cluster # 13010

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Oryza sativa
cluster # 13010 cluster # 13010 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13010#0 length = 1823 sequences # 9

consensus_13010#1 length = 875 sequences # 2
consensus_13010#2 length = 607 sequences # 1

consensusID : consensus_13010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1823
fasta sequence

                              [CCAGTGCAGGGGACCAAAGAAAGGCACTACTCCGTCGTGAAGGCTAAAAAGGGAGGGGGATCGAGGCGAGAGGAACGCCACCGAACCCAAACCCCATCCAATCAAAAATTCGTACGGGAGAGCTCTCGATTTGATCGCCGCGACCGCGAGGATGTACAAGTCGCGGCTGCAGGAGCTGTGCCAGCAGCGGCGGTGGGCGCCGCCGGAGTACACCCACCGGTGCGCGGGCCCCGCCCACGCCCCGCTCTTCGGCGCCACCGTCTCCGTCAACGGCGTGGAGTTCCGCACGCCGGAAGACGCCGCGCGGTCGGCCAAGGAGGCGCACAACATCGCCGCCAAGGCCGCCTTCGACCACCTCTCCTCCCTCCCGCTGCCGCCGCCTCCCCCTCCCTCCGAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGAAGGTCCAGGTCATGCATCTCGGTTCAAGTCAGTAGTGACTGTAGATGGCAAAGCATTTGAAAGTCCGGAATACTTTCACACAGTTAAGGAGGCTGAATCCGCTGCAGCAAAACTTGCTCTTATGTCCTTACCTCAAGAAGCAAGCTCATCGGAGCAAGTGCCGGTCCAGCCATTGTCATACAAGAATCTTCTACAAGAATTAGCTCAGAAACATGGCTTTTCCTTGCCTGTCTACAGCACAACTTCAGATGGATCAGTGCAGGTACCTATGTTCAAATCAACTGTGGTATTTCAGGATGGAAGTTTTCAGGGAGAACCAGCAAATACTAAGAAGCAAGCAGAGATGAATGCTGCTAGGGTTGCTTTTCAACATTTTGAAGACAGAAGAAAAAATGCTCTTTCTTCCACTGTTCTAAGAGGACCGCATTTGGGACAAGGAACAGTGCACATATCTGCTGGACAAGTCAAGATTGCAGAACCTGTTTTTTCAGTTCCCCTAGCATCAACAGCTACAAGCCACAGTGCAACTGGTGCTACAGATCGTGATTATCACTCCCTTGGCTCCACTAATCCCCTTCCAATTGCTAAGTCTACAAACTGCGCTGATGTACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCCAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCT-T-TCAGTGACGA-TGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCA-TTAAGGCAGAAGAA-AACTA-CGCCTTAGGAACGTT-GCGGTAGACA-AGAA-CTGGAGCCGGTGCTTTTGTGAAG-TTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAACCATGGTTATTAGCTTCGATGTTTAGACGGATGAACTCTTGTATCGTATCTACCTAATTAGTTGCCCAACTATCTTAGCAGC-AACGTGAA-TTGAACTTCTATTATAGTTCCCAACCTTAATTAACCGTGTTATATGTTTTTTTTATATAAAAAAAACAACTTAACTTTGTTGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C26824               [CCAGTGCAGGGGACCAAAGAAAGGCACTACTCCGTCGTGAAGGCTAAAAAGGGAGGGGGATCGAGGCGAGAGGAACGCCACCGAACCCAAACCCCATCCAATCAAAAATTCGTACGGGNGNGCTCTCGATTTGATCGTNGNGACCGCGAGGATGTACANGTNGTGGCTGCAGGNGCTGTGCCAGCAGCGATGGTGGGCGngcc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF326453             [                       GCACTACTCCGTCGTGAAGGCTAAAAAGGGAGGGGGATCGAGGCGAGAGGAACGCCACCGAACCCAAACCCCATCCAATCAAAAATTCGTACGGGAGAGCTCTCGATTTGATCGCCGCGACCGCGAGGATGTACAAGTCGCGGCTGCAGGAGCTGTGCCAGCAGCGGCGGTGGGCGCCGCCGGAGTACACCCACCGGTGCGCGGGCCCCGCCCACGCCCCGCTCTTCGGCGCCACCGTCTCCGTCAACGGCGTGGAGTTCCGCACGCCGGAAGACGCCGCGCGGTCGGCCAAGGAGGCGCACAACATCGCCGCCAAGGCCGCCTTCGACCACCTCTCCTCCCTCCCGCTGCCGCCGCCTCCCCCTCCCTCCGAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGAAGGTCCAGGTCATGCATCTCGGTTCAAGTCAGTAGTGACTGTAGATGGCAAAGCATTTGAAAGTCCGGAATACTTTCACACAGTTAAGGAGGCTGAATCCGCTGCAGCAAAACTTGCTCTTATGTCCTTACCTCAAGAAGCAAGCTCATCGGAGCAAGTGCCGGTCCAGCCATTGTCATACAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK069455             [                                                                            GCCACCGAACCCAAACCCCATCCAATCAAAAATTCGTACGGGAGAGCTCTCGATTTGATCGCCGCGACCGCGAGGATGTACAAGTCGCGGCTGCAGGAGCTGTGCCAGCAGCGGCGGTGGGCGCCGCCGGAGTACACCCACCGGTGCGCGGGCCCCGCCCACGCCCCGCTCTTCGGCGCCACCGTCTCCGTCAACGGCGTGGAGTTCCGCACGCCGGAAGACGCCGCGCGGTCGGCCAAGGAGGCGCACAACATCGCCGCCAAGGCCGCCTTCGACCACCTCTCCTCCCTCCCGCTGCCGCCGCCTCCCCCTCCCTCCGAAAACCAATCTTCTTACAAAAGTCAGTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGAAGGTCCAGGTCATGCATCTCGGTTCAAGTCAGTAGTGACTGTAGATGGCAAAGCATTTGAAAGTCCGGAATACTTTCACACAGTTAAGGAGGCTGAATCCGCTGCAGCAAAACTTGCTCTTATGTCCTTACCTCAAGAAGCAAGCTCATCGGAGCGAGTGCCGGTCCAGCCATTGTCATACAAGAATCTTCTACAAGAATTAGCTCAGAAACATGGCTTTTCCTTGCCTGTCTACAGCACAACTTCAGATGGATCAGTGCAGGTACCTATGTTCAAATCAACTGTGGTATTTCAGGATGGAAGTTTTCAGGGAGAACCAGCAAATACTAAGAAGCAAGCAGAGATGAATGCTGCTAGGGTTGCTTTTCAACATTTTGAAGACAGAAGAAAAAATGCTCTTTCTTCCACTGTTCTAAGAGGACCGCATTTGGGACAAGGAACAGTGCACATATCTGCTGGACAAGTCAAGATTGCAGAACCTGTTTTTTCAGTTCCCCTAGCATCAACAGCTACAAGCCACAGTGCAACTGGTGCTACAGATCGTGATTATCACTCCCTTGGCTCCACTAATCCCCTTCCAATTGCTAAGTCTACAAACTGCGCTGATGTACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCCAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCT T TCAGTGACGA TGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCA TTAAGGCAGAAGAA AACTA CGCCTTAGGAACGTT GCGGTAGACA AGAA CTGGAGCCGGTGCTTTTGTGAAG TTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAACCATGGTTATTAGCTTCGATGTTTAGACGGATGAACTCTTGTATCGTATCTACCTAATTAGTTGCCCAACTATCTTAGCAGC AACGTGAA TTGAACTTCTATTATAGTTCCCAACCTTAATTAACCGTGTTATATGTTTTTTTTATATAAAAAAAACAACTTA                                        ]
[+] EMBL CA764898             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ggggGGATC GTGCAGGTACCTATGTTCAAAT AACTGTGGTATTT AGGATGGAAGTTTTCAGGGAGAACCAGCAAATACTAAGAAGCAAGCAGAGATGAATGCTGCTAGGGTTGCTTTTCAACATTTCGAAGACAGAAGAAAAAATGCTCTTTCTTCCACTGTTCTAAGAGGACCGCATTTGGGACAAGGAACAGTGCACATATCTGCTGGACAAGTCAAGATCGCAGAACCTGTTTTTTCAGTTCCCCAAGCATCAACAGCTACAAGCCACAGTGCAACTGGTGCTACAGATCGTGATTATCACTCCCTTGGCTCCACTAATCCCCTTCCAATTGCTAAGTCTACAAACTGCGCTGATGTACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCCAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGNCAGNTCTACTGGATGCGGCTGCTNCTTGGTAACTAACCGAGTCCAGGTCTATNCACGCCGTCCTGACCTGGTATTGNCGGAGGGCGCGACCGGTCTTTCT                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BE225319             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCCAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCT T TCAGTGACGA TGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCA TTAAGGCAGAAGAA AACTA CGCCTTAGGAACGTT GCGGCAGACA AGAA CTGGAGCCGGTGCATTTGTGAAG TTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGA                                                                                                                                                                                                              ]
[-] EMBL CB663142             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCCAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTTTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCAAGTCCAGGTTTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCT T TCAGTGACGA TGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCA TTAAGGCAGAAGAA AACTA CGCCTTAGGAACGTT GCGGTAGACA AGAA CTGGAGCCGGTGCTTTTGTGAAG TTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAAGGGAACATGTCCATGCTGCAGGAACCATGGTTATTAGCTTCGATGTTTAGCCGGATGAACTCTTGTATCGTATCTACCTAATTAGTTGCCCCATTATCTTAGCAGCTCATGTGAAGTTGATCTTCTATTATAGTTCCCAACCTTAATTAACCGTGT                                                                         ]
[-] EMBL CF294666             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGCCTCAACCAGTACTGTCAGTTTTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTTTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCT T TCAGTGACGA TGTTTGGGTGGCAGTCAGCCTACCTACTTTCAACCA TTAAGGCAGAAGAA AACTA CGCCTTAGGAACGTT GCGGTAGACA AGAA CTGGAGCCGGTGCTTTTGTGAAG TTGTAGCTTTTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCAAAAAGCAGGAACCATGGTTATAAAAAAAGATGTTTAGACGGATGAAAAAAAGAATCGTATCTACCTAATTAGTTGCCCAACTATTTTAGCAGC AAAAAAAA ATGAACTTCTATTATAGTTCCCAACCTTAATTAACCGTGTTATATGTTTTTTTTATATAAAA                                                   ]
[+] EMBL C96940               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGNCCTGGTATTNCCGGAGGGCGCGACCNTTCTTCCT T TCAGTGACGA TGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCA TTAAGGCAGAAGAA AACTA CNCCTTAGGAACNTT GCGGTAGACA AGAA CTGGANCCGGTGCTTTTGTNAAG TTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAACCATGGTTATTAGCTTCGATGTTTAGACGGATGAACTCTTGTATCGTATCTNCCTAATTAGTTGCCCAACTATCTTAGCAGC AACGTGAA TTGAACTTCTATTATAGTTCCCAACCTTAATTAACCGTGTTATATGTTTTTTTTATAT AAAAAAACAACTTAACTTTGTTGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BQ908413             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCGACCGTTCTTCCTGTGTCAGTGACGANTGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCAGTTAAGGCAGAAGAANAACTAGCGCCTTAGGAACGTTGGCGGCAGACANAGAACCTGGAGCCGGTGCATTTGTGAAGCTTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAACCAT GTTATTAGCTACGATGTTTAGACGGATGAACTCTTGTATCGTATCTACCTAATTAGTTGCCCAACTATCTTAGCAGC AACGTGAA TTGAACTTCTATTATAGTTCCCAACCTTAATTAACCGTGTTATATGTTTTTTTTATAT AAAAAAACAACTTAACTTTGTTGGACAAAAAAAAA                   ]




>consensus_13010#0
CCAGTGCAGGGGACCAAAGAAAGGCACTACTCCGTCGTGAAGGCTAAAAAGGGAGGGGGA
TCGAGGCGAGAGGAACGCCACCGAACCCAAACCCCATCCAATCAAAAATTCGTACGGGAG
AGCTCTCGATTTGATCGCCGCGACCGCGAGGATGTACAAGTCGCGGCTGCAGGAGCTGTG
CCAGCAGCGGCGGTGGGCGCCGCCGGAGTACACCCACCGGTGCGCGGGCCCCGCCCACGC
CCCGCTCTTCGGCGCCACCGTCTCCGTCAACGGCGTGGAGTTCCGCACGCCGGAAGACGC
CGCGCGGTCGGCCAAGGAGGCGCACAACATCGCCGCCAAGGCCGCCTTCGACCACCTCTC
CTCCCTCCCGCTGCCGCCGCCTCCCCCTCCCTCCGAAAACCAATCTTCTTACAAAAGTCA
GTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGA
AGGTCCAGGTCATGCATCTCGGTTCAAGTCAGTAGTGACTGTAGATGGCAAAGCATTTGA
AAGTCCGGAATACTTTCACACAGTTAAGGAGGCTGAATCCGCTGCAGCAAAACTTGCTCT
TATGTCCTTACCTCAAGAAGCAAGCTCATCGGAGCAAGTGCCGGTCCAGCCATTGTCATA
CAAGAATCTTCTACAAGAATTAGCTCAGAAACATGGCTTTTCCTTGCCTGTCTACAGCAC
AACTTCAGATGGATCAGTGCAGGTACCTATGTTCAAATCAACTGTGGTATTTCAGGATGG
AAGTTTTCAGGGAGAACCAGCAAATACTAAGAAGCAAGCAGAGATGAATGCTGCTAGGGT
TGCTTTTCAACATTTTGAAGACAGAAGAAAAAATGCTCTTTCTTCCACTGTTCTAAGAGG
ACCGCATTTGGGACAAGGAACAGTGCACATATCTGCTGGACAAGTCAAGATTGCAGAACC
TGTTTTTTCAGTTCCCCTAGCATCAACAGCTACAAGCCACAGTGCAACTGGTGCTACAGA
TCGTGATTATCACTCCCTTGGCTCCACTAATCCCCTTCCAATTGCTAAGTCTACAAACTG
CGCTGATGTACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCC
AAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTA
CTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTT
AGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAG
TACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCC
ACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGT
TTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTAG
GAACGTTGCGGTAGACAAGAACTGGAGCCGGTGCTTTTGTGAAGTTGTAGCTTCTGCCAA
GTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAA
CCATGGTTATTAGCTTCGATGTTTAGACGGATGAACTCTTGTATCGTATCTACCTAATTA
GTTGCCCAACTATCTTAGCAGCAACGTGAATTGAACTTCTATTATAGTTCCCAACCTTAA
TTAACCGTGTTATATGTTTTTTTTATATAAAAAAAACAACTTAACTTTGTTGGACTAAAA
AAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 875
fasta sequence

                              [CAAGCCACAGTGCAACTGGTGCTACAGATCGTGATTATCACTCCCTTGGCTCCACTAATCCCCTTCCAATTGCTAAGTCTACAAACTGCGCTGATGTACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCCAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCACACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGCAGACAAGAACTGGAGCCGGTGCATTTGTGAAGTTGTAGCTTCTGNCAAGNTTAATTTACCTCANGCGTAGCGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAACCATGNTATTAGCTACGATGGTTAGACGGATGAACTCTTGGATCGGATCTACCTAANTAGNTGNCCAACTATCTTANCAGCACGNGAATGNACTTTATTATAGNTCCAAACTTAATNAACGGGTATATGGTTTTTTTATATAAAAAANAACTTAACTTTGTTGGACTATTGGGTGGTTGAGGNTTTCCCGCTTNCTTGCTGAANACANNATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAANGGC]

[+] EMBL CB096281             [CAAGCCACAGTGCAACTGGTGCTACAGATCGTGATTATCACTCCCTTGGCTCCACTAATCCCCTTCCAATTGCTAAGTCTACAAACTGCGCTGATGTACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCCAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCACACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGCAGACAAGAACTGGAGCCGGTGCATTTGTGAAGTTGTAGCTTCTGNCAAGNTTAATTTACCTCANGCGTAGCGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAACCATGNTATTAGCTACGATGGTTAGACGGATGAACTCTTGGATCGGATCTACCTAANTAGNTGNCCAACTATCTTANCAGCACGNGAATGNACTTTATTATAGNTCCAAACTTAATNAACGGGTATATGGTTTTTTTATATAAAAAANAACTTAACTTTGTTGGACTATTGGGTGGTTGAGGNTTTCCCGCTTNCTTGCTGAANACANNATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAANGGC]
[+] EMBL CB000742             [                                                                                                                                                                                                                                        TACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGTGCGACCGTTCTTCCTTTCAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTC                                                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_13010#1
CAAGCCACAGTGCAACTGGTGCTACAGATCGTGATTATCACTCCCTTGGCTCCACTAATC
CCCTTCCAATTGCTAAGTCTACAAACTGCGCTGATGTACATATCCAACCTTGTGAGTTCA
AAGATGAGAAACCGGCCTTTCCAGAGCCAAAGACCGTGCTTGAAGTAATGGACTCGTCTC
CGGAGCACACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCA
GTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGAT
GCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCT
TGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCG
CGACCGTTCTTCCTTTCAGTGACGATGTTTGGGTGGCAGTCAGCCTACCTACTCTCAACC
ATTAAGGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGCAGACAAGAACTGGAGCCGGT
GCATTTGTGAAGTTGTAGCTTCTGNCAAGNTTAATTTACCTCANGCGTAGCGCTAGCTGG
CAAACGGAACATGTCCATGCTGCAGGAACCATGNTATTAGCTACGATGGTTAGACGGATG
AACTCTTGGATCGGATCTACCTAANTAGNTGNCCAACTATCTTANCAGCACGNGAATGNA
CTTTATTATAGNTCCAAACTTAATNAACGGGTATATGGTTTTTTTATATAAAAAANAACT
TAACTTTGTTGGACTATTGGGTGGTTGAGGNTTTCCCGCTTNCTTGCTGAANACANNATT
TTTTTTAAAAAAAAAAAAAAAAAAAAAAAAANGGC

consensusID : consensus_13010#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CTGAAGGAGTAGAAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGTTTGGGTGGCAGTCANCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTANGAACGTTGCGGTAGACAAGAACTGGAGCCGGTGCTTTTGTGAAGTTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAACCATGGTTATTACTNTCGATGTTTAGACGGATGAACTCTTGTATCGTATCTACCTAATTAGGTGCCCAACTATCTTAGCAGCAACGTGAATTGAACTTCTATTATAGTTCCCAA]

[+] EMBL CF294665             [CTGAAGGAGTAGAAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGTTTGGGTGGCAGTCANCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTANGAACGTTGCGGTAGACAAGAACTGGAGCCGGTGCTTTTGTGAAGTTGTAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAACCATGGTTATTACTNTCGATGTTTAGACGGATGAACTCTTGTATCGTATCTACCTAATTAGGTGCCCAACTATCTTAGCAGCAACGTGAATTGAACTTCTATTATAGTTCCCAA]




>consensus_13010#2
CTGAAGGAGTAGAAAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGT
TGGAAGATGCCTACTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCG
GCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCT
TAGCCTCAGCCAGTACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAG
TCCAGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTT
TCAGTGACGATGTTTGGGTGGCAGTCANCCTACCTACTCTCAACCATTAAGGCAGAAGAA
AACTACGCCTTANGAACGTTGCGGTAGACAAGAACTGGAGCCGGTGCTTTTGTGAAGTTG
TAGCTTCTGCCAAGTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTC
CATGCTGCAGGAACCATGGTTATTACTNTCGATGTTTAGACGGATGAACTCTTGTATCGT
ATCTACCTAATTAGGTGCCCAACTATCTTAGCAGCAACGTGAATTGAACTTCTATTATAG
TTCCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13010#0      CCAGTGCAGGGGACCAAAGAAAGGCACTACTCCGTCGTGAAGGCTAAAAAGGGAGGGGGA 60
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      TCGAGGCGAGAGGAACGCCACCGAACCCAAACCCCATCCAATCAAAAATTCGTACGGGAG 120
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      AGCTCTCGATTTGATCGCCGCGACCGCGAGGATGTACAAGTCGCGGCTGCAGGAGCTGTG 180
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      CCAGCAGCGGCGGTGGGCGCCGCCGGAGTACACCCACCGGTGCGCGGGCCCCGCCCACGC 240
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      CCCGCTCTTCGGCGCCACCGTCTCCGTCAACGGCGTGGAGTTCCGCACGCCGGAAGACGC 300
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      CGCGCGGTCGGCCAAGGAGGCGCACAACATCGCCGCCAAGGCCGCCTTCGACCACCTCTC 360
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      CTCCCTCCCGCTGCCGCCGCCTCCCCCTCCCTCCGAAAACCAATCTTCTTACAAAAGTCA 420
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      GTTGCAAATTTATGCTCAGAAGAAGGGCAAACTGTTGCCTTCGTACCAAACAATTCGGGA 480
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      AGGTCCAGGTCATGCATCTCGGTTCAAGTCAGTAGTGACTGTAGATGGCAAAGCATTTGA 540
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      AAGTCCGGAATACTTTCACACAGTTAAGGAGGCTGAATCCGCTGCAGCAAAACTTGCTCT 600
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      TATGTCCTTACCTCAAGAAGCAAGCTCATCGGAGCAAGTGCCGGTCCAGCCATTGTCATA 660
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      CAAGAATCTTCTACAAGAATTAGCTCAGAAACATGGCTTTTCCTTGCCTGTCTACAGCAC 720
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      AACTTCAGATGGATCAGTGCAGGTACCTATGTTCAAATCAACTGTGGTATTTCAGGATGG 780
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      AAGTTTTCAGGGAGAACCAGCAAATACTAAGAAGCAAGCAGAGATGAATGCTGCTAGGGT 840
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      TGCTTTTCAACATTTTGAAGACAGAAGAAAAAATGCTCTTTCTTCCACTGTTCTAAGAGG 900
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      ACCGCATTTGGGACAAGGAACAGTGCACATATCTGCTGGACAAGTCAAGATTGCAGAACC 960
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      ------------------------------------------------------------
                                                                                   

consensus_13010#0      TGTTTTTTCAGTTCCCCTAGCATCAACAGCTACAAGCCACAGTGCAACTGGTGCTACAGA 1020
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      --------------------------------CAAGCCACAGTGCAACTGGTGCTACAGA 28
                                                                                   

consensus_13010#0      TCGTGATTATCACTCCCTTGGCTCCACTAATCCCCTTCCAATTGCTAAGTCTACAAACTG 1080
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      TCGTGATTATCACTCCCTTGGCTCCACTAATCCCCTTCCAATTGCTAAGTCTACAAACTG 88
                                                                                   

consensus_13010#0      CGCTGATGTACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCC 1140
consensus_13010#2      -----------------------------------------------CTGAAGGAGTAGA 13
consensus_13010#1      CGCTGATGTACATATCCAACCTTGTGAGTTCAAAGATGAGAAACCGGCCTTTCCAGAGCC 148
                                                                      *      **    

consensus_13010#0      AAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTA 1200
consensus_13010#2      AAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCTCACACCGTTGGAAGATGCCTA 73
consensus_13010#1      AAAGACCGTGCTTGAAGTAATGGACTCGTCTCCGGAGCACACACCGTTGGAAGATGCCTA 208
                       ************************************** *********************

consensus_13010#0      CTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTT 1260
consensus_13010#2      CTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTT 133
consensus_13010#1      CTCAGCCCCTGTAGCCTCAACCAGTACTGTCAGTTCTAGTGGATGCGGCTCTGACCCCTT 268
                       ************************************************************

consensus_13010#0      AGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAG 1320
consensus_13010#2      AGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAG 193
consensus_13010#1      AGCCTCAGCCAGTACTGTCAATTCTACTGGATGCGGCTCTGTCCCCTTAGCCTCAGCCAG 328
                       ************************************************************

consensus_13010#0      TACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCC 1380
consensus_13010#2      TACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCC 253
consensus_13010#1      TACTGTCAGTTCTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCCAGGTCTATCC 388
                       ************************************************************

consensus_13010#0      ACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGT 1440
consensus_13010#2      ACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGT 313
consensus_13010#1      ACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGT 448
                       ************************************************************

consensus_13010#0      TTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTAG 1500
consensus_13010#2      TTGGGTGGCAGTCANCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTAN 373
consensus_13010#1      TTGGGTGGCAGTCAGCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTAG 508
                       ************** ******************************************** 

consensus_13010#0      GAACGTTGCGGTAGACAAGAACTGGAGCCGGTGCTTTTGTGAAGTTGTAGCTTCTGCCAA 1560
consensus_13010#2      GAACGTTGCGGTAGACAAGAACTGGAGCCGGTGCTTTTGTGAAGTTGTAGCTTCTGCCAA 433
consensus_13010#1      GAACGTTGCGGCAGACAAGAACTGGAGCCGGTGCATTTGTGAAGTTGTAGCTTCTGNCAA 568
                       *********** ********************** ********************* ***

consensus_13010#0      GTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAA 1620
consensus_13010#2      GTTTAATTTACCTCAGGCGTAGTGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAA 493
consensus_13010#1      GNTTAATTTACCTCANGCGTAGCGCTAGCTGGCAAACGGAACATGTCCATGCTGCAGGAA 628
                       * ************* ****** *************************************

consensus_13010#0      CCATGGTTATTAGCTTCGATGTTTAGACGGATGAACTCTTGTATCGTATCTACCTAATTA 1680
consensus_13010#2      CCATGGTTATTACTNTCGATGTTTAGACGGATGAACTCTTGTATCGTATCTACCTAATTA 553
consensus_13010#1      CCATGNT-ATTAGCTACGATGGTTAGACGGATGAACTCTTGGATCGGATCTACCTAANTA 687
                       ***** * ****    ***** ******************* **** ********** **

consensus_13010#0      GTTGCCCAACTATCTTAGCAGCAACGTGAATTGAACTTCTATTATAGTTCCCAACCTTAA 1740
consensus_13010#2      GGTGCCCAACTATCTTAGCAGCAACGTGAATTGAACTTCTATTATAGTTCCCAA------ 607
consensus_13010#1      GNTGNCCAACTATCTTANCAGCA-CGNGAAT-GNACTT-TATTATAGNTCC-AAACTTAA 743
                       * ** ************ ***** ** **** * **** ******** *** **      

consensus_13010#0      TTAACCGTGTTATATGTTTTTTTTATATAAAAAAAACAACTTAACTTTGTTGGACTAAAA 1800
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      TNAACGG--GTATATGGTTTTTTTATATAAAAAANA--ACTTAACTTTGTTGGACTATTG 799
                                                                                   

consensus_13010#0      AAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 1823
consensus_13010#2      ------------------------------------------------------------
consensus_13010#1      GGTGGTTGAGGNTTTCCCGCTTNCTTGCTGAANACANNATTTTTTTTAAAAAAAAAAAAA 859
                                                                                   

consensus_13010#0      ----------------
consensus_13010#2      ----------------
consensus_13010#1      AAAAAAAAAAAANGGC 875