTAATTTGGAAGAGAATAAAAAATTGTGCATTTCAATTGTAATATGACAATTATTTATGAGGACATAAAGTAGCTTAGACGTGAGAAATATTCGTGGATATATTATATTGCAATACAATCATTCCCTAGATGAGCTGGACATAATATTTAATTCTCTTTAATTTTGGCCTATTAAAAATTTTAATAGCACGTCTGGTGTATTAACAATCTGACATTTCTGGGTTGTGCAGCATATGGACAGTTGACTTGGCATATCTGTTAAACAGGTTTTCAGTTTGTTTTTCCTTCTTCACTGTGACTCTAGGAGCAAATCCGCAATATTCTGCTGAAACCTTTTATAGGGAGCAATTGCAAGAAGACATTGATCGAGTGGATGAGCTCTTTGGCAGAG-CCTTGAAGCTGGAATTAGTATTCAATGCAGATCCATCAGTGCGTATGATATAGCTTTTCTACTGTTATCTGGGCACTGCATTGCTATCGCACTAGTGGACAAAACAAAATTGAAGTAAGGGATTTTTTTGGTCATAGCAAGTGAGATGAAGTATACTTTGTTCTGTATTTCTGTCAATACTTTTACTCCTTTAAGACAGTCTTACATTTGTCTTCGGCATTCAGACATCGCCTCATAAGCAAGTTGTCCAATGGTAAATGCAAT--GG-GTGGACAATGTTAC-TTGCTGTACTT-GTCTCATTTT-AATATCTCAAATTCTTT-TGATTTAACGGTCATAAGGTGATTATTAGTTTAATATTTTGCAACCGTGCCAACATTATGTA]
[+] EMBL AK102175 [CACGCACCGGAGCGAGAAGAAGAAGAACCCAATCATTTCCCTCCCTCCCTCCCACCGTCGTCTCGTCGCGAACCCGCGAGAATCCCAACCTCCTCCTCCGCTTTCCCTCCTTTCTCCTTCCCACCCGCGCTACCGAGCAGAGCACTGCTTGGCTCGGCTGGCTCTTGCGGTTCGAGGTCAGTCGCCTGGCGCCGCGCGCGGCGGGCGAGGGGGTCGGTTGATGGTGCCATGTGGCCCCTGGGGTTCTTCTCCGAGAGGCTGTTCAAGGTCGCGGGGGAAGGGGACGGCGGCGAGGGGGCGGACGACTCGCCGCCGGCCCCTGACGGCCGTGTCCCTCTAGCCCGCCGCTCGTACTACGTCGATGTTCCGCATGTCCAGCAGGCCTTCACGTGGGACTGCGGCCTCGCTTGCGTGCTCATGGTGCTCAGGACACTCGGGATGGATTGCTGCGACGGCATTGCCGATCTCGAGAAGCTCTGCCGCACCACGAGGTTCCTCTCTTGGACTAGATTATTACTTCAAATTTGAGTTTACAACTAAACACGGGGGGCGCAATTCTCCTTAGTTAATGAAAAAAATTGATACCCCGAATCATTTGTTTATTCATGGATAATTATTCTTCTTTTCTTTATGAGATTGCGTGGATAACGAACAGTGATTACTCTGTCAGTTCATGAATGCTTGTTACTACTTTGACCACTTGATTGTTCCCACATTTTGCACTGCATAATCACTTTTATCCGGTGTAGTTAAAATGCTCTTTGCAAATAATTCCATCTTAGGTGAAAATTAATTTGGAAGAGAATAAAAAATTGTGCATTTCAATTGTAATATGACAATTATTTATGAGGACATAAAGTAGCTTAGACGTGAGAAATATTCGTGGATATATTATATTGCAATACAATCATTCCCTAGATGAGCTGGACATAATATTTAATTCTCTTTAATTTTGGCCTATTAAAAATTTTAATAGCACGTCTGGTGTATTAACAATCTGACATTTCTGGGTTGTGCAGCATATGGACAGTTGACTTGGCATATCTGTTAAACAGGTTTTCAGTTTGTTTTTCCTTCTTCACTGTGACTCTAGGAGCAAATCCGCAATATTCTGCTGAAACCTTTTATAGGGAGCAATTGCAAGAAGACATTGATCGAGTGGATGAGCTCTTTGGCAGAGCCCTTGAAGCTGGAATTAGTATTCAA ATCCATCAGTGCGTATGATATAGCTTTTCTACTGTTATCTGGGCACTGCATTGCTATCGCACTAGTGGACAAAACAAAATTGAAGTAAGGGATTTTTTTGGTCATAGCAAGTGAGATGAAGTATACTTTGTTCTGTATTTCTGTCAATACTTTTACTCCTTTAAGACAGTCTTACATTTGTCTTCGGCATTCAGACATCGCCTCATAAGCAAGTTGTCCAATGGTAAATGCAAT GG GTGGACAATGTTAC TTGCTGTACTT GTCTCATTTT AATATCTCAAATTCTTT TGATTTAACGATCATAAGGTGATTATTAGTTTAATATTTTGCAACCGTGCCAACATTATGTA]
[+] EMBL CB641855 [ CCCTCCCTCCCACCGTCGTCTCGTCGCGAACCCGCGAGAATCCCAACCTCCTCCTCCGCTTTCCCTCCTTTCTCCTTCCCACCCGCGCTACCGAGCAGAGCACTGCTTGGCTCGGCTGGCTCTTGCGGTTCGAGGTCAGTCGCCTGGCGCCGCGCGCGGCGGGCGAGGGGGTCGGTTGATGGTGCCATGTGGCCCCTGGGGTTCTTCTCCGAGAGGCTGTTCAAGGTCGCGGGG ]
[+] EMBL C73753 [ CATTGATCGAGTGGATGAGCTCTTTGGCAGAG CCTTGAAGCTGGAATTAGTATTCAATGCAGATCCATCAGTGCGTATGATATAGCTTTTCTACTGTTATCTGGGCACTGCATTGCTATCGCACTAGTGGACAAAACAAAATTGAAGTAAGGGATTTTTTTGGTCATAGCAAGTGAGATGAAGTATACTTTGTTCTGTATTTCTGTCAATACTTTTACTCCTTTAAGACAGTCTTACATTTGTCTTCGGCATTCAGACATCGCCTCATAAGCAAGTTGTCCAATGGTAAATGCAATGGGG GTGGACAATGTTAC TTGCTGTACTN GTCTCATTTT AATATCTCAAATTCTTTNTGATTTAACGGTCATAAGGTGATTATTAGTTTAATATTTTGC ]
[+] EMBL C73950 [ ATTGATCGAGTGGATGAGCTCTTTGGCAGAG CCTTGAAGCTGGAATTAGTATTCAATGCAGATCCATCAGTGCGTATGATATAGCTTTTCTACTGTTATCTGGGCACTGCATTGCTATCGCACTAGTGGACAAAACAAAATTGAAGTAAGGGATTTTTTTGGTCATAGCAAGTGAGATGAAGTATACTTTGTTCTGTATTTCTGTCAATACTTTTACNCCTTTAAGACAGTCTTACATTTGTCTTCGGCATTCAGACATCGCCTCATAAGCAAGTTGTCCAATGGTAAATGCAAT GGNGTGGNCAATGTTACTTTGCTGTACTTGGTCTCATTTTNAATATCTCAAATCCTTT TGATTTAACGGNCAT AGGTGATTATTAGTTTAATA TTTNCACCCG GCC ACATTnt ]
consensusID : consensus_12998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 816 fasta sequence
[CAGTGCGTATGATATAGCTTTTCTACTGTTATCTGGGCACTGCATTGCTATCGCACTAGTGGACAAAACAAAATTGAATTCCTCATGGAGCAATGATCTACAAGATATGCAACAGTTCAGTGAGGATTCAGATTACATGGGGCATTATGTTGTAATATGTGGGTATGATGCTGATGCTTGCGAATTTGAGATAAGGGACCCTGCCAGTTCGAGACAGCGTGAAAGGGTGTCAATGAAGAGCTTAGATCAGGCCCGCAAGTCCTTTGGAACTGATGAGGATATTATTTTGGTTTCTTTAACTGGAAAAATTGGAATGAAGCTCTCACGTAAACTCCTGGTGGGCTCCTTGTGAAAACCTCAACTCCCTGGTTCCATGTGTATATACGTTGTACATGCCACTGTAGTTATGATTGTCATCTGTTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAGCTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATGGCTCATCACA-CTGAAGCTGCAAAGGACGCAGCAGGCAGCAGCAACAATGCTGCGCAGGAACTACTCTTGTAAGCAAGAGCAGCTTCTGTAGCGAGCAAAAGTCATACCGTTATAGCCGGACAGAGATGTATCATATGTACA-TATATCCTTGCATCTGTGGCCATGTGTATCCTACTCCCTGAATCCTCTTCTGTAAATTCCAAACCATCTCGCGTGCTCGCCTGCCTTTCTCTGAATGATTCTTAATGCAATGTAAGAAGGGATGTTGCCCGCGTATGGGTGTGTTTAGTTCACGCTAAATAAAAAGGA]
[+] EMBL CB000993 [CAGTGCGTATGATATAGCTTTTCTACTGTTATCTGGGCACTGCATTGCTATCGCACTAGTGGACAAAACAAAATTGAATTCCTCATGGAGCAATGATCTACAAGATATGCAACAGTTCAGTGAGGATTCAGATTACATGGGGCATTATGTTGTAATATGTGGGTATGATGCTGATGCTTGCGAATTTGAGATAAGGGACCCTGCCAGTTCGAGACAGCGTGAAAGGGTGTCAATGAAGAGCTTAGATCAGGCCCGCAAGTCCTTTGGAACTGATGAGGATATTATTTTGGTTTCTTTAACTGGAAAAATTGGAATGAAGCTCTCACGTAAACTCCTGGTGGGCTCCTTGTGAAAACCTCAACTCCCTGGTTCCATGTGTATATACGTTGTACATGCCACTGTAGTTATGATTGTCATCTGTTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAGCTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATGGCTCATCACA CTGAAGCTGCAAAGGACGCAGCAGGCAGCAGCAACAATGCTGCGCAGGAACTACTCTTGTAAGCAAGAGCAGCTTCTGTAGCGAGCAAAAGTCATACCGTTATAGCCGGACAGAGATGTATCATATGTACA TATAT ]
[-] EMBL CB654664 [ TGCTATCGCACTAGTGGACAAAACAAAATTGAATTCCTCATGGAGCAATGATCTACAAGATATGCAACAGTTCAGTGAGGATTCAGATTACATGGGGCATTATGTTGTAATATGTGGGTATGATGCTGATGCTTGCGAATTTGAGATAAGGGACCCTGCCAGTTCGAGACAGCGTGAAAGGGTGTCAATGAAGAGCTTAGATCAGGCCCGCAAGTCCTTTGGAACTGATGAGGATATTATTTTGGTTTCTTTAACTGGAAAAATTGGAATGAAGCTCTCACGTAAACTCCTGGTGGGCTCCTTGTGAAAACCTCAACTCCCTGGTTCCATGTGTATATACGTTGTACATGCCACTGTAGTTATGATTGTCATCTGTTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAGCTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATGGCTCATCACA CTGAAGCTGCAAAGGACGCAGCAGGCAGCAGCAACAATGCTGCGCAGGAACTACTCTTGTAAGCAAGAGCAGCTTCTGTAGCGAGCAAAAGTCATACCGTTATAGCCGGACAGAGATGTATCATATGTACA TATATCCTTGCATCTGTGGCCATGTGTATCCTACTCCCTGAATCCTCTTCTGTAAATTCCAAACCATCTCGCGTGCTCGCCTGCCTTTCTCTGAATGATTCTTAATGCAATGTAAGAAGGGA AAGGCCCGCGTATGGGTGTGTTTAGTTCACGCTAAATAAAAAGGA]
[-] EMBL CB641856 [ AATTCCTCATGGAGCAATGATCTACAAGATATGCAACAGTTCAGTGAGGATTCAGATTACATGGGGCATTATGTTGTAATATGTGGGTATGATGCTGATGCTTGCGAATTTGAGATAAGGGACCCTGCCAGTTCGAGACAGCGTGAAAGGGTGTCAATGAAGAGCTTAGATCAGGCCCGCAAGTCCTTTGGAACTGATGAGGATATTATTTTGGTTTCTTTAACTGGAAAAATTGGAATGAAGCTCTCACGTAAACTCCTGGTGGGCTCCTTGTGAAAACCTCAACTCCCTGGTTCCATGTGTATATACGTTGTACATGCCACTGTAGTTATGATTGTCATCTGTTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAGCTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATGGCTCATCACA CTGAAGCTGCAAAGGACGCAGCAGGCAGCAGCAACAATGCTGCGCAGGAACTACTCTTGTAAGCAAGAGCAGCTTCTGTAGCGAGCAAAAGTCATACCGTTATAGCCGGACAGAGATGTATCATATGTACA TATATCCTTGCATCTGTGGCCATGTGTATCCTACTCCCTGAATCCTCTTCTGTAAATTCCAAACCATCTCGCGTGCTCGCCTGCCTTTCTCTGAATGATTCTTAATGCAATGTAAGAAGGGATGTTGCCCGCGTATGGGTGTGTTTAGTTCACGCTAAAattgaaa ]
[+] EMBL BM421481 [ gCTGTAGTTATGATTGTCATCTGTTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAGCTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATGGCTCATCACACCTGAAGCTGCAAAGGACGCAGCAGGCAGCAGCAACAATGCTGCGCAGGAACTACTCTTGTAAGCAAGAGCAGCTTCTGTAGCGAGC AAAGTCATACCGTTATAGCCGGACAGAGATGTATCATATGTACATTATATCCTTGCATCTGTGGCCATGTGTATCCTACTCCCTGAATCCTCTTCTGTAAATTCCAAACCATCTAGCGTGCTCGCCT CCTTTCTCTGAATGATTCTTAATGC ATGTAAGAAGGGATGTTGCCCGTGTATGGGTGTGTTTtaaaaa ]
consensusID : consensus_12998#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[CACCCCATACGCGGGCNACCTCCCTTCTTACNTTGCATTAAGAATCATTCAGAGAAAGGCAGGCGAGCACGCGAGATGGTTTGGAATTTACAGAAAANGATTCNGGGAGTNTGATACACNTGGCCACAGATGCAAGGATATATGTTCATATGATACATCTCTGTCCGGCTATAACGGTNTGACTTTTGCTCNCTACAGAANCTGCTCTTGCTTNCAANANTATTTCCNGCGCACCATTGTTNCTGCTGCCTGCTGCGTCCTTTGCAGCTTCAGTGTGATGAGCCNTGANCTNACNAACCTNACTGGGTTCTTCNCTAGCTCNCAGTTCCTATAGCTGTTAGAATGATCTTGAACTACATNCCTGACTTAACAGATNACAATCNTTACTNCCGTGGCCTGTTCNACNTTTATNCNCCTTGAACCCCNGGATTTGAAGTTTTCCCCANGANCCCCCCCCNGAATTTNCCTNAAAACCTCCCTCCCATTTTTCCCNTTTAAGAAACCCCNAATTATTTCCCCCTCCNTTCCCAAAGGAACTTGCCGGGGCCTGATCTAANCTCCTCCCTTGAACNCCCCTTTNCCCCCCTNTTCTCCCAAACTGGGCCNGG]
[+] EMBL BE229824 [CACCCCATACGCGGGCNACCTCCCTTCTTACNTTGCATTAAGAATCATTCAGAGAAAGGCAGGCGAGCACGCGAGATGGTTTGGAATTTACAGAAAANGATTCNGGGAGTNTGATACACNTGGCCACAGATGCAAGGATATATGTTCATATGATACATCTCTGTCCGGCTATAACGGTNTGACTTTTGCTCNCTACAGAANCTGCTCTTGCTTNCAANANTATTTCCNGCGCACCATTGTTNCTGCTGCCTGCTGCGTCCTTTGCAGCTTCAGTGTGATGAGCCNTGANCTNACNAACCTNACTGGGTTCTTCNCTAGCTCNCAGTTCCTATAGCTGTTAGAATGATCTTGAACTACATNCCTGACTTAACAGATNACAATCNTTACTNCCGTGGCCTGTTCNACNTTTATNCNCCTTGAACCCCNGGATTTGAAGTTTTCCCCANGANCCCCCCCCNGAATTTNCCTNAAAACCTCCCTCCCATTTTTCCCNTTTAAGAAACCCCNAATTATTTCCCCCTCCNTTCCCAAAGGAACTTGCCGGGGCCTGATCTAANCTCCTCCCTTGAACNCCCCTTTNCCCCCCTNTTCTCCCAAACTGGGCCNGG]
consensusID : consensus_12998#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[CGAGACTCCCAACCTCCTCCTCCGCTTTCCCTCCTTTCTCCTTCCCACCCGCGCTACCGAGCAGAGCACTGCTTGGCTCGGCTGGCTCTTGCGGTTCGAGGTCAGTCGCCTGGCGCCGCGCGCGGCGGGCGAGGGGGTCGGTTGATGGTGCCATGTGGCCCCTGGGGTTCTTCTCCGAGAGGCTGTTCAAGGTCGCGGGGGAAGGGGACGGCGGCGAGGGGGCGGACGACTCGCCGCCGGCCCCTGACGGCCGTGTCCCTCTAGCCCGCCGCTCGTACTACGTCGATGTTCCGCATGTCCAGCAGGCCTTCACGTGGGACTGCGGCCTCGCTTGCGTGCTCATGGTGCTCATGACACTCGGGATGGATTGCTGCGACGGCATTGCCGATCTCGAGAAGCTCTGCCGCACCACGAGCATATGGACAGTTGACTTGGCATATCTGTTAAACAGGTTTTCAATTTGCTTTTCCTTCTTCACTGTGACTCTAGGAGCAAATCCGCAATATTCTGCTGAAACCTTTTATAG]
[+] EMBL CB654663 [CGAGACTCCCAACCTCCTCCTCCGCTTTCCCTCCTTTCTCCTTCCCACCCGCGCTACCGAGCAGAGCACTGCTTGGCTCGGCTGGCTCTTGCGGTTCGAGGTCAGTCGCCTGGCGCCGCGCGCGGCGGGCGAGGGGGTCGGTTGATGGTGCCATGTGGCCCCTGGGGTTCTTCTCCGAGAGGCTGTTCAAGGTCGCGGGGGAAGGGGACGGCGGCGAGGGGGCGGACGACTCGCCGCCGGCCCCTGACGGCCGTGTCCCTCTAGCCCGCCGCTCGTACTACGTCGATGTTCCGCATGTCCAGCAGGCCTTCACGTGGGACTGCGGCCTCGCTTGCGTGCTCATGGTGCTCATGACACTCGGGATGGATTGCTGCGACGGCATTGCCGATCTCGAGAAGCTCTGCCGCACCACGAGCATATGGACAGTTGACTTGGCATATCTGTTAAACAGGTTTTCAATTTGCTTTTCCTTCTTCACTGTGACTCTAGGAGCAAATCCGCAATATTCTGCTGAAACCTTTTATAG]
consensusID : consensus_12998#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[AACCTCAACTCCCTGGTTCCCATGTGTATATACGTTGTACATGCCCACTGTAGTTATGATTGTCCATCTGTTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAGCTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATGGCTCATCACACTGAAGCTGCAAAGGACGCAGCAGGCAGCAGCAACAATGTGCGCAGGAACTACTCTTGTAAGCAAGAGCAGCTTCTGTAGCGAGCAAAAGTCATACCGTTATAGCCGGACAGAGATGTATCATATGTACATATATCCTTGCATCTGTGGCCATGTGTATCCTACTCCCTGAATCCTCTTCTGTAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97873 [AACCTCAACTCCCTGGTTCCCATGTGTATATACGTTGTACATGCCCACTGTAGTTATGATTGTCCATCTGTTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAGCTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATGGCTCATCACACTGAAGCTGCAAAGGACGCAGCAGGCAGCAGCAACAATGTGCGCAGGAACTACTCTTGTAAGCAAGAGCAGCTTCTGTAGCGAGCAAAAGTCATACCGTTATAGCCGGACAGAGATGTATCATATGTACATATATCCTTGCATCTGTGGCCATGTGTATCCTACTCCCTGAATCCTCTTCTGTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12998#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence
[TTCCNTCCCTCCCTCCCACCGTCGTCTCGTCGCGAACCCGCGAGAATCCCAACCTCCTCCTCCGCTTTCCCTCCTTTNTCCTTCCCACCCGCGCTACCGAGCAGAGCACTGCTTGGTTCGGCTGGNTCTTGCGGTTCGAGGTCAGTNGACTGGNGCNGNGCGGTNGGTGCNAGGGTTTCGGTTNATGGTGC]
[+] EMBL OSC00432A [TTCCNTCCCTCCCTCCCACCGTCGTCTCGTCGCGAACCCGCGAGAATCCCAACCTCCTCCTCCGCTTTCCCTCCTTTNTCCTTCCCACCCGCGCTACCGAGCAGAGCACTGCTTGGTTCGGCTGGNTCTTGCGGTTCGAGGTCAGTNGACTGGNGCNGNGCGGTNGGTGCNAGGGTTTCGGTTNATGGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12998#0 ------------------------------------------------------------
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 CAGTGCGTATGATATAGCTTTTCTACTGTTATCTGGGCACTGCATTGCTATCGCACTAGT 60
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 ------------------------------------------------------------
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 GGACAAAACAAAATTGAATTCCTCATGGAGCAATGATCTACAAGATATGCAACAGTTCAG 120
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 ------------------------------------------------------------
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 TGAGGATTCAGATTACATGGGGCATTATGTTGTAATATGTGGGTATGATGCTGATGCTTG 180
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 ------------------------------------------------------------
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 CGAATTTGAGATAAGGGACCCTGCCAGTTCGAGACAGCGTGAAAGGGTGTCAATGAAGAG 240
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 ---------------------------------CACGCACCGGAGCGAGAAGAAGAAGAA 27
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 CTTAGATCAGGCCCGCAAGTCCTTTGGAACTGATGAGGATATTATTTTGGTTTCTTTAAC 300
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------CACCCCATACGCGGGCNACCTCCC 24
consensus_12998#0 CCCAATCATTTCCCTCCCTCCCTCCCACCGTCGTCTCGTCGCGAACCCGCGAGAATCCCA 87
consensus_12998#3 -------------------------------------------------CGAGACTCCCA 11
consensus_12998#5 ---------TTCCNTCCCTCCCTCCCACCGTCGTCTCGTCGCGAACCCGCGAGAATCCCA 51
consensus_12998#1 TGGAAAAATTGGAATGAAGCTCTCACGTAAACTCCTGGTGGGCTCCTTGTGAAAACCTCA 360
consensus_12998#4 -----------------------------------------------------AACCTCA 7
consensus_12998#2 TTCTTACNTTGCATTAAGAATCATTCAGAGAAAGGCAGGCGAGCACGCGAGATGGTTTGG 84
consensus_12998#0 ACCTCCTCCTC--CGCTTTCCCTCCTTTCTCCTTCCCACCCGCGCTACCGAGCAGAGCAC 145
consensus_12998#3 ACCTCCTCCTC--CGCTTTCCCTCCTTTCTCCTTCCCACCCGCGCTACCGAGCAGAGCAC 69
consensus_12998#5 ACCTCCTCCTC--CGCTTTCCCTCCTTTNTCCTTCCCACCCGCGCTACCGAGCAGAGCAC 109
consensus_12998#1 ACTCCCTGGTT--CC-ATGTGTATATACGTTGTACATGCC-ACTGTAGTTATGATTGT-C 415
consensus_12998#4 ACTCCCTGGTT--CCCATGTGTATATACGTTGTACATGCCCACTGTAGTTATGATTGT-C 64
consensus_12998#2 AATTTACAGAAAANGATTCNGGGAGTNTGATACACNTGGCCACAGATGCAAGGATATATG 144
* * * * * * * *
consensus_12998#0 TGCTTGGCTCGGCTGGCTCTTGCGGTTCGAGGTCAGTCGCCTGGCGCCGCGCGCGGCGGG 205
consensus_12998#3 TGCTTGGCTCGGCTGGCTCTTGCGGTTCGAGGTCAGTCGCCTGGCGCCGCGCGCGGCGGG 129
consensus_12998#5 TGCTTGGTTCGGCTGGNTCTTGCGGTTCGAGGTCAGTNGACTGGNGCNGNGCGGTNGGTG 169
consensus_12998#1 -ATCTG--TTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAG 472
consensus_12998#4 CATCTG--TTAAGTCATGTATGTAGTTCAAGATCATTCTTACAGCTATAGGAACTGTGAG 122
consensus_12998#2 TTCATATGATACATCTCTGTCCGGCTATAACGGTNTGACTTTTGCTCNCTACAGAANCTG 204
* * * * * *
consensus_12998#0 CGAGGGGGTCGGTTGATGGTGCCATGTGGCCCCTGGGGTTCTTCTCCGAGAGGCTGTTCA 265
consensus_12998#3 CGAGGGGGTCGGTTGATGGTGCCATGTGGCCCCTGGGGTTCTTCTCCGAGAGGCTGTTCA 189
consensus_12998#5 CNAGGGTTTCGGTTNATGGTGC-------------------------------------- 191
consensus_12998#1 CTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATG--GCTCATCACACTGAAGCTGCA-A 529
consensus_12998#4 CTAGTGAAGTACCCAGTTAGGTTTGTTAGCTCATG--GCTCATCACACTGAAGCTGCA-A 179
consensus_12998#2 CTCTTGCTTNCAANANTATTTCCNGCGCACCATTGTTNCTGCTGCCTGCTGCGTCCTTTG 264
* * *
consensus_12998#0 AGGTCGCGGGGGAAGGGGACGGCGGCGAGGGGGCGGACGACTCGCCGCCGGCCCCTGACG 325
consensus_12998#3 AGGTCGCGGGGGAAGGGGACGGCGGCGAGGGGGCGGACGACTCGCCGCCGGCCCCTGACG 249
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 AGGACGCAG---CAGGCAGCAGCAACAATGCTGCGCAGGAACTACT-CTTGTAAGCAAGA 585
consensus_12998#4 AGGACGCAG---CAGGCAGCAGCAACAATG-TGCGCAGGAACTACT-CTTGTAAGCAAGA 234
consensus_12998#2 CAGCTTCAG----TGTGATGAGCCNTGANCTNACNAACCTNACTGGGTTCTTCNCTAGCT 320
consensus_12998#0 GCCGTGTCCCTCTAGCCCGCCGCTCGTACTACGTCGATGTTCCGCATGTCCAGCAGGCCT 385
consensus_12998#3 GCCGTGTCCCTCTAGCCCGCCGCTCGTACTACGTCGATGTTCCGCATGTCCAGCAGGCCT 309
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 GCAGCTTCTGTAGCGAGCAAAAGTCATACC--------GTTATAGCCGGACAGAGATGTA 637
consensus_12998#4 GCAGCTTCTGTAGCGAGCAAAAGTCATACC--------GTTATAGCCGGACAGAGATGTA 286
consensus_12998#2 CNCAGTTCCTATAGCTGTTAGAATGATCTTGAACTACATNCCTGACTTAACAGATNACAA 380
consensus_12998#0 TCACGTGGGACTGCGGCCTCGCTTGCGTGCTCATGGTGCTCAGGACACTCGGGATGGATT 445
consensus_12998#3 TCACGTGGGACTGCGGCCTCGCTTGCGTGCTCATGGTGCTCATGACACTCGGGATGGATT 369
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 TCATATGTACATATATCCTTGCATCTGTGGCCATG-TGTATCCTACTCCCTGAATCCTCT 696
consensus_12998#4 TCATATGTACATATATCCTTGCATCTGTGGCCATG-TGTATCCTACTCCCTGAATCCTCT 345
consensus_12998#2 TCNT-TACTNCCGTGGCCTGTTCNACNTTTATNCNCCTTGAACCCCNGGATTTGAAGTTT 439
consensus_12998#0 GCTGCGACGGCATTGCCGATCTCGAGAAGCTCTGCCGCACCACGAGGTTCCTCTC--TTG 503
consensus_12998#3 GCTGCGACGGCATTGCCGATCTCGAGAAGCTCTGCCGCACCACGAGCATATGGACAGTTG 429
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 TCTGTAA-ATTCCAAACCATCTCGCGTGCTCGCCTGCCTTTCTCTGAATGATTCTTAATG 755
consensus_12998#4 TCTGTAA-AAAAAAAAAAAAAAAAA----------------------------------- 369
consensus_12998#2 TCCCCANGANCCCCCCCCNGAATTTNCCTNAAAACCTCCCTCCCATTTTTCCCNTTTAAG 499
consensus_12998#0 GACTAGATTATTACTTCAAATTTGAGTTTACAACTAAACACGGGGGGCGCAATTCTCCTT 563
consensus_12998#3 ACTTGGCATATCTGTTAAA---CAGGTTTTCAATT-----TGCTTTTCCTTCTTCACTGT 481
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 CAATGTAAGAAGGGATGTTGCCCGCGTATGGGTGTGTTTAGTTCACGCTAAATAAAAAGG 815
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 AAACCCCNAATTATTTCCCCCTCCNTTCCCAAAGGAACTTGCCGGGGCCTGATCTAANCT 559
consensus_12998#0 AGTTAATGAAAAAAATT---GATACCCCGAATCATTTGTTTATTCATGGATAATTATTCT 620
consensus_12998#3 GACTCTAGGAGCAAATCCGCAATATTCTGCTGAAACCTTTTATAG--------------- 526
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 A----------------------------------------------------------- 816
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 CCTCCCTTGAACNCCCCTTTNCCCCCCTNTTCTCCCAAACTGGGCCNGG----------- 608
consensus_12998#0 TCTTTTCTTTATGAGATTGCGTGGATAACGAACAGTGATTACTCTGTCAGTTCATGAATG 680
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 CTTGTTACTACTTTGACCACTTGATTGTTCCCACATTTTGCACTGCATAATCACTTTTAT 740
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 CCGGTGTAGTTAAAATGCTCTTTGCAAATAATTCCATCTTAGGTGAAAATTAATTTGGAA 800
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 GAGAATAAAAAATTGTGCATTTCAATTGTAATATGACAATTATTTATGAGGACATAAAGT 860
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 AGCTTAGACGTGAGAAATATTCGTGGATATATTATATTGCAATACAATCATTCCCTAGAT 920
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 GAGCTGGACATAATATTTAATTCTCTTTAATTTTGGCCTATTAAAAATTTTAATAGCACG 980
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 TCTGGTGTATTAACAATCTGACATTTCTGGGTTGTGCAGCATATGGACAGTTGACTTGGC 1040
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 ATATCTGTTAAACAGGTTTTCAGTTTGTTTTTCCTTCTTCACTGTGACTCTAGGAGCAAA 1100
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 TCCGCAATATTCTGCTGAAACCTTTTATAGGGAGCAATTGCAAGAAGACATTGATCGAGT 1160
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 GGATGAGCTCTTTGGCAGAGCCTTGAAGCTGGAATTAGTATTCAATGCAGATCCATCAGT 1220
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 GCGTATGATATAGCTTTTCTACTGTTATCTGGGCACTGCATTGCTATCGCACTAGTGGAC 1280
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 AAAACAAAATTGAAGTAAGGGATTTTTTTGGTCATAGCAAGTGAGATGAAGTATACTTTG 1340
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 TTCTGTATTTCTGTCAATACTTTTACTCCTTTAAGACAGTCTTACATTTGTCTTCGGCAT 1400
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 TCAGACATCGCCTCATAAGCAAGTTGTCCAATGGTAAATGCAATGGGTGGACAATGTTAC 1460
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 TTGCTGTACTTGTCTCATTTTAATATCTCAAATTCTTTTGATTTAACGGTCATAAGGTGA 1520
consensus_12998#3 ------------------------------------------------------------
consensus_12998#5 ------------------------------------------------------------
consensus_12998#1 ------------------------------------------------------------
consensus_12998#4 ------------------------------------------------------------
consensus_12998#2 ------------------------------------------------------------
consensus_12998#0 TTATTAGTTTAATATTTTGCAACCGTGCCAACATTATGTA 1560
consensus_12998#3 ----------------------------------------
consensus_12998#5 ----------------------------------------
consensus_12998#1 ----------------------------------------
consensus_12998#4 ----------------------------------------
consensus_12998#2 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||