These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCGGTTCATCGTACAAAAGAGGAGAGAGAGGGTGATGGCGCCCCTGCTCTCCCGTGTCGTGGAGACGCCCGCGTCGTCGCCGTGGTTCCTCGGCTCGCCGTTCCGGGTGGAGGCCGTGGAGTGCAAGAAGCCGGCGGCGGAGGCGGCGCTGTCTCCGGCGGAGCTGGAGCTGAGCTGGGTGGTCGTCGACCCTGCCCGCGGCCGAGCGGTGAACGTGTCCAGCCGGCGCGCCGTGGCGGTGGACCGGCACTGGTACACCGGCGAGACGCTGGTGAGGTTCGCGGTGGTGCTGGGCGGGTGCAAGTTCGAGACCACCGTGACCTGCTCCGAGGGGGCCGGCAACATCAGCGAGGTCAGCCTCGCCGTGCAGGACGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCACCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCATGTTCCAATCTCATGTAGTAGTGCTTTTTTACGTTTCAATTTGAAAAAGAAAGAGTAATGTTTTCCCTTCAAATAAT] [+] EMBL AK121479 [CCGGTTCATCGTACAAAAGAGGAGAGAGAGGGTGATGGCGCCCCTGCTCTCCCGTGTCGTGGAGACGCCCGCGTCGTCGCCGTGGTTCCTCGGCTCGCCGTTCCGGGTGGAGGCCGTGGAGTGCAAGAAGCCGGCGGCGGAGGCGGCGCTGTCTCCGGCGGAGCTGGAGCTGAGCTGGGTGGTCGTCGACCCTGCCCGCGGCCGAGCGGTGAACGTGTCCAGCCGGCGCGCCGTGGCGGTGGACCGGCACTGGTACACCGGCGAGACGCTGGTGAGGTTCGCGGTGGTGCTGGGCGGGTGCAAGTTCGAGACCACCGTGACCTGCTCCGAGGGGGCCGGCAACATCAGCGAGGTCAGCCTCGCCGTGCAGGACGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCACCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCATGTTCCAATCTCATGTAGTAGTGCTTTTTTACGTTTCAATTTGAAAAAGAAAGAGTAATGTTTTCCCTTCAAATAAT] consensusID : consensus_130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [GCGGCAATGGAGGAACAGAGGATAGGCGGGGGGAGAGAACGGGACGAGGCGAAGAGGAGGTATGACGAGTTCGTGAAGAGCAGGAAGGGGAGGAAGGAGAGCAAGGCGCGACGCGAGGCGCTCATCGACCTGTGCTGCTCCGCCGCCAGCGCCATGGCCGTGCTGAGCTTCGTCGCCGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCNCCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCATGTTCCAATCTCAAAAA] [+] EMBL AU166976 [GCGGCAATGGAGGAACAGAGGATAGGCGGGGGGAGAGAACGGGACGAGGCGAAGAGGAGGTATGACGAGTTCGTGAAGAGCAGGAAGGGGAGGAAGGAGAGCAAGGCGCGACGCGAGGCGCTCATCGACCTGTGCTGCTCCGCCGCCAGCGCCATGGCCGTGCTGAGCTTCGTCGCCGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCNCCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCATGTTCCAATCTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_130#0 CCGGTTCATCGTACAAAAGAGGAGAGAGAGGGTGATGGCGCCCCTGCTCTCCCGTGTCGT 60 consensus_130#1 ------------------------------------------------------------ consensus_130#0 GGAGACGCCCGCGTCGTCGCCGTGGTTCCTCGGCTCGCCGTTCCGGGTGGAGGCCGTGGA 120 consensus_130#1 ------------------------------------------------------------ consensus_130#0 GTGCAAGAAGCCGGCGGCGGAGGCGGCGCTGTCTCCGGCGGAGCTGGAGCTGAGCTGGGT 180 consensus_130#1 ------------------------------------------------------------ consensus_130#0 GGTCGTCGACCCTGCCCGCGGCCGAGCGGTGAACGTGTCCAGCCGGCGCGCCGTGGCGGT 240 consensus_130#1 -----GCGGCAATG--GAGGAACAGAGGATAGGCGGGGGGAGAGAACGGGACGAGGCGAA 53 ** * ** * * * * ** * ** ** * ** **** consensus_130#0 GGACCGGCACTGGTACACCGGCGAGACGCTGGTGAGGTTCGCGGTGGTGCTGGGCG-GGT 299 consensus_130#1 GAGGAGGTA-TGACGAGTTCGTGAAGAGCAGGAAGGGGAGGAAGGAGAGCAAGGCGCGAC 112 * ** * ** * ** ** ** ** * * * ** **** * consensus_130#0 GCAAGTTCGAGACCACCGTGACCTGCTCCGAGGGGGCCGGCAACATCAGCGAGGTCAGCC 359 consensus_130#1 GCGAGGCGCTCATCGACCTGTGCTGCTCCGCCG---CCAGCGCCATGGCCGTGCTGAGCT 169 ** ** * * * ** ******** * ** ** *** ** * * *** consensus_130#0 TCGCCGTGCAGGACGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAG 419 consensus_130#1 TCGTCGC------CGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAG 223 *** ** *********************************************** consensus_130#0 GACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTT 479 consensus_130#1 GACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTT 283 ************************************************************ consensus_130#0 TTCTTCCACCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCC 539 consensus_130#1 TTCTTCCNCCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCC 343 ******* **************************************************** consensus_130#0 ATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAG 599 consensus_130#1 ATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAG 403 ************************************************************ consensus_130#0 AATTGACATTGTTCGCATGTTCCAATCTCATGTAGTAGTGCTTTTTTACGTTTCAATTTG 659 consensus_130#1 AATTGACATTGTTCGCATGTTCCAATCTCAAAAA-------------------------- 437 ****************************** * consensus_130#0 AAAAAGAAAGAGTAATGTTTTCCCTTCAAATAAT 693 consensus_130#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||