cluster # 130

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 130 cluster # 130 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_130#0 length = 693 sequences # 1

consensus_130#1 length = 437 sequences # 1

consensusID : consensus_130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CCGGTTCATCGTACAAAAGAGGAGAGAGAGGGTGATGGCGCCCCTGCTCTCCCGTGTCGTGGAGACGCCCGCGTCGTCGCCGTGGTTCCTCGGCTCGCCGTTCCGGGTGGAGGCCGTGGAGTGCAAGAAGCCGGCGGCGGAGGCGGCGCTGTCTCCGGCGGAGCTGGAGCTGAGCTGGGTGGTCGTCGACCCTGCCCGCGGCCGAGCGGTGAACGTGTCCAGCCGGCGCGCCGTGGCGGTGGACCGGCACTGGTACACCGGCGAGACGCTGGTGAGGTTCGCGGTGGTGCTGGGCGGGTGCAAGTTCGAGACCACCGTGACCTGCTCCGAGGGGGCCGGCAACATCAGCGAGGTCAGCCTCGCCGTGCAGGACGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCACCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCATGTTCCAATCTCATGTAGTAGTGCTTTTTTACGTTTCAATTTGAAAAAGAAAGAGTAATGTTTTCCCTTCAAATAAT]

[+] EMBL AK121479             [CCGGTTCATCGTACAAAAGAGGAGAGAGAGGGTGATGGCGCCCCTGCTCTCCCGTGTCGTGGAGACGCCCGCGTCGTCGCCGTGGTTCCTCGGCTCGCCGTTCCGGGTGGAGGCCGTGGAGTGCAAGAAGCCGGCGGCGGAGGCGGCGCTGTCTCCGGCGGAGCTGGAGCTGAGCTGGGTGGTCGTCGACCCTGCCCGCGGCCGAGCGGTGAACGTGTCCAGCCGGCGCGCCGTGGCGGTGGACCGGCACTGGTACACCGGCGAGACGCTGGTGAGGTTCGCGGTGGTGCTGGGCGGGTGCAAGTTCGAGACCACCGTGACCTGCTCCGAGGGGGCCGGCAACATCAGCGAGGTCAGCCTCGCCGTGCAGGACGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCACCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCATGTTCCAATCTCATGTAGTAGTGCTTTTTTACGTTTCAATTTGAAAAAGAAAGAGTAATGTTTTCCCTTCAAATAAT]




>consensus_130#0
CCGGTTCATCGTACAAAAGAGGAGAGAGAGGGTGATGGCGCCCCTGCTCTCCCGTGTCGT
GGAGACGCCCGCGTCGTCGCCGTGGTTCCTCGGCTCGCCGTTCCGGGTGGAGGCCGTGGA
GTGCAAGAAGCCGGCGGCGGAGGCGGCGCTGTCTCCGGCGGAGCTGGAGCTGAGCTGGGT
GGTCGTCGACCCTGCCCGCGGCCGAGCGGTGAACGTGTCCAGCCGGCGCGCCGTGGCGGT
GGACCGGCACTGGTACACCGGCGAGACGCTGGTGAGGTTCGCGGTGGTGCTGGGCGGGTG
CAAGTTCGAGACCACCGTGACCTGCTCCGAGGGGGCCGGCAACATCAGCGAGGTCAGCCT
CGCCGTGCAGGACGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGG
ACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTT
TCTTCCACCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCA
TTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGA
ATTGACATTGTTCGCATGTTCCAATCTCATGTAGTAGTGCTTTTTTACGTTTCAATTTGA
AAAAGAAAGAGTAATGTTTTCCCTTCAAATAAT

consensusID : consensus_130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [GCGGCAATGGAGGAACAGAGGATAGGCGGGGGGAGAGAACGGGACGAGGCGAAGAGGAGGTATGACGAGTTCGTGAAGAGCAGGAAGGGGAGGAAGGAGAGCAAGGCGCGACGCGAGGCGCTCATCGACCTGTGCTGCTCCGCCGCCAGCGCCATGGCCGTGCTGAGCTTCGTCGCCGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCNCCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCATGTTCCAATCTCAAAAA]

[+] EMBL AU166976             [GCGGCAATGGAGGAACAGAGGATAGGCGGGGGGAGAGAACGGGACGAGGCGAAGAGGAGGTATGACGAGTTCGTGAAGAGCAGGAAGGGGAGGAAGGAGAGCAAGGCGCGACGCGAGGCGCTCATCGACCTGTGCTGCTCCGCCGCCAGCGCCATGGCCGTGCTGAGCTTCGTCGCCGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCNCCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCATGTTCCAATCTCAAAAA]




>consensus_130#1
GCGGCAATGGAGGAACAGAGGATAGGCGGGGGGAGAGAACGGGACGAGGCGAAGAGGAGG
TATGACGAGTTCGTGAAGAGCAGGAAGGGGAGGAAGGAGAGCAAGGCGCGACGCGAGGCG
CTCATCGACCTGTGCTGCTCCGCCGCCAGCGCCATGGCCGTGCTGAGCTTCGTCGCCGCC
GTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAGGACAAAATGTGGCCTTC
TCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTTTTCTTCCNCCGTAGTTA
CATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCCATTTAAAATAGGAGATA
AAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAGAATTGACATTGTTCGCA
TGTTCCAATCTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_130#0      CCGGTTCATCGTACAAAAGAGGAGAGAGAGGGTGATGGCGCCCCTGCTCTCCCGTGTCGT 60
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      GGAGACGCCCGCGTCGTCGCCGTGGTTCCTCGGCTCGCCGTTCCGGGTGGAGGCCGTGGA 120
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      GTGCAAGAAGCCGGCGGCGGAGGCGGCGCTGTCTCCGGCGGAGCTGGAGCTGAGCTGGGT 180
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      GGTCGTCGACCCTGCCCGCGGCCGAGCGGTGAACGTGTCCAGCCGGCGCGCCGTGGCGGT 240
consensus_130#1      -----GCGGCAATG--GAGGAACAGAGGATAGGCGGGGGGAGAGAACGGGACGAGGCGAA 53
                           ** *  **     *  *    * *   ** *   **    ** * ** ****  

consensus_130#0      GGACCGGCACTGGTACACCGGCGAGACGCTGGTGAGGTTCGCGGTGGTGCTGGGCG-GGT 299
consensus_130#1      GAGGAGGTA-TGACGAGTTCGTGAAGAGCAGGAAGGGGAGGAAGGAGAGCAAGGCGCGAC 112
                     *    ** * **        * **   ** **   **   *  *  * **  **** *  

consensus_130#0      GCAAGTTCGAGACCACCGTGACCTGCTCCGAGGGGGCCGGCAACATCAGCGAGGTCAGCC 359
consensus_130#1      GCGAGGCGCTCATCGACCTGTGCTGCTCCGCCG---CCAGCGCCATGGCCGTGCTGAGCT 169
                     ** **      * *  * **  ********  *   ** **  ***   ** * * *** 

consensus_130#0      TCGCCGTGCAGGACGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAG 419
consensus_130#1      TCGTCGC------CGCCGTGGTGCTCCGGTGATCGGCGGCTGCGGTTAGGAAAAAGAGAG 223
                     *** **       ***********************************************

consensus_130#0      GACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTT 479
consensus_130#1      GACAAAATGTGGCCTTCTCTTCATCAGTGTACAAATCGAGCAGAGAACTCGCGTGTATTT 283
                     ************************************************************

consensus_130#0      TTCTTCCACCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCC 539
consensus_130#1      TTCTTCCNCCGTAGTTACATTATTCTTAAACTATAAAAATTGGCCAGGTGCTTATCATCC 343
                     ******* ****************************************************

consensus_130#0      ATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAG 599
consensus_130#1      ATTTAAAATAGGAGATAAAACACCTGAGCTGATCCTAGGATGTGACATTAAGCCTAGTAG 403
                     ************************************************************

consensus_130#0      AATTGACATTGTTCGCATGTTCCAATCTCATGTAGTAGTGCTTTTTTACGTTTCAATTTG 659
consensus_130#1      AATTGACATTGTTCGCATGTTCCAATCTCAAAAA-------------------------- 437
                     ******************************   *                          

consensus_130#0      AAAAAGAAAGAGTAATGTTTTCCCTTCAAATAAT 693
consensus_130#1      ----------------------------------