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Oryza sativa
cluster # 13013 cluster # 13013       Sequences # 12       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13013#0 length = 1376 sequences # 5  
consensus_13013#1 length = 676 sequences # 3  
consensus_13013#2 length = 612 sequences # 1  
consensus_13013#3 length = 558 sequences # 1  
consensus_13013#4 length = 500 sequences # 1  
consensus_13013#5 length = 151 sequences # 1  

consensusID : consensus_13013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1376
fasta sequence
                              [CTTGTTTGATTTTAGACGAACTGAGAACTCTTCCTTGTTGCTGGTGATTGACAGAAGGGATGATCCTGTTACCCCGTTACTTAACCAATGGACATATCAGGCAATGGTTCATGAACTTATTGGAATTGAGAACAATAAAGTTGATCTAAGGGAATATCCTAATGTCCCTAAAGACCAGAAGGAGGTGGTTCTATCATCAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAATTTTGGTGATCTTGGTATGAATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAAGACCAGCCAGAATATTCAGAGCATAAGTGATATGTCAAAATTTCTGAGCAACTACCCTGAATATCGGAAGACTCATGGAAATGTAACGAAGCATGTTGCTTTGGTCAGTGAGATGAGCAGAATTGTGGAGGAAAGGAAGATTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCATGTACAAGTGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGGAGAGTCCGGTTCAGTTGATGCAGCTTTTCAAT-AATTGGCTTCTCGTTCTGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGCCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCAACACACCATACGGAATAAAATTGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGTTCAACGTCCTGGGAGAATCAACATTCAAGTCGCGCATTTTGTTGATATTTTGTCAAAAA]

[+] EMBL AK066001             [CTTGTTTGATTTTAGACGAACTGAGAACTCTTCCTTGTTGCTGGTGATTGACAGAAGGGATGATCCTGTTACCCCGTTACTTAACCAATGGACATATCAGGCAATGGTTCATGAACTTATTGGAATTGAGAACAATAAAGTTGATCTAAGGGAATATCCTAATGTCCCTAAAGACCAGAAGGAGGTGGTTCTATCATCAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAATTTTGGTGATCTTGGTATGAATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAAGACCAGCCAGAATATTCAGAGCATAAGTGATATGTCAAAATTTCTGAGCAACTACCCTGAATATCGGAAGACTCATGGAAATGTAACGAAGCATGTTGCTTTGGTCAGTGAGATGAGCAGAATTGTGGAGGAAAGGAAGATTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCATGTACAAGTGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAGGGAGAGTCCGGTTCAGTTGATGCAGCTTTTCAATAAATTGGCTTCTCGTTCTGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGCCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCGTAGAGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCAACACACCATACGGAATAAAATTGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGTTCAACGTCCTGGGAGAATCAACATTCAAGTCGCGCATTTTGTTGATATTTTGTC     ]
[+] EMBL OSS1917A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGACGGAGCAAGAGTTAGCATGTACAAGTGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGGAGAGTCCGGTTCAGTTGATGCAGCTTTTCAAT AATTGGCTTCTCGTTCTGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGCCTCTTCTCTTTCAGACCATGGAGGGAATT TTAAGGCACGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSS1918A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGACGGAGCAAGAGTTAGCATGTACAAGTGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGGAGAGTCCGGTTCAGTTGATGCAGCTTTTCAAT AATTGGCTTCTCGTTCTGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGCCTCTTCTCTTTCAGACCATGG AGGGATTGT AAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU101187             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACNCCCAACATCAGCCTCTTCTCTTTCAGNCCATGGAAGGAATTGTAAAGGCACGATTNCGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAA TTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCAACACACCATACGGAATAAAATTGTTCACAGTTCACCTAAAAA                                                                                                                                      ]
[-] EMBL CF309935             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCAACACACCATACGGAATAAAATTGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGTTCAATGTCCTGGGAGAATCAACATTCAAGTCGCGCATTTTGTTGATATTTTGTCAAAAA]


>consensus_13013#0 CTTGTTTGATTTTAGACGAACTGAGAACTCTTCCTTGTTGCTGGTGATTGACAGAAGGGA TGATCCTGTTACCCCGTTACTTAACCAATGGACATATCAGGCAATGGTTCATGAACTTAT TGGAATTGAGAACAATAAAGTTGATCTAAGGGAATATCCTAATGTCCCTAAAGACCAGAA GGAGGTGGTTCTATCATCAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAATTT TGGTGATCTTGGTATGAATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAAGAC CAGCCAGAATATTCAGAGCATAAGTGATATGTCAAAATTTCTGAGCAACTACCCTGAATA TCGGAAGACTCATGGAAATGTAACGAAGCATGTTGCTTTGGTCAGTGAGATGAGCAGAAT TGTGGAGGAAAGGAAGATTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCATGTACAAG TGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTCTGA TATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGGAGAGTCCGGT TCAGTTGATGCAGCTTTTCAATAATTGGCTTCTCGTTCTGCTAAATACAAGTCAGGGCTG GTTCAATTCCTCCTCAAACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAAC CGTGATCTATTAAATATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTA TACACCCAACATCAGCCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTA CGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTT GTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAAT GCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGA TTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCA GGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTT TGCATAGAGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCA ACACACCATACGGAATAAAATTGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTG CAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGTTCA ACGTCCTGGGAGAATCAACATTCAAGTCGCGCATTTTGTTGATATTTTGTCAAAAA



consensusID : consensus_13013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 676
fasta sequence
                              [TGACTGGACTGAAGGAGTAGAAATGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGCCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAA-TTCGTGGTAAATTTTGTNATGCACAGCTTTAGATTCATNGTGCAACACACCATACGGAATAAAATTGTTCACNGTTCACCTAAAAACACATTTTTTGTGGTTTGCNATTATTGCTGCAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF309934             [TGACTGGACTGAAGGAGTAGAAATGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGCCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTANGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAAT                                                                                                                                                                          ]
[+] EMBL AU161637             [                                                                                                                                                                                                                                                                      AGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGNGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCNGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAA TTCGTGGTAAATTTTGTNATGCACAGCTTTAGATTCATNGTGCAACACACCATACGGAATAAAATTGTTCACNGTTCACCTAAAAACACATTTTTTGTGGTTTGCNATTATTGCTGCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU222922             [                                                                                                                                                                                                                                                                                                                                                                                                                                  TAGGAGAGGCNCAGAGAATATCGAAATCGAGCAGTTTAGTATGAGCAGGCTNTTAGCTTTTACAGCTTGAAACTTGGCAGTNTGACAATTGAAACTTGTGGTGTTTTTGCATANAGAATCAACTTCGTGGTAAATTTTGTAATGCNCAGCTTTAGATTCATAGTGCAACACNCCATACGGAATAAAATTGTTCNCAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTGCTGCNAAAAAAAAAAAAAAAAAA]


>consensus_13013#1 TGACTGGACTGAAGGAGTAGAAATGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTC AAACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAAT ATTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAG CCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTAT CCGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTT GGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGA GTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTA GGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTA CAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAA TTCGTGGTAAATTTTGTNATGCACAGCTTTAGATTCATNGTGCAACACACCATACGGAAT AAAATTGTTCACNGTTCACCTAAAAACACATTTTTTGTGGTTTGCNATTATTGCTGCAAA AAAAAAAAAAAAAAAA



consensusID : consensus_13013#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [AATTCGGCACGAGCTATCATCAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAATTTTGGTGATCTTGGTATGAATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAAGACCAGCCAGAATATTCAGAGCATAAGTGATATGTCAAAATTTCTGAGCAACTACCCTGAATATCGGAAGACTCATGGAAATGTAACGAAGCATGTTGCTTTGGTCAGTGAGATGAGCAGAATTGTGGAGGAAAGGAAGATTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCATGTACAAGTGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGGAGAGTCCGGTTCAGTTGATGCAGCTTTTCAATAAATTGGCTTCTCGTTCTGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCANACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGGACCGTGATCTATTANATATTGCTCGCAACATGGCTCGTGGGACTCAGGGCGTTGAGAATGTATACCCCAA]

[+] EMBL CA756372             [AATTCGGCACGAGCTATCATCAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAATTTTGGTGATCTTGGTATGAATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAAGACCAGCCAGAATATTCAGAGCATAAGTGATATGTCAAAATTTCTGAGCAACTACCCTGAATATCGGAAGACTCATGGAAATGTAACGAAGCATGTTGCTTTGGTCAGTGAGATGAGCAGAATTGTGGAGGAAAGGAAGATTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCATGTACAAGTGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGGAGAGTCCGGTTCAGTTGATGCAGCTTTTCAATAAATTGGCTTCTCGTTCTGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCANACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGGACCGTGATCTATTANATATTGCTCGCAACATGGCTCGTGGGACTCAGGGCGTTGAGAATGTATACCCCAA]


>consensus_13013#2 AATTCGGCACGAGCTATCATCAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAA TTTTGGTGATCTTGGTATGAATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAA GACCAGCCAGAATATTCAGAGCATAAGTGATATGTCAAAATTTCTGAGCAACTACCCTGA ATATCGGAAGACTCATGGAAATGTAACGAAGCATGTTGCTTTGGTCAGTGAGATGAGCAG AATTGTGGAGGAAAGGAAGATTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCATGTAC AAGTGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTC TGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGGAGAGTCC GGTTCAGTTGATGCAGCTTTTCAATAAATTGGCTTCTCGTTCTGCTAAATACAAGTCAGG GCTGGTTCAATTCCTCCTCANACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGG GGACCGTGATCTATTANATATTGCTCGCAACATGGCTCGTGGGACTCAGGGCGTTGAGAA TGTATACCCCAA



consensusID : consensus_13013#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence
                              [TGTGTTGCTTTTCAAGACCCATTGGGAAAGGGTAGTTGGTAAAAGGCACCGAGTACGAGATGCGGATGATCCGCTTGGTGGCAATCAGTGTTGCCAGCAGTACAGGCCTCAGATGTTGTGCTGTGTCATGTTTTGGAGGGACGACGTGTACGAGGAAGCAAGATCAGNAGCCCTGTACAAGGCAGCAAATCCTGGAGTGTCGGTTGCTGTTGCTTGGGTGGGTTCAGTGGTGTGCTGAAATTGCANAAAGAGATGTTCTTGGATGGACTTAGGAGAGGCACAGAGAATATGAAATGCGACCACGTGCTAGTATGGACACGGCTCNTAGCTTGTGCTACACGCTTGAAACTTGGCACGTGCTGACCATGTGAAACTTGGTGGTGTTTTCCCCCTGAGAGAATCAACTTGCGTGGGTAAATGGTTGGGAATGCACAGCTTTAGATTCATAGTCACACACCATACGGAATAAATTGTTCACAGTTCACCTAAAACACATTTTTTGTGTTTCCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAAAAAA]

[+] EMBL BM037801             [TGTGTTGCTTTTCAAGACCCATTGGGAAAGGGTAGTTGGTAAAAGGCACCGAGTACGAGATGCGGATGATCCGCTTGGTGGCAATCAGTGTTGCCAGCAGTACAGGCCTCAGATGTTGTGCTGTGTCATGTTTTGGAGGGACGACGTGTACGAGGAAGCAAGATCAGNAGCCCTGTACAAGGCAGCAAATCCTGGAGTGTCGGTTGCTGTTGCTTGGGTGGGTTCAGTGGTGTGCTGAAATTGCANAAAGAGATGTTCTTGGATGGACTTAGGAGAGGCACAGAGAATATGAAATGCGACCACGTGCTAGTATGGACACGGCTCNTAGCTTGTGCTACACGCTTGAAACTTGGCACGTGCTGACCATGTGAAACTTGGTGGTGTTTTCCCCCTGAGAGAATCAACTTGCGTGGGTAAATGGTTGGGAATGCACAGCTTTAGATTCATAGTCACACACCATACGGAATAAATTGTTCACAGTTCACCTAAAACACATTTTTTGTGTTTCCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAAAAAA]


>consensus_13013#3 TGTGTTGCTTTTCAAGACCCATTGGGAAAGGGTAGTTGGTAAAAGGCACCGAGTACGAGA TGCGGATGATCCGCTTGGTGGCAATCAGTGTTGCCAGCAGTACAGGCCTCAGATGTTGTG CTGTGTCATGTTTTGGAGGGACGACGTGTACGAGGAAGCAAGATCAGNAGCCCTGTACAA GGCAGCAAATCCTGGAGTGTCGGTTGCTGTTGCTTGGGTGGGTTCAGTGGTGTGCTGAAA TTGCANAAAGAGATGTTCTTGGATGGACTTAGGAGAGGCACAGAGAATATGAAATGCGAC CACGTGCTAGTATGGACACGGCTCNTAGCTTGTGCTACACGCTTGAAACTTGGCACGTGC TGACCATGTGAAACTTGGTGGTGTTTTCCCCCTGAGAGAATCAACTTGCGTGGGTAAATG GTTGGGAATGCACAGCTTTAGATTCATAGTCACACACCATACGGAATAAATTGTTCACAG TTCACCTAAAACACATTTTTTGTGTTTCCAATTATTGCTGCATATAGGGCGCTCCGGGTG AAATTAATATTTAAAAAA



consensusID : consensus_13013#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence
                              [CAGCCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGCATGGTTTACTTCTAAATGTGGAGTAATTTTTAGGAGTACTGGCTGATTGATACTCTCCTCACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCAACACACCATACGGAATAAAATTGTTCA]

[+] EMBL CB678798             [CAGCCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGCATGGTTTACTTCTAAATGTGGAGTAATTTTTAGGAGTACTGGCTGATTGATACTCTCCTCACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCAACACACCATACGGAATAAAATTGTTCA]


>consensus_13013#4 CAGCCTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGAT TATCCGCTTGTTGGCAATCATTTCCAGCAGAACAGCATGGTTTACTTCTAAATGTGGAGT AATTTTTAGGAGTACTGGCTGATTGATACTCTCCTCACAGGCCTCAAGATGTTGTGCTGT TCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAA ATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTG ATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTT AGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAG AGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCAACACACC ATACGGAATAAAATTGTTCA



consensusID : consensus_13013#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 151
fasta sequence
                              [CATGGACTGAGGAGTAGAAAGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF307660             [CATGGACTGAGGAGTAGAAAGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13013#5 CATGGACTGAGGAGTAGAAAGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCA ATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGTTCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13013#0      CTTGTTTGATTTTAGACGAACTGAGAACTCTTCCTTGTTGCTGGTGATTGACAGAAGGGA 60
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      TGATCCTGTTACCCCGTTACTTAACCAATGGACATATCAGGCAATGGTTCATGAACTTAT 120
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ----------------------------------------------TGACTGGACTGAAG 14
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      TGGAATTGAGAACAATAAAGTTGATCTAAGGGAATATCCTAATGTCCCTAAAGACCAGAA 180
consensus_13013#2      ---------------------------------------------------AATTCGGCA 9
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      GAGTAGAAATGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGT 74
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      GGAGGTGGTTCTATCATCAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAATTT 240
consensus_13013#2      CGAG------CTATCATCAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAATTT 63
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      TGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATATTGCTCGCAACAT 134
consensus_13013#4      ----------------------------CAGCCTCTTCTCTTTCAGACCATGGAAGGAAT 32
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      TGGTGATCTTGGTATGAATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAAGAC 300
consensus_13013#2      TGGTGATCTTGGTATGAATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAAGAC 123
consensus_13013#5      ----------------------------------------------CATGGACTGAGGAG 14
consensus_13013#1      GGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGCCTCT-TCTCTTTC 193
consensus_13013#4      TGTAAAGGCACGATTACGAGATGCTGAT-TATCCGCTTGTTGGCAATCATT-TCCAGCAG 90
consensus_13013#3      -----------------------------------TGTGTTGCTTTTCAAGACCCATTGG 25
                                                                                   

consensus_13013#0      CAGCCAGAATATTCAGAGCATAAGTGATATGTCAAAATTTCTGA---GCAACTACC--CT 355
consensus_13013#2      CAGCCAGAATATTCAGAGCATAAGTGATATGTCAAAATTTCTGA---GCAACTACC--CT 178
consensus_13013#5      TA----GAAAGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTG-CT 69
consensus_13013#1      AG--ACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGA--TTATCCGCTTGTT 249
consensus_13013#4      AAC-AGCATGGTTT-ACTTCTAAATGTGGAGTAATTTTTAG--GA--GTACTGGCTGATT 144
consensus_13013#3      GAA-AGGGTAGTTG--GTAAAAGGCACCGAGT-ACGAGATGCGGA--TGATCCGCTTGGT 79
                                            *           *               *         *

consensus_13013#0      GAATATCGGAAGACTCATGGAAATGTAACGAAGCATGTTGCTTTGG-TCAG--TGAGATG 412
consensus_13013#2      GAATATCGGAAGACTCATGGAAATGTAACGAAGCATGTTGCTTTGG-TCAG--TGAGATG 235
consensus_13013#5      GCATATAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGT-TCAA--AAAAAAA 126
consensus_13013#1      GGCAATCA---TTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGT-TCAT-TGTTGGAG 304
consensus_13013#4      GATACTCT---CCTC-------ACAGGCCTCAAGATGTTGTGCTGT-TCAT-TGTTGGAG 192
consensus_13013#3      GGCAATCAGTGTTGCCAGCAGTACAGGCCTCA-GATGTTGTGCTGTGTCATGTTTTGGAG 138
                       *    *                *           * *  *    *  ***          

consensus_13013#0      AGCAGAATTGTGGAGGAAAGGAAGATTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCA 472
consensus_13013#2      AGCAGAATTGTGGAGGAAAGGAAGATTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCA 295
consensus_13013#5      AAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------- 151
consensus_13013#1      GGACGACTT--ACGAGGAAGCAAGATCA-GTAGCCCTTTACAATGCAGCAAATCCTGGAG 361
consensus_13013#4      GGACGACTT--ACGAGGAAGCAAGATCA-GTAGCCCTTTACAATGCAGCAAATCCTGGAG 249
consensus_13013#3      GGACGACGTGTACGAGGAAGCAAGATCA-GNAGCCCTGTACAAGGCAGCAAATCCTGGAG 197
                            *           **  ** *                                   

consensus_13013#0      TGTACAAGTGGACAAGCAGCT--GCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAA 530
consensus_13013#2      TGTACAAGTGGACAAGCAGCT--GCTTTCGAGGCTGTCACTTCCTTGCTAAACAATGAAA 353
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      T-TCGGTTC---TTTCTTGGT--GGTTCAGTGGT---TCTAAATT---CAAAGAGAT-TT 408
consensus_13013#4      T-TCGGTTC---TTTCTTGGT--GGTTCAGTGGT---TCTAAATT---CAAAGAGAT-TT 296
consensus_13013#3      TGTCGGTTGCTGTTGCTTGGGTGGGTTCAGTGGTGTGCTGAAATTGCANAAAGAGATGTT 257
                                                                                   

consensus_13013#0      GTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGG 590
consensus_13013#2      GTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCTTTGAGGTATGAAAAGG 413
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      CTTGAT--GACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCA-GT-CTAGTATGAGC 464
consensus_13013#4      CTTGAT--GACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCA-GT-CTAGTATGAGC 352
consensus_13013#3      CTTGGATGGACTTAGGAGAGGCACAGAGAATATGAAATGCGACCACGTGCTAGTATGGAC 317
                                                                                   

consensus_13013#0      AGAGTCCGGTTCAGTTGATGCAGCTTTTCAATAA-TTGGCTTCTCGTTCTGCTAAATACA 649
consensus_13013#2      AGAGTCCGGTTCAGTTGATGCAGCTTTTCAATAAATTGGCTTCTCGTTCTGCTAAATACA 473
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      A-GGCTC---TTAGCTT---CTACA-GCTTGAAACTTGGCA----GT-CTGACAAT-TGA 510
consensus_13013#4      A-GGCTC---TTAGCTT---CTACA-GCTTGAAACTTGGCA----GT-CTGACAAT-TGA 398
consensus_13013#3      ACGGCTC---NTAGCTTGTGCTACACGCTTGAAACTTGGCAC---GTGCTGACCATGTGA 371
                                                                                   

consensus_13013#0      AGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGTTGATAAGA--GAACAGGTGA 707
consensus_13013#2      AGTCAGGGCTGGTTCAATTCCTCCTCANACAGGCTGGTGTTGATAAGA--GAACAGGTGA 531
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      AACTTG-TGGTGTTTTTGCAT--AGAGAATCAA-TT-CGTGG-TAAAT--TTTGTNATGC 562
consensus_13013#4      AACTTG-TGGTGTTTTTGCAT--AGAGAATCAACTT-CGTGG-TAAAT--TTTGTAATGC 451
consensus_13013#3      AACTTGGTGGTGTTTTCCCCCTGAGAGAATCAACTTGCGTGGGTAAATGGTTGGGAATGC 431
                                                                                   

consensus_13013#0      CTTATATGGGAACCGTGATCTATTAAATATTGCTCG-CAACATGGCTCGTGGACTCAAGG 766
consensus_13013#2      CTTATATGGGGACCGTGATCTATTANATATTGCTCG-CAACATGGCTCGTGGGACTCAGG 590
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ACAGCTTTAGATTCATNGTGCAACACACCATACGGAATAAAATTGTTCACNGTTCACCTA 622
consensus_13013#4      ACAGCTTTAGATTCATAGTGCAACACACCATACGGAATAAAATTGTTCA----------- 500
consensus_13013#3      ACAGCTTTAGATTCATAGTC--ACACACCATACGGAATAAA-TTGTTCACAGTTCACCTA 488
                                                                                   

consensus_13013#0      GCGTTGAGAATGTATACACCCAACATCAGCCTCTTCTCTTTCAGACCATGGAAGGAATTG 826
consensus_13013#2      GCGTTGAGAATGTATAC-CCCAA------------------------------------- 612
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      AAA-ACACATTTTTTGTGGTTTGCNATTATTGCTGCAAAAAAAAAAAAAAAAAAA----- 676
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      AAACACATTTTTTGTGTTTCCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAAT 548
                                                                                   

consensus_13013#0      TAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCATTTCCAGCAGAACA 886
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ATTTAAAAAA-------------------------------------------------- 558
                                                                                   

consensus_13013#0      GGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAGGAAGCAAGATCAG 946
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      TAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGTGGTTCAGTGGTTC 1006
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      TAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATATCGAAATCGAGCA 1066
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      GTCTAGTATGAGCAGGCTCTTAGCTTCTACAGCTTGAAACTTGGCAGTCTGACAATTGAA 1126
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      ACTTGTGGTGTTTTTGCATAGAGAATCAACTTCGTGGTAAATTTTGTAATGCACAGCTTT 1186
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      AGATTCATAGTGCAACACACCATACGGAATAAAATTGTTCACAGTTCACCTAAAAACACA 1246
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      TTTTTTGTGGTTTGCAATTATTGCTGCATATAGGGCGCTCCGGGTGAAATTAATATTTAA 1306
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      CGCAGTTTAGTTCAACGTCCTGGGAGAATCAACATTCAAGTCGCGCATTTTGTTGATATT 1366
consensus_13013#2      ------------------------------------------------------------
consensus_13013#5      ------------------------------------------------------------
consensus_13013#1      ------------------------------------------------------------
consensus_13013#4      ------------------------------------------------------------
consensus_13013#3      ------------------------------------------------------------
                                                                                   

consensus_13013#0      TTGTCAAAAA 1376
consensus_13013#2      ----------
consensus_13013#5      ----------
consensus_13013#1      ----------
consensus_13013#4      ----------
consensus_13013#3      ----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)