|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1415 fasta sequence
[CCTCTCCGCCTTCTTCTCTCTCGCTCGCACGCACGCACGCGTGCAGTCGCGCGCCCCGTTTGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCCCCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCGCGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTTTGTTCTTCGTGTTCCTCCTGTTTCAATTCCATTCTTCCATTGCGGGCGTCTAGTGATCGATCGAGGTAGGCTAGGTTTAGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTCGGCGTCAGCGGCGGCGGATGCTATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCG-CAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGG---------GGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTACATGGATTT]
[+] EMBL CB641079 [CCTCTCCGCCTTCTTCTCTCTCGCTCGCACGCACGCACGCGTGCAGTCGCGCGCCCCGTTTGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCCCCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCGCGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTTTGTTCTTCGTGTTCCTCCTGTTTCAATTCCATTCTTCCATTGCGGGCGTCTAGTGATCGATCGAGGTAGGCTAGGTTTAGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCCCCGCCGCCG ]
[+] EMBL CB683189 [ CCGCCTTCTTCTCTCTCGCTCGCACGCACGCACGCAGGCAGTCGCGCGCCCCGTTTGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCCCCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCGCGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTTTGTTCTTCGTGTTCCTCCTGTTTCAATTCCATTCTTCCATTGCGGGCGTCTAGTGATCGATCGAGGTAGGCTAGGTTTAGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTCGGCGTCAGCGGCGGCGGATGCTATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGGCATCACTACTCTCCCGCCGCCGCCGCAGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCG CAGTAC ]
[+] EMBL CB637401 [ AGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCT ]
[+] EMBL CB628638 [ AATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAGGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTCGGCGTCGGCGGCGGAGGAGGCTATCACCATCAGCCGCAATAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGGGTTCGCCATCAGTACTCTCTTGCCGCCGGCGCCGCGGTTGTCTTTGGATACTACGGCCAGTCGCCGACA TTCTG ]
[+] EMBL CB638368 [ TATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCAGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCG CAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGTGGCCAACACGTCCTCGACTACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAAGACGCCTTCCCCAAT ]
[+] EMBL CB640103 [ CCGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCG CAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGG GGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGC ]
[+] EMBL CB639078 [ CGCAGCAGCTCTTCTCCCGCCCCCCGGTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCG CAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAAGCTGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTTGTCCACGCCTTCGCTGAAGGCCCGTACCCGCTGCGCG ]
[+] EMBL CB668031 [ CACTACTCTCCCGCCGCCGCCGCCGCGGCTGCCTTTGGATACCAGGTCCAGTCGCCG CAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACTAAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGCCCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTACTACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGG GGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTA ]
[+] EMBL CB620707 [ AGGACGCCTTCCCCAATGGCGGGGGTGGCGGCGGTGGCGGCGGGGGGTCGCCGGCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCGGGCGGCGTGACACCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTACATGGATTT]
[+] EMBL CB630621 [ GTCCCTGCCACTACTTCTCCAAAGGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCGCTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCGGGCGGCGTGACACCGGGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAGCCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAAGCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGGCTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTGGTTCTCGCGGAGGACGCTGCCAAGTACATGGATTT]
consensusID : consensus_13020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 480 fasta sequence
[CTTCTCTCTCGCTCGCACGCACGCACGCAGGCAGTCGCGCGCCCCGTTTGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCCCCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCGCGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTTTAGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGACGC]
[+] EMBL CB636913 [CTTCTCTCTCGCTCGCACGCACGCACGCAGGCAGTCGCGCGCCCCGTTTGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCCCCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCGCGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTTTAGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTG ]
[+] EMBL CB637094 [ CCCGTTTGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCCCCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCGCGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGTATGCCC AGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAGGTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTCGGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACTAGTTGGTGCAGCTCGCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACCGTCATCTATGCCCGCTGCTCCGCCGACGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13020#0 CCTCTCCGCCTTCTTCTCTCTCGCTCGCACGCACGCACGCGTGCAGTCGCGCGCCCCGTT 60
consensus_13020#1 ------------CTTCTCTCTCGCTCGCACGCACGCACGCAGGCAGTCGCGCGCCCCGTT 48
**************************** ******************
consensus_13020#0 TGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCC 120
consensus_13020#1 TGAACTGGGCCAAGGCGACGACTAGGCTTCGATCGGCGAGCGAGCCCTCCGCTCGATCCC 108
************************************************************
consensus_13020#0 CCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCG 180
consensus_13020#1 CCCGCATGCGATGCGATGCGATCGATGCGCGCGCGATACTATCCACCCGATCGAATCGCG 168
************************************************************
consensus_13020#0 CGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTT 240
consensus_13020#1 CGCTCTCGATCGATCTCGAATTTTATTCCTCCTTTGTTGTTATAAAAGGAGGCCCAGGTT 228
************************************************************
consensus_13020#0 TGTTCTTCGTGTTCCTCCTGTTTCAATTCCATTCTTCCATTGCGGGCGTCTAGTGATCGA 300
consensus_13020#1 T----------------------------------------------------------- 229
*
consensus_13020#0 TCGAGGTAGGCTAGGTTTAGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAG 360
consensus_13020#1 ------------------AGGTTTCATGTCCACCAGTGGTGGTGGTGGGTGGCAATGGAG 271
******************************************
consensus_13020#0 GTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTC 420
consensus_13020#1 GTGCCGGAGTTAGTGAAGCTGGCGTTCGCGAGGGTGCAGAGGGTGGAGCCGGAGCATGTC 331
************************************************************
consensus_13020#0 GGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTC 480
consensus_13020#1 GGCAAGATATTCGGCGTAATGCTGCTGAGGGAGCCCGACGAGGACGAGTTGGTGCAGCTC 391
************************************************************
consensus_13020#0 GCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACC 540
consensus_13020#1 GCATATGGTCCCGAGGCCACGCTCCTCGCCAAGATCGAGGATACTAAAGCCGCGCTCACC 451
************************************************************
consensus_13020#0 GTCATCTATGCCCGCTGCTCCGCCGCCGCCGCGCACGGACCTCCCGGTGGCGGCGGCGTC 600
consensus_13020#1 GTCATCTATGCCCGCTGCTCCGCCGACGC------------------------------- 480
************************* ***
consensus_13020#0 GGCGTCAGCGGCGGCGGATGCTATCACCAGCAGCCGCAGCAGCTCTTCTCCCGCCCCCCG 660
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 GTACCTGCTTGCGGCGGCGTTCGCCATCACTACTCTCCCGCCGCCGCCGCCGCGGCTGCC 720
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 TTTGGATACCAGGTCCAGTCGCCGCAGTACTGGCCGGACTCGCCGCCGGCGCCACCGACT 780
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 AAGGCGGCGCAGCAGGAGTTCGCGCCTCCCGGGCTCGTCGTCGACGCCTCCGCGGAGGGC 840
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 CCGTACCCGCTGCGCGGCGGCCAACACGTCCTCGACGACAACAACTTTGGCGGCGGGTAC 900
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 TACTACCCGGCCGGCGAGGACGCCTTCCCCAATGGCGGGGGTGGCGGCGGGGGGTCGCCG 960
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 GCGAGGGCGCGGCGTTCGAACGGGCTGTCCACTCGACGTCCCTGCCACTACTTCTCCAAA 1020
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 GGCATCTGCAAGAACGGCCAGAACTGCCACTACTCGCACCACCAGGTGTACCAGGACGCG 1080
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 CTCGCCGGCGCCGCCATCAACGGCGACGTGTACAACCACCAGCCAGGCGGCGTGACGCCG 1140
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 GGCTCGCTCGAGACGCTGGAGATGGAGATCACCGAGCTGCTCAACTCGCGGCGCGGGCAG 1200
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 CCGGTGTCCATCGCCTCGCTGCCGACGCTCTACGGCGAGAAGTACGGCAAGGGACTCCAA 1260
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 GCCGACGGCTACCTCACCGAGAGCCAGCGCCATGGCAAGGCCGGATACAGCCTCACCAGG 1320
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 CTGCTCTCTCGCCTCAACAAGATACGGGTCATCGAAAGGCCGCACGGGCAGCATTCGGTG 1380
consensus_13020#1 ------------------------------------------------------------
consensus_13020#0 GTTCTCGCGGAGGACGCTGCCAAGTACATGGATTT 1415
consensus_13020#1 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||