These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2396 fasta sequence [CGAGGAGAGCGCTCACTTCGCCACGACGTCAACCCTCTCTCGTCTCTCTTCTCCTAGCCGACGCGACGACGACGACGACGTCGTCGGTGTCGCCTCCGCGCGCGCGGCGCGCTGCTCCCCTGCACGCCGCCGCCGACCCACGGTTTTGTCTCCCCACCCATCCCAGGTACGGCGCCTCGCCGCGTTCTCTTCTCCAGGTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCGCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACAATCAATCGAATGGTCCTGGCACTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGAAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGCACAGTACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAG-CACCTGG-CCGAGCATTGCAGAGCT-GAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTG-TTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCAACTTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTT---GCCCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTAGTGGTGCTGTCTGCGGGTCAGATAATTTGAGTCCTGAAGACCAGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGTTTTTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAGCAGCTGGACAGTTGATTATCATTGCATCGATGATACTGTCATTTGAG-CTTCCTTTTGCTCTAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCAAAAGCCATTTCTGTGATAACATGGGGAATTGGTTCGTTTATCGTTGTCATCAACACCTACTTCCTGATAACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAGTATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACCTCGTTTTCCGGAAGAACAGGAAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCCGCATAGTAGGTCGCGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCT-CCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA-GCCCA-AAGAGTTAGCCA-GCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAAT-TCCACATATATAGTGACAATAATTTT-GTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACCAAA-GCTTCTTACTTAGAATCTTATACA--TTTCGAATATATGTCCTCTTGTGCACATGCTAAATTTTCAGGAATAGCAGCAGTGCACTGGCTCATGTCATTGGATATCATCAAAATGCCATATCTATTGAACAAAAAAAAGCTCCGATTGAATTTTCCTCTCCTGTACTCAATCCATTTTTAATGTCTGACGCTGTTTAACTTGGAAAAAAAAAA] [+] EMBL CF305541 [CGAGGAGAGCGCTCACTTCGCCACGACGTCAACCCTCTCTCGTCTCTCTTCTCCTAGCCGACGCGACGACGACGACGACGTCGTCGGTGTCGCCTCCGCGCGCGCGGCGCGCTGCTCCCCTGCACGCCGCCGCCGACCCACGGTTTTGTCTCCCCACCCATCCCAGGTACGGCGCCTCGCCGCGTTCTCTTCTCCAGGTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCGCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCC ] [+] EMBL AK070574 [ GTCAACCCTCTCTCGTCTCTCTTCTCCTAGCCGACGCGACGACGACGACGACGTCGTCGGTGTCGCCTCCGCGCGCGCGGCGCGCTGCTCCCCTGCACGCCGCCGCCGACCCACGGAGAGGACTCCCCACCCATCCCAGGTACGGCGCCTCGCCGCGTTCTCTTCTCCAGGTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCGACCACCGCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACAATCAATCGAATGGTCCTGGCACTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGAAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGCACAGTACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAG CACCTGG CCGAGCATTGCAGAGCT GAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTG TTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCAACTTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTT GCCCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTAGTGGTGCTGTCTGCGGGTCAGATAATTTGAGTCCTGAAGACCAGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGTTTTTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAGCAGCTGGACAGTTGATTATCATTGCATCGATGATACTGTCATTTGAG CTTCCTTTTGCTCTAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCAAAAGCCATTTCTGTGATAACATGGGGAATTGGTTCGTTTATCGTTGTCATCAACACCTACTTCCTGATAACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAGTATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACCTCGTTTTCCGGAAGAACAGGAAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCCGCATAGTAGGTCGCGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCT CCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA GCCCA AAGAGTTAGCCA GCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAAT TCCACATATATAGTGACAATAATTTT GTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACCAAA GCTTCTTACTTAGAATCTT ] [+] EMBL CF276044 [ AGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAATGCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACAATCAATCGAATGGTCCTGGCACTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGAAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGCACAGTACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAG CACCTGG CCGAGCATTGCAGAGCT GAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTT ] [+] EMBL OSU60767 [ CCCGGATTTCTTATCTCTATTGCGTATATTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGCACAGTACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAGCCACCTGGCCCGAGCATTGCAGAGGTGGAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTTTGCTTTGAACATGCTCTTT AAATCCCTGTGTGGTGTGGTGATTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCAACTTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGTGGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGAATTGGTACTATCAAGAAAAGAAAAAAGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTTTTGGCCCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTAATAATACTGTCTGCGGGTCAGATAATTTGAGTCCTGAAGACCAGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGTTTTTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAGCAGCTGGACAGTTGATTATCATTGCATCGATGATACTGACATTTGAGCCTTCCTTTGCCTCTAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCA ] [+] EMBL CA758671 [ CAGTAGCCTTGTTGGCGTCTGGCCAGAGTCCTACAATTACAGGAACTTATGCGGGACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAGCAGCTGGACAGTTGATTATCATTGCATCGATGATACTGTCATTTGAG CTTCCTTTTGCTCTA ] [+] EMBL CB097067 [ aGGGGCNGCACACAAATTCAAAAGCCATTTCTGTGATAACATGGGGAATNGGTTCGTTTATCGTTGTCATCAACACCTACTTCCTGATNACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAGTATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACCTCGNTTTCCGGAAGAACAGGNAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCCGCATAGTAGGTCGNGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCT CCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTTAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA GCCCA AAGAGTTAGCCA GCTGATCCCTCATGTATTCACCTGGATCATNCTAGTGAATACTGCATACTACTAAT TCCACATATATAGCGACAAGAATTTT GTCTTGATATCTGNTACTGCCGATTGTACACGATGGTTAGCTAACTGNGATCCTGTGACACCAAAGGCTTCTTACTTAGAATCTTATACA TTTCGAATATATGnnct ] [+] EMBL CB096859 [ GGGGCAGCACACAAATTCAAAAGCCATTTCTGTGATAACATGGGGAATTGGTTCGTTTATCGTTGTCATCAACACCTACTTCCTGATAACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAGTATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACCTCGTTTTCCGGAAGAACAGGAAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCCGCATAGTAGGTCGCGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCT CCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA GCCCA AAGAGTTAGCCA GCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAAT TCCACATATATAGTGACAATAATTTT GTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACCAAA GCTTCTTACTTAGAATCTTATACA TTT ] [-] EMBL CF276045 [ GAGGGCGATTCGACGGTCCGCATAGTAGGTCGCGACGCGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGGAGGACATCTNCCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAGATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCAGCTAGTAGCTACCTACATA GCCCA AAGAGTTAGCCA GCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAAT TCCACATATATAGTGACAATAATTTT GTCTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACCAAA GCTTCTTACTTAGAATCTTATACA TTTCGAATATATGTCCTCTTGTGCACATGCTAAATTTTCAGGAATAGCAGCAGTGCACTGGCTCATGTCATTGGATATCATCAAAATGCCATATCTATTGAACAAAAAA ] [+] EMBL BI811978 [ ATGATAATCATGCAGCTAGTAGCTACCTACATAGGCCCACAAGAGTTAGCCACGCTGATCCCTCAGGTATTCACCTGGATCATCCTAGTGAATACTGCATACTACTAATGTCCACATATATAGGGACAAGAATTTTGGTCTTGATATCTGGTACTCCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACCCCAAA GCTTCTTACTTAGAATCTTATACACGTTTCGAATATAGGTCCTCTTGCGCACATGATAAATTTTCAGGAATAGC CCAGTGCACTGGCTCATGTCATTGGATATCATC AAATGCCATATCTATTGAACAATCCTAAGCTCCGATTGAATTTTCCTCTCCTGTACTCAATCCATTTTTAATGTCTGACGCTGTTTAACTTGGAAAAAAAAAA] consensusID : consensus_13021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence [NACAAGGGGGGNGANGCCGCATAATCTTTTTCTCCCTCAGCATTGGTACTTTCAAGAAAAGAGCCACGGTCNGNTCATGGGATCAGAGAGGCATGTANATNCTATACTGATTGAAAGTGCATTTGCCCTCACGATAGCGTNCCTCATTAACATNTCTATCNTATCTGNTAGTGGTGCTGTCTGCGGGCACAGATAATTTGAGTCCTGAAGACCACGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGATTNTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTNGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACANTTACAGNAACTTATGCGGGACAATATGTCATGCNGGGGCTTCTAGATCTTCGNATGACACCCTGGATACGGAACCTTCTAACTANAGTCCTTGNCAATTCTGCCAAGTCTGANTGTTTCNATAANCTGGAGGTTCCTCAGCAGCTGAACAGNTGATTNTCATTGCATNCGATGATACTGTCATTTGNGCTTCCTTTTGCTCTAGNTCCACTCCTAANATTCACAAGCANCANNACACNAATGGGNCAGCACACATCATTCNAAAGCCATTTGTGTGATAACATGGCGAATTGGNTCGTTTATCGCTGTCATNAACACCTACTTNCTGGTAACAAGCTTTGTCAAGCTGTTTACTNCACAACGGTCCTATCGCCTGTATGCCAANTATTCCTCNGNCACATTCNGGCNTCCTGGGGATGCCTCATATACATGGCTGNNAAT] [+] EMBL CB096513 [NACAAGGGGGGNGANGCCGCATAATCTTTTTCTCCCTCAGCATTGGTACTTTCAAGAAAAGAGCCACGGTCNGNTCATGGGATCAGAGAGGCATGTANATNCTATACTGATTGAAAGTGCATTTGCCCTCACGATAGCGTNCCTCATTAACATNTCTATCNTATCTGNTAGTGGTGCTGTCTGCGGGCACAGATAATTTGAGTCCTGAAGACCACGATGAATTGCAGTGATCTTGATCTTAACAAAGCTTCGATTNTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTNGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACANTTACAGNAACTTATGCGGGACAATATGTCATGCNGGGGCTTCTAGATCTTCGNATGACACCCTGGATACGGAACCTTCTAACTANAGTCCTTGNCAATTCTGCCAAGTCTGANTGTTTCNATAANCTGGAGGTTCCTCAGCAGCTGAACAGNTGATTNTCATTGCATNCGATGATACTGTCATTTGNGCTTCCTTTTGCTCTAGNTCCACTCCTAANATTCACAAGCANCANNACACNAATGGGNCAGCACACATCATTCNAAAGCCATTTGTGTGATAACATGGCGAATTGGNTCGTTTATCGCTGTCATNAACACCTACTTNCTGGTAACAAGCTTTGTCAAGCTGTTTACTNCACAACGGTCCTATCGCCTGTATGCCAANTATTCCTCNGNCACATTCNGGCNTCCTGGGGATGCCTCATATACATGGCTGNNAAT] consensusID : consensus_13021#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [AATGGTCCCCCTTCTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGTTGAGACAGACCTACAGGCTGGAGCACAGGACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAGCACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTATGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTGCTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAACAACTTGTTTCTTACTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACACGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTTGCCCTCACGATAGCGTTCCTCATTAACATATC] [+] EMBL CB660903 [AATGGTCCCCCTTCTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGTTGAGACAGACCTACAGGCTGGAGCACAGGACAAATATGAGCTTCTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGGCTAGGAGTCGTGACTGGGAAGCACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGTAATTGGAACTGCTTATGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTGCTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAACAACTTGTTTCTTACTTGAGCTTGGGTATTCTAAACCAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACACGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGATTCTATATGATTGAAAGTGCATTTGCCCTCACGATAGCGTTCCTCATTAACATATC] consensusID : consensus_13021#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [TTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAATTCTTCAGAAGTTGTGAGGGCCCTTTTCGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAGTCTTCTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGGCAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAGCTAGGTCCTTGGCAATTCTGCCAAGTCTG] [-] EMBL CB238435 [TTGTTTCTTAGTTGAGCTTGGGTATTCTAAACCAATTCTTCAGAAGTTGTGAGGGCCCTTTTCGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCGCATAGTCTTCTTCTCCACTCAGCATTGGTACTATCAAGAAAAGTGCCACGGTCAGTTCATGGGATCAAAAATGTCCTCGGAAACTGGAGCTCAAAGTTATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGGCAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAGCTAGGTCCTTGGCAATTCTGCCAAGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 CGAGGAGAGCGCTCACTTCGCCACGACGTCAACCCTCTCTCGTCTCTCTTCTCCTAGCCG 60 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 ACGCGACGACGACGACGACGTCGTCGGTGTCGCCTCCGCGCGCGCGGCGCGCTGCTCCCC 120 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TGCACGCCGCCGCCGACCCACGGTTTTGTCTCCCCACCCATCCCAGGTACGGCGCCTCGC 180 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 CGCGTTCTCTTCTCCAGGTTCGCTTTGCAGAACTCCCTAACAAGAACCAGATCCAACCCG 240 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 ACCACCGCTCCAAGTCTTGAGGGTTCTTGCATTGGGAGAGGGGGAGATGAGCGGCCCAAT 300 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 GCAACGCTCGTCGCAGCCACAGTTTATCTCTAGCGTCGAGCGGAACAATCAATCGAATGG 360 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TCCTGGCACTCCTCTTATTGACAGCATAGATGTTGATCAGATTGTTATTCCAGAGAAAAA 420 consensus_13021#1 ----------------------------------------------------NACAAGGG 8 consensus_13021#2 -----------AATGGTCCCCCTTCTCCTC-TTATTGACAGCATAGATGTTGATCAGATT 48 consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TAGTTGGAAGAACCTATTTTCATACATAGG-GCCCGGATTTCTTGTCTCTATTGCGTATA 479 consensus_13021#1 GGGNGANGCCGCATAATCTTTTTCTCCCTCAGCATTGGTACTTTCAAGAAAAGAGCCACG 68 consensus_13021#2 GTTATTCCAGAG---TTGAGACAGACCTACAGGCTGGAGC-ACAGGACAAATATGAGCTT 104 consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TTGATCCTGGAAATTTTGAGACAGACCTACAGGCTGGAGC-ACAGTACAAATATGAGCTT 538 consensus_13021#1 GTCNGNTCATGGGATCAGAGAGGCATGTANATNCTATACTGATTGAAAGTGCATTTGCCC 128 consensus_13021#2 CTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGG 164 consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 CTTTGGATCATACTTATTGCGTCATGTGCTGCTCTTATAATTCAATCACTTGCAGCTAGG 598 consensus_13021#1 TCACGATAGCGTNCCTCATTAACATNTCTATCNTATCTGNTAGTGGTGCTGTCTGCGGGC 188 consensus_13021#2 CTAGGAGTCGTGACTGGGAAGCACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCT 224 consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 CTAGGAGTCGTGACTGGGAAGCACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCT 658 consensus_13021#1 ACAGATAATTTGAGTCCTGAAGACCACGATGAATTGCAGTGATCTTGATCTTAACAAAGC 248 consensus_13021#2 ACAAATTTCATATTATGGATTCTTGCGGAACTAG---CTGTAGTTGCATGCGACATTCCT 281 consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 ACAAATTTCATATTATGGATTCTTGCGGAACTAG---CTGTAGTTGCATGCGACATTCCT 715 consensus_13021#1 TTCGATTNTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGTTATTNGCAGTAGCCTT 308 consensus_13021#2 GAAGTAATTGGAACTGC-TTATGC-TTTGAACATGCTCTTTAAAATCCCTGTGTGGTG-T 338 consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 GAAGTAATTGGAACTGC-TTTTGC-TTTGAACATGCTCTTTAAAATCCCTGTGTGGTG-T 772 consensus_13021#1 GTTGGCGTCTGGCCAGAGTTCTACANTTACAGNAACTTATGCGGGACAATATGTCATGCN 368 consensus_13021#2 GGTGCTCTGATAACTGGACTCAGCACTCTG-ATGCTA----CTGTTACTACAA-CAATAT 392 consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 GGTGTTCTGATAACTGGACTCAGCACTCTG-ATGCTA----CTGTTACTACAA-CAATAT 826 consensus_13021#1 GGGGCTTCTAGATCTTCGNATGACACCCTGGATACGGAACCTTCTAACTANAGTCCTTGN 428 consensus_13021#2 GGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAACA----ACTTG 448 consensus_13021#3 ---------------------------------------------------------TTG 3 consensus_13021#0 GGGGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCA----ACTTG 882 consensus_13021#1 CAATTCTGCCAAGTCTGANTGTTTCNATAANCTGGAGGTTCCTCAGCAGCTGAACAGNTG 488 ** consensus_13021#2 TTTCTTACTTGAGCTTG-GGTATTCTAAACCAAA-TTCTTCAGAAGTTGTGAGGGGCCTT 506 consensus_13021#3 TTTCTTAGTTGAGCTTG-GGTATTCTAAACCAA--TTCTTCAGAAGTTGTGAGGGCCCTT 60 consensus_13021#0 TTTCTTAGTTGAGCTTG-GGTATTCTAAACCAAA-TTCTTCAGAAGTTGTGAGGGGCCTT 940 consensus_13021#1 ATTNTCATTGCATNCGATGATACTGTCATTTGNGCTTCCTTTTGCTCTAGNTCCACTCCT 548 ** * * * * * ** * * * *** * * * * consensus_13021#2 TTTGTTCCTGAACTTAAAGG---GAATGGAGCCACACGTCTTGCTATCTCACTACTTG-G 562 consensus_13021#3 TTCGTTCCTGAACTTAAAGG---GAATGGAGCCACAGGTCTTGCTATCTCACTACTTG-G 116 consensus_13021#0 TTTGTTCCTGAACTTAAAGG---GAATGGAGCCACAGGTCTTGCTATCTCACTACTTG-G 996 consensus_13021#1 AANATTCACAAGCANCANNACACNAATGGGNCAGCACACATCATTCNAAAGCCATTTGTG 608 *** * * * ***** * ** * * * * *** * consensus_13021#2 TGCTATGGTGATG--CCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAA 620 consensus_13021#3 TGCTATGGTGATG--CCGCATAGTCTTCTTCTCCACTCAGCATTGGTACTATCAAGAAAA 174 consensus_13021#0 TGCTATGGTGATG--CCGCATAATCTTTTTCTCCACTCAGCATTGGTACTATCAAGAAAA 1054 consensus_13021#1 TGATAACATGGCGAATTGGNTCGTTTATCGCTGTCATNAACACC--TACTTNCTGGTAAC 666 ** ** ** * * * * * ** * * ** **** * * ** consensus_13021#2 GTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGA--------TTCTATATGATTG 672 consensus_13021#3 GTGCCACGGTCAGTTCATGGGATCAAAAATGTCCTCGGAAACTGGAGCTCAAAGTTATTT 234 consensus_13021#0 GTGCCACGGTCAGTTCATGGGATCAAAGAGGCATGTAGA--------TTCTATATGATTG 1106 consensus_13021#1 AAGCTTTGTCAAGCTGTTTACTNCACAACGGTCCTATCG--CCTGTATGCCAANTATTCC 724 ** * ** * * ** * * * * * * consensus_13021#2 AAAGTGCATTTGC---CCTCACGATAGCGTTCCTCATTAACATATC-------------- 715 consensus_13021#3 GCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGGGGCAA 294 consensus_13021#0 AAAGTGCATTTGC---CCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTA 1163 consensus_13021#1 TCNGNCACATTCN-GGCNTCCTG--GGGATGCCTCATATACATGGCTGNNAAT------- 774 * ** * ** * * * * ** *** consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 TATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTCTAGCT 354 consensus_13021#0 GTGGTGCTGTCTGCGGGTCAGATAATTTGAGTCCTGAAGACCAGATGAATTGCAGTGATC 1223 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 AGGTCCTTGGCAATTCTGCCAAGTCTG--------------------------------- 381 consensus_13021#0 TTGATCTTAACAAAGCTTCGTTTTTGTTAAAGAATGTCCTCGGAAACTGGAGCTCAAAGT 1283 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TATTTGCAGTAGCCTTGTTGGCGTCTGGCCAGAGTTCTACAATTACAGGAACTTATGCGG 1343 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 GACAATATGTCATGCAGGGGTTTCTAGATCTTCGGATGACACCCTGGATACGGAACCTTC 1403 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TAACTAGGTCCTTGGCAATTCTGCCAAGTCTGATTGTTTCGATAATTGGAGGTTCCTCAG 1463 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 CAGCTGGACAGTTGATTATCATTGCATCGATGATACTGTCATTTGAGCTTCCTTTTGCTC 1523 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TAGTTCCACTCCTAAAATTCACAAGCAGCAGGACAAAAATGGGGCAGCACACAAATTCAA 1583 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 AAGCCATTTCTGTGATAACATGGGGAATTGGTTCGTTTATCGTTGTCATCAACACCTACT 1643 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TCCTGATAACAAGCTTTGTCAAGCTGCTTCTCCACAACGGTCTATCGACTGTATCCCAAG 1703 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TATTCTCCGGGATATTCGGTTTCCTGGGGATGCTCATATACATGGCTGCAATTCTCTACC 1763 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TCGTTTTCCGGAAGAACAGGAAAGCTACCCTGCCATTGCTGGAGGGCGATTCGACGGTCC 1823 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 GCATAGTAGGTCGCGACACGGCCACTGAAGGAGAAGGTTCTCTTGGCCATCTGCCCCGGG 1883 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 AGGACATCTCCAGCATGCAGCTTCCTCAGCAGCGAACTGCTTCTGATCTCGATTAGAAAG 1943 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 ATGGCATACAAATACTCAAATCAATCACCAAAGAAATATACCACTGATGATAATCATGCA 2003 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 GCTAGTAGCTACCTACATAGCCCAAAGAGTTAGCCAGCTGATCCCTCAGGTATTCACCTG 2063 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 GATCATCCTAGTGAATACTGCATACTACTAATTCCACATATATAGTGACAATAATTTTGT 2123 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 CTTGATATCTGGTACTGCCGATTGTACACGATGGTTAGCTAACTGTGATCCTGTGACACC 2183 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 AAAGCTTCTTACTTAGAATCTTATACATTTCGAATATATGTCCTCTTGTGCACATGCTAA 2243 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 ATTTTCAGGAATAGCAGCAGTGCACTGGCTCATGTCATTGGATATCATCAAAATGCCATA 2303 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 ------------------------------------------------------------ consensus_13021#3 ------------------------------------------------------------ consensus_13021#0 TCTATTGAACAAAAAAAAGCTCCGATTGAATTTTCCTCTCCTGTACTCAATCCATTTTTA 2363 consensus_13021#1 ------------------------------------------------------------ consensus_13021#2 --------------------------------- consensus_13021#3 --------------------------------- consensus_13021#0 ATGTCTGACGCTGTTTAACTTGGAAAAAAAAAA 2396 consensus_13021#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||