cluster # 13016

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Oryza sativa
cluster # 13016 cluster # 13016 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13016#0 length = 1606 sequences # 3
consensus_13016#1 length = 1337 sequences # 6

consensus_13016#2 length = 550 sequences # 2
consensus_13016#3 length = 397 sequences # 1

consensusID : consensus_13016#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1606
fasta sequence

                              [TCCTCTCGCCTCCAAATCCTCTCTTCCTCTTCACACACAGGCGTTGCCGCAGAGACAGCGAGCGAGCGAGAGAGCGCGAGGCGGAGGTGAGTGACGACCATGCAGGCGGTGGTGGCGAACGGCGGCGGCGGGGACGTGGTGCAGAAGCCGCAGCAGGTGGTGGCGGCGCCGCCGCCGCCCCAGGCGGCGCTGCCGCCGCCGCCTCATTGGGTGGCCATGCCGTTCGCGCCCCCGGGGGCGGCGGCCATGGTAATGCAGCACCAGATGGCGCCGGCGCCGCCCCAGTTCGCCCCGCACTTCGTGCCGTTCCACGCGGCGGCGGGCAGGAGGGGAACAAGACCATCTGGGTCGGCGACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTGATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGATGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTAGTGAAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCCCAGTTGGGAAACAGTGCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCATTGCAAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCAATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACTACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTTATTGAAGTAGAACAATAAACTATTCAAATACCTACTAAAAAGCGGC]

[+] EMBL AK067260             [TCCTCTCGCCTCCAAATCCTCTCTTCCTCTTCACACACAGGCGTTGCCGCAGAGACAGCGAGCGAGCGAGAGAGCGCGAGGCGGAGGTGAGTGACGACCATGCAGGCGGTGGTGGCGAACGGCGGCGGCGGGGACGTGGTGCAGAAGCCGCAGCAGGTGGTGGCGGCGCCGCCGCCGCCCCAGGCGGCGCTGCCGCCGCCGCCTCATTGGGTGGCCATGCCGTTCGCGCCCCCGGGGGCGGCGGCCATGGTAATGCAGCACCAGATGGCGCCGGCGCCGCCCCAGTTCGCCCCGCACTTCGTGCCGTTCCACGCGGCGGCGGGCAGGAGGGGAACAAGACCATCTGGGTCGGCGACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTGATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGATGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTAGTGAAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCCCAGTTGGGAAACAGTGCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCATTGCAAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCAATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACTACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTTATTGAAGTAGAACAATAAACTATTCAAATACCTACT          ]
[+] EMBL AU166698             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTGNCAATGGCAGTCAGTGGAACAACGGGATGTACTACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTTATTGAAGTAGAACAATAAACTATTCAAATACCTAAAAAAAA     ]
[-] EMBL AU225449             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccGCTCCACTAAGCCGCCCTATTGACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTTATTGAAGTAGAACAATAAACTATTCAAATACCTACTGTGCAGCGGC]




>consensus_13016#0
TCCTCTCGCCTCCAAATCCTCTCTTCCTCTTCACACACAGGCGTTGCCGCAGAGACAGCG
AGCGAGCGAGAGAGCGCGAGGCGGAGGTGAGTGACGACCATGCAGGCGGTGGTGGCGAAC
GGCGGCGGCGGGGACGTGGTGCAGAAGCCGCAGCAGGTGGTGGCGGCGCCGCCGCCGCCC
CAGGCGGCGCTGCCGCCGCCGCCTCATTGGGTGGCCATGCCGTTCGCGCCCCCGGGGGCG
GCGGCCATGGTAATGCAGCACCAGATGGCGCCGGCGCCGCCCCAGTTCGCCCCGCACTTC
GTGCCGTTCCACGCGGCGGCGGGCAGGAGGGGAACAAGACCATCTGGGTCGGCGACCTCC
ACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAG
CAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGT
TCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAA
ACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAG
ATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCA
CATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTG
ATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGAGA
AGACACATGCCATGACTGAGATGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTG
GCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGAT
CAGATGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTAGTG
AAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCCCAG
TTGGGAAACAGTGCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCATTGC
AAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCAATC
CAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACTACG
CAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCA
TGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAG
AGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTT
GCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCAC
TGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGAC
TGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTT
ATTGAAGTAGAACAATAAACTATTCAAATACCTACTAAAAAGCGGC

consensusID : consensus_13016#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1337
fasta sequence

                              [AAAGCCGCCGCCCGTGGCCGTGGCGATGGGCTCCCCGGCGCCGCACGCGCAGGGCGGCGGCGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCGACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTGATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGAT-GAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTAGTGAAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCCCAGTTGGGAAACAGTGCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCATTGCAAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCAATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACTACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTTATTGAAGTAGAACAATAAACTATTCAAATACCT]

[+] EMBL AK060597             [AAAGCCGCCGCCCGTGGCCGTGGCGATGGGCTCCCCGGCGCCGCACGCGCAGGGCGGCGGCGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCGACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTGATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGAT GAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTAGTGAAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCCCAGTTGGGAAACAGTGCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCATTGCAAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCAATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACTACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTTATTGAAGTAGAACAATAAACTATTCAAATACCT]
[+] EMBL CF306264             [                                                                                        TGGGTCGGCGACCTCCACTACTGGATGGAC AGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTGATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGATNGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU166699             [                                                                                               GCGACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTGATGCTAATACTGGTAGATCAAAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF306223             [                                                                                                                                                                                                                                         agGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTGATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGAT GAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTAGTGAAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCCCAGTTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB645958             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTAGTGAAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCCCAGTTGGGAAACAGTGCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCATTGCAAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCAATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACTACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACATGGTTGAAGTAGAACAA                  ]
[+] EMBL BE230641             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGCAAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCAATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTTCTACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCG CCTATTGACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTTATTGAAGTAGAACAATAAAC             ]




>consensus_13016#1
AAAGCCGCCGCCCGTGGCCGTGGCGATGGGCTCCCCGGCGCCGCACGCGCAGGGCGGCGG
CGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCGACCTCCACTACTGGATGGACGA
GAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCG
TAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGC
TGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTT
TAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCA
TTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTT
CTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTATTGATGCTAATACTGGTAG
ATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGAGAAGACACATGCCATGAC
TGAGATGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAG
AAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATTTGAC
AAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTAGTGAAGATGACCTTAGGCA
AACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCCCAGTTGGGAAACAGTGCGG
CTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCATTGCAAGGACTGAACGGAAG
CACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCAATCCAGCAAACAAGCAGTT
GAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACTACGCAGCCTCGCCGTTTTA
CAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTGCTTA
TGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTC
ACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAG
AACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGTCACTGGTTATGTAAAGTAC
ATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGACTGGCCATGGTCTGCTG
AACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCACCTTATTGAAGTAGAACAAT
AAACTATTCAAATACCT

consensusID : consensus_13016#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 550
fasta sequence

                              [CACTTCGTGCCGTTCCACGCGGCGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCGACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGATNGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATTTGACAA]

[+] EMBL CF322437             [CACTTCGTGCCGTTCCACGCGGCGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCGACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGATNGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGAGATTTGACAA]
[+] EMBL CF324265             [CACTTCGTGCCGTTCCACGCGGCGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCGACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATACCACATTACTAGAGACTTTCTCCAAAAGATTTGGAGATGATAACGAGAAGACACATGCCATGACTGAGAT GAATGGTGTGT                                                                                                         ]




>consensus_13016#2
CACTTCGTGCCGTTCCACGCGGCGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCG
ACCTCCACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGG
TTGTAGCAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTG
TAGAGTTCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAA
TGCCAAACACTGACCAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGAC
GTTCAGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATG
ATACCACATTACTAGAGACTTTCTCCAAAAGATTTGGAGATGATAACGAGAAGACACATG
CCATGACTGAGATNGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAATTGGCCCTGCA
ACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTCGATCAGATGGA
GATTTGACAA

consensusID : consensus_13016#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [NGATTCGGCCGAGCTCGTGCCGAATTCGGCACGAGCAAATCCTCTCTTCCTCTTCACACACAGGCGTTGCCGCNGANACAGCGAGCGAGCGANAAANCGCGANGCGGAAGTGAGTGACACCNTGCNCGCGGTGGTGGCCAACNGCGGCCGCCGGGNNTTTNTNCNCANCCCACAGGTGGTGGCGCGCCCCGCCGCCCCAGGCGGCGCTGCCGCCGCCGCCTCATTGGGTGGCCATGCCCTTCCCCCCCCCGGGGGCGGCGGCCTTGGTTTTNCACNCCAAATGGCCCNGNGCCNCCCCATTTCCCCCCCCACTTCTTCCGTTCCACCCGGTCGGCCCGCCNCCCCCCCNNNNCCCNGGGGGGGNCCCCCCCCCTTGCCCTGGNAATGGGTCCCCCGG]

[+] EMBL BE229762             [NGATTCGGCCGAGCTCGTGCCGAATTCGGCACGAGCAAATCCTCTCTTCCTCTTCACACACAGGCGTTGCCGCNGANACAGCGAGCGAGCGANAAANCGCGANGCGGAAGTGAGTGACACCNTGCNCGCGGTGGTGGCCAACNGCGGCCGCCGGGNNTTTNTNCNCANCCCACAGGTGGTGGCGCGCCCCGCCGCCCCAGGCGGCGCTGCCGCCGCCGCCTCATTGGGTGGCCATGCCCTTCCCCCCCCCGGGGGCGGCGGCCTTGGTTTTNCACNCCAAATGGCCCNGNGCCNCCCCATTTCCCCCCCCACTTCTTCCGTTCCACCCGGTCGGCCCGCCNCCCCCCCNNNNCCCNGGGGGGGNCCCCCCCCCTTGCCCTGGNAATGGGTCCCCCGG]




>consensus_13016#3
NGATTCGGCCGAGCTCGTGCCGAATTCGGCACGAGCAAATCCTCTCTTCCTCTTCACACA
CAGGCGTTGCCGCNGANACAGCGAGCGAGCGANAAANCGCGANGCGGAAGTGAGTGACAC
CNTGCNCGCGGTGGTGGCCAACNGCGGCCGCCGGGNNTTTNTNCNCANCCCACAGGTGGT
GGCGCGCCCCGCCGCCCCAGGCGGCGCTGCCGCCGCCGCCTCATTGGGTGGCCATGCCCT
TCCCCCCCCCGGGGGCGGCGGCCTTGGTTTTNCACNCCAAATGGCCCNGNGCCNCCCCAT
TTCCCCCCCCACTTCTTCCGTTCCACCCGGTCGGCCCGCCNCCCCCCCNNNNCCCNGGGG
GGGNCCCCCCCCCTTGCCCTGGNAATGGGTCCCCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13016#1      ------------------------------------------------------------
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      TCCTCTCGCCTCCAAATCCTCTCTTCCTCTTCACACACAGGCGTTGCCGCAGAGACAGCG 60
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      ------------------------------------------------------------
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      AGCGAGCGAGAGAGCGCGAGGCGGAGGTGAGTGACGACCATGCAGGCGGTGGTGGCGAAC 120
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      ------------------------------------------------------------
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      GGCGGCGGCGGGGACGTGGTGCAGAAGCCGCAGCAGGTGGTGGCGGCGCCGCCGCCGCCC 180
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      ------------------------------------------------------------
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      CAGGCGGCGCTGCCGCCGCCGCCTCATTGGGTGGCCATGCCGTTCGCGCCCCCGGGGGCG 240
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      ----------------AAAGCCGCCGCCCGTGGCCGTGGCGATGGGCTCCCCGGCGCCGC 44
consensus_13016#2      ------------------------------------------------------CACTTC 6
consensus_13016#0      GCGGCCATGGTAATGCAGCACCAGATGGCGCCGGCGCCGCCCCAGTTCGCCCCGCACTTC 300
consensus_13016#3      ------------------------------------------------------NGATTC 6
                                                                                  *

consensus_13016#1      ACGCGCAGGGCGGCGGCGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCGACCTCC 104
consensus_13016#2      GTGCCGTTCCACGCGGCGGCGGGCAGGAGGAGAACAAGACCATCTGGGTCGGCGACCTCC 66
consensus_13016#0      GTGCCGTTCCACGCGGCGGCGGGCAGGAGGGGAACAAGACCATCTGGGTCGGCGACCTCC 360
consensus_13016#3      GGCCGAGCTCGTGCCGAATTCGGCACGAGCAAATCCTC-TCTTCCTCTTCACACACAGGC 65
                          *        ** *     **** ***   * *     * **    **    **   *

consensus_13016#1      ACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAG 164
consensus_13016#2      ACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAG 126
consensus_13016#0      ACTACTGGATGGACGAGAACTACCTCCACAGCTGCTTCGGCTACACCGGCGAGGTTGTAG 420
consensus_13016#3      GTTGCCGCNGANACAGCGAGCGAGCGANAAANCGCGANGCGGAAGTGAGTGACACCNTGC 125
                         * * *     **    *          *   **   *   *     * **     *  

consensus_13016#1      CAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGT 224
consensus_13016#2      CAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGT 186
consensus_13016#0      CAATAAAGGTTATTCGTAATAAGCAAACTGGACAATCGGAGGGTTATGGATTTGTAGAGT 480
consensus_13016#3      NCGCGGTGGTGGCCAACNGCGGCCGCCGGGNNTTTNTNCNCANCCCACAGGTGGTGGCGC 185
                              ***             *     *                     * ** * * 

consensus_13016#1      TCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAA 284
consensus_13016#2      TCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAA 246
consensus_13016#0      TCTACAGTCATGCTGCTGCTGAGAAAGTACTTGAAGGATTTGCTGGTCATATAATGCCAA 540
consensus_13016#3      GCCCCGCCGCCCCAGGCGGCGCTGCCGCCGCCGCCTCATTGGGTGGCCATGCCCTTCCCC 245
                        *  *       * *  *  *     *     *    *** * *** ***    * **  

consensus_13016#1      ACACTGAC--CAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTC 342
consensus_13016#2      ACACTGAC--CAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTC 304
consensus_13016#0      ACACTGAC--CAACCTTTTAGGATAAATTGGGCATCATTTAGCATGGGGGACAGACGTTC 598
consensus_13016#3      CCCCCGGGGGCGGCGGCCTTGGTT---TTNCACNCCAAATGGCCCNGNGCCNCCCCATTT 302
                        * * *    *  *    * ** *   **   *  **  * **   * *      * ** 

consensus_13016#1      AGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATAC 402
consensus_13016#2      AGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATAC 364
consensus_13016#0      AGATATTGCTTCAGATCATTCCATATTTGTAGGCGACCTTGCTTCTGATGTCAATGATAC 658
consensus_13016#3      CCCCCCCCACTTCTTCCGTTCCACCCGGTCGGCCCGCCNCCCCCCCNNNNCCCNGGGGGG 362
                                 *     * *****        * *  **   *  *      *   *    

consensus_13016#1      CACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTAT 462
consensus_13016#2      CACATTACTAGAGACTTTCTCCAAAAG--------------------------------- 391
consensus_13016#0      CACATTACTAGAGACTTTCTCCAAAAGGTACTCCTCTGTCAAAGGTGCGAAAGTTGTTAT 718
consensus_13016#3      GNCCCCCCCC----CTTGCCCTGGNAATGGGTCCCCCGG--------------------- 397
                         *    *      *** * *    *                                  

consensus_13016#1      TGATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGA 522
consensus_13016#2      ------------------------------------------ATTTGGAGATGATAACGA 409
consensus_13016#0      TGATGCTAATACTGGTAGATCAAAGGGCTATGGTTTTGTGAGATTTGGAGATGATAACGA 778
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      GAAGACACATGCCATGACTGAGATG-AATGGTGTGTATTGCTCTACCAGGCCAATGAGAA 581
consensus_13016#2      GAAGACACATGCCATGACTGAGATNGAATGGTGTGTATTGCTCTACCAGGCCAATGAGAA 469
consensus_13016#0      GAAGACACATGCCATGACTGAGATG-AATGGTGTGTATTGCTCTACCAGGCCAATGAGAA 837
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      TTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTC 641
consensus_13016#2      TTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTC 529
consensus_13016#0      TTGGCCCTGCAACTCCCAGAAAAACCTCAGGTACTTCTGGACCTACTGGTTCAGCTGCTC 897
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      GATCAGATGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTA 701
consensus_13016#2      GATCAGATGGAGATTTGACAA--------------------------------------- 550
consensus_13016#0      GATCAGATGGAGATTTGACAAACACAACTGTATTTGTCGGTGGGCTTGATCCAAATGTTA 957
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      GTGAAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCC 761
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      GTGAAGATGACCTTAGGCAAACATTTTCGCAATACGGTGAAATTTCATCGGTAAAGATCC 1017
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      CAGTTGGGAAACAGTGCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCAT 821
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      CAGTTGGGAAACAGTGCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCAT 1077
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      TGCAAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCA 881
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      TGCAAGGACTGAACGGAAGCACCATTGGGAAACAGACCGTGCGTCTTTCGTGGGGACGCA 1137
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      ATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACT 941
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      ATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGATGTACT 1197
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      ACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGG 1001
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      ACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGG 1257
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      GCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCT 1061
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      GCATGTACGCTGCTGCTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCT 1317
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      AAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCT 1121
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      AAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCTAGGCACGCAAGCATTAGCAGTAGCT 1377
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      CTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGT 1181
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      CTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGATGCAGT 1437
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      CACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATT 1241
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      CACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATT 1497
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      GACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCAC 1301
consensus_13016#2      ------------------------------------------------------------
consensus_13016#0      GACTGGCCATGGTCTGCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCAC 1557
consensus_13016#3      ------------------------------------------------------------
                                                                                   

consensus_13016#1      CTTATTGAAGTAGAACAATAAACTATTCAAATACCT------------- 1337
consensus_13016#2      -------------------------------------------------
consensus_13016#0      CTTATTGAAGTAGAACAATAAACTATTCAAATACCTACTAAAAAGCGGC 1606
consensus_13016#3      -------------------------------------------------