cluster # 13023

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Oryza sativa
cluster # 13023 cluster # 13023 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13023#0 length = 1379 sequences # 10

consensus_13023#1 length = 561 sequences # 1
consensus_13023#2 length = 307 sequences # 1

consensusID : consensus_13023#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1379
fasta sequence

                              [ACGGCCATGCGAAGCCATGGCGCCCCTTTCGGTGTCGGCCATCCTCGCGCCGTCGCCGCCGCCAGCCCAGGCGGCCGCAAGGGCCTCGCCGCGCCGCGCGCCAGCGAGCGCCGCGCCTGTCGCCGCCGCCATTTCGACGGCATTGCTTGCTTTGACTCCTGCCGCGCACGCCGCGGCGTTCTCCAAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCG-CTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGAGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAGCGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCAGAGCCGGCTCGGGACGGACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCGGGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACTGTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCG-TTTTTTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCATGTGTGATATTCCAAATCGGTTTGAATCCTG-GAAAAAAAGGAATTGGCCCCAGCTTTCCATTCAAAAAAAAAAAA]

[+] EMBL CB649186             [ACGGCCATGCGAAGCCATGGCGCCCCTTTCGGTGTCGGCCATCCTCGCGCCGTCGCCGCCGCCAGCCCAGGCGGCCGCAAGGGCCTCGCCGCGCCGCGCGCCAGCGAGCGCCGCGCCTGTCGCCGCCGCCATTTCGACGGCATTGCTTGCTTTGACTCCTGCCGCGCACGCCGCGGCGTTCTCCAAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCG CTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB656978             [            AGCCCCGGCGCCCCTTTCGGTGTCGGCCATCCTCGCGCCGTCGCCGCCGCCAGCCCAGGCGGCCGCAAGGGCCTCGCCGCGCCGCGCGCCAGCGAGCGCCGCGCCTGTCGCCGCCGCCATTTCGACGGCATTGCTTGCTTTGACTCCTGCCGCGCACGCCGCGGCGTTCTCCAAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCGCCTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGATACAAAGGTGAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB623138             [                ATGGCGCCCCTTTCGGTGTCGGCCATCCTCGCGCCGTCGCCGCCGCCAGCCCAGGCGGCCGCAAGGGCCTCGCCGCGCCGCGCGCCAGCGAGCGCCGCGCCTGTCGCCGCCGCCATTTCGACGGCATTGCTTGCTTTGACTCCTGCCGCGCACGCCGCGGCGTTCTCCAAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCG CTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB623100             [                ATGGCGCCCCTTTCGGTGTCGGCCATCCTCGCGCCGTCGCCGCCGCCAGCCCAGGCGGCCGCAAGGGCCTCGCCGCGCCGCGCGCCAGCGAGCGCCGCGCCTGTCGCCGCCGCCATTTCGACGGCATTGCTTGCTTTGACTCCTGCCGCGCACGCCGCGGCGTTCTCCAAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCG CTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB623139             [                ATGGCGCCCCTTTCGGTGTCGGCCATCCTCGCGCCGTCGCCGCCGCCAGCCCAGGCGGCCGCAAGGGCCTCGCCGCGCCGCGCGCCAGCGAGCGCCGCGCCTGTCGCCGCCGCCATTTCGACGGCATTGCTTGCTTTGACTCCTGCCGCGCACGCCGCGGCGTTCTCCAAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCG CTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK058726             [                                                                                                                                                                                                 GTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCATCGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGCCGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTCGCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAAGGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCG CTGGGCTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGAGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAGCGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCAGAGCCGGCTCGGGACGGACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCGGGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACTGTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCG TTTTTTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCATGTGTGATATTCCAAATCGGTTT                                                     ]
[+] EMBL BF430566             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCCGGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGAGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAGCGTCGGGTTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCAGAGCCGGCTCGGGACGGACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCGGGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACTGTAAAT                                                                                                                                                                               ]
[-] EMBL CB649187             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACAAGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGAGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAGCGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCAGAGCCGGCTCGGGACGGACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCGGGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACTGTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCG TTTTTTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGACGTGTGTGATATTCCAAATCGG TTGAATCCTG GAAAAAAAGGA                                 ]
[+] EMBL CF589210             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGAGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAGCGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCAGAGCCGGCTCGGGACGGACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCGGGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACTGTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCGTTTTTTTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCATGTGTGATATTCCAAATCGGTTT                                                     ]
[+] EMBL AU101774             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACTGTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCG TTTTTTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCATGTGTGATATTCCAAATCGGTTTGAATCCTGTGAAAAAAAAAGATTGGCCCCAGCTTTCCATTCAAAAAAAAAAAA]




>consensus_13023#0
ACGGCCATGCGAAGCCATGGCGCCCCTTTCGGTGTCGGCCATCCTCGCGCCGTCGCCGCC
GCCAGCCCAGGCGGCCGCAAGGGCCTCGCCGCGCCGCGCGCCAGCGAGCGCCGCGCCTGT
CGCCGCCGCCATTTCGACGGCATTGCTTGCTTTGACTCCTGCCGCGCACGCCGCGGCGTT
CTCCAAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCAT
CGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGC
CGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTC
GCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGA
CCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAA
GGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCGCTGGG
CTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCC
GGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACA
AGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGA
CAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTAT
CCCGCTGGAAGAGCTTCCAAGCAAGACGAAGAGCATGGTGCGCAACGCGAAACAAGCCGA
GGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACGT
CATCATCATGGACTCGTATTGCGACAGCTCGAAGATCGTGGCGAAGACGCTCAACAGCGT
CGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGCGCA
GAGCCGGCTCGGGACGGACTCGTACAACCTGTCGGTCGTCGAAGTCGTCACGCCGTCGCG
GGTAATTCCTGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGAC
CACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACT
GTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCGTTTTTTTTTTGGGGTTTTT
CAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCATGTGTGATATTCCAAA
TCGGTTTGAATCCTGGAAAAAAAGGAATTGGCCCCAGCTTTCCATTCAAAAAAAAAAAA

consensusID : consensus_13023#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [CGCAAGATTACGTGCTGATCGATGTGAGGACGAGAAGGACAAGGCCAAAACCGGCGTGCCNCAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAATANCATGGTGCGCAACGCGAAACAAGCCGAGGCGGANATCGCCGGCTGAAGATCTCCTACCTCAAGANGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCNAAAGATCGTGGCNAAAACCTCAACACGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAANGGTGGGCGCAAANCCGGCTCGGGACGGACTCNTTACAACCTGTCNGTCGTCCAAAGTCGTCACGCCGTCNCGGGTTAATTCCTGCNGGCCGCTGATCNGCTCGTGACGGCTTCNTCNTCCGNTTCNCGGAAGACCACCAAGTCGTAAGCTTCTTCCCCGGCANCGGTGGACGGCTGAAAAAAAGGTGGGAATATCNCTTGTTAATCCCATATTCCCCTCATGTTTCTAATTTG]

[+] EMBL BE228567             [CGCAAGATTACGTGCTGATCGATGTGAGGACGAGAAGGACAAGGCCAAAACCGGCGTGCCNCAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAGCAAGACGAAATANCATGGTGCGCAACGCGAAACAAGCCGAGGCGGANATCGCCGGCTGAAGATCTCCTACCTCAAGANGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTGCGACAGCTCNAAAGATCGTGGCNAAAACCTCAACACGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAANGGTGGGCGCAAANCCGGCTCGGGACGGACTCNTTACAACCTGTCNGTCGTCCAAAGTCGTCACGCCGTCNCGGGTTAATTCCTGCNGGCCGCTGATCNGCTCGTGACGGCTTCNTCNTCCGNTTCNCGGAAGACCACCAAGTCGTAAGCTTCTTCCCCGGCANCGGTGGACGGCTGAAAAAAAGGTGGGAATATCNCTTGTTAATCCCATATTCCCCTCATGTTTCTAATTTG]




>consensus_13023#1
CGCAAGATTACGTGCTGATCGATGTGAGGACGAGAAGGACAAGGCCAAAACCGGCGTGCC
NCAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTATCCCGCTGGAAGAGCTTCCAAG
CAAGACGAAATANCATGGTGCGCAACGCGAAACAAGCCGAGGCGGANATCGCCGGCTGAA
GATCTCCTACCTCAAGANGATCGGCAAGGGCTCCAACGTCATCATCATGGACTCGTATTG
CGACAGCTCNAAAGATCGTGGCNAAAACCTCAACACGTCGGATTCAAGAACTGCTGGGTC
ATGGCCGGCGGCTTCTCCGGCAGGAAANGGTGGGCGCAAANCCGGCTCGGGACGGACTCN
TTACAACCTGTCNGTCGTCCAAAGTCGTCACGCCGTCNCGGGTTAATTCCTGCNGGCCGC
TGATCNGCTCGTGACGGCTTCNTCNTCCGNTTCNCGGAAGACCACCAAGTCGTAAGCTTC
TTCCCCGGCANCGGTGGACGGCTGAAAAAAAGGTGGGAATATCNCTTGTTAATCCCATAT
TCCCCTCATGTTTCTAATTTG

consensusID : consensus_13023#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [CCCCGTGGTGGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACTGTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCGTTTTTTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCATGTGTGATATTCCAAATCGGTTTGAATCCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF304654             [CCCCGTGGTGGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGACCACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACTGTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCGTTTTTTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCATGTGTGATATTCCAAATCGGTTTGAATCCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13023#2
CCCCGTGGTGGCGGCCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCACGGACGAC
CACGAGTCGTAAGCTTCTTCCCGGCAGCGTGGACGGCTGAAAGAGGCTGGAATAGTCACT
GTAAATCCCATATTCACCTCATGTTCTAGTTGCAACTCTCGTTTTTTTTTTGGGGTTTTT
CAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCATGTGTGATATTCCAAA
TCGGTTTGAATCCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13023#0      ACGGCCATGCGAAGCCATGGCGCCCCTTTCGGTGTCGGCCATCCTCGCGCCGTCGCCGCC 60
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      GCCAGCCCAGGCGGCCGCAAGGGCCTCGCCGCGCCGCGCGCCAGCGAGCGCCGCGCCTGT 120
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      CGCCGCCGCCATTTCGACGGCATTGCTTGCTTTGACTCCTGCCGCGCACGCCGCGGCGTT 180
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      CTCCAAGGAGGACGTCGCCGGCTCCGTGACCAAGGTGGTGGACACGGTGGACCAGGTCAT 240
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      CGGCGTCGGCGGCAAGGTGGCCGAGCAGTCCGCCGGCGTGCTCAAGGCGCTGGGCGAGGC 300
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      CGCGAAGCCGGCCCTGCCTGCGCTGAAGAGCGCCGGCGAGCAGGCGCTGAAGCTCGCCTC 360
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      GCCGGTGGTCTCCGGCGCCTCCAAGCAAGCCACGGAGGCGCTCCAGGGCGCCGGCGTCGA 420
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      CCCCGCCCCCGTTCTGTCCGCCGCTAAGACCGTCGCGGACGCGGCGCAGCAGGGCACGAA 480
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      GGTCATCGACGCCGCGAAGCCCATCGCGTCGGCGACGGTGGAGACCATCGGGTCGCTGGG 540
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      CTCCGCGGACTACGTCGTGGTCGCCGGAGCGGCGTTCCTCGCGTACCTGCTCCTGCCGCC 600
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      GGCATGGTCCCTGCTTTCTTTCACTCTCCGCGGCTACAAAGGTGACCTGACCGCTGCACA 660
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      AGCTCTGGACATGGTGACCTCGCAAGATTACGTGCTGATCGATGTGAGGACCGAGAAGGA 720
consensus_13023#1      --------------------CGCAAGATTACGTGCTGATCGATGTGAGGAC-GAGAAGGA 39
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      CAAGGCCAAAACCGGCGTGCCACAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTAT 780
consensus_13023#1      CAAGGCCAAAACCGGCGTGCCNCAGCTCCCCTCGAACGCGAAGAACAAGCTCATCTCTAT 99
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      CCCGCTGGAAGAGCTTCCAAGCAAGACGAAG-AGCATGGTGCGCAACGCGAAACAAGCCG 839
consensus_13023#1      CCCGCTGGAAGAGCTTCCAAGCAAGACGAAATANCATGGTGCGCAACGCGAAACAAGCCG 159
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      AGGCGGAGATCGCCGCGCTGAAGATCTCCTACCTCAAGAGGATCGGCAAGGGCTCCAACG 899
consensus_13023#1      AGGCGGANATCGCCG-GCTGAAGATCTCCTACCTCAAGANGATCGGCAAGGGCTCCAACG 218
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      TCATCATCATGGACTCGTATTG-CGACAGCTCGAA-GATCGTGGCGAAGACGCTCAACAG 957
consensus_13023#1      TCATCATCATGGACTCGTATTG-CGACAGCTCNAAAGATCGTGGCNAAAAC-CTCAACA- 275
consensus_13023#2      ------------CCCCGTGGTGGCGGCCGCTGATCGGCTCGTGACGG-------CTTCGT 41
                                    * ***  ** ** * ***     * ***** *         *  *  

consensus_13023#0      CGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAAGGGTGGGC 1017
consensus_13023#1      CGTCGGATTCAAGAACTGCTGGGTCATGGCCGGCGGCTTCTCCGGCAGGAAANGGTGGGC 335
consensus_13023#2      CGTCGGCTTCACGGACGACCACG----AGTCGTAAGCTTCTTC--CCGGCAGCGTGGACG 95
                       ****** **** * **  *   *     * **   ****** *  * ** *  *  *   

consensus_13023#0      GCAGAGCCGGCTCGGGACGGACTCGT-ACAACCTGTCGGTCGTC-GAAGTCGTCACGCCG 1075
consensus_13023#1      GCAAANCCGGCTCGGGACGGACTCNTTACAACCTGTCNGTCGTCCAAAGTCGTCACGCCG 395
consensus_13023#2      GCTGAAAGAGGCTGGAATAGTCACTGTAAATCCCAT-ATTCACCTCATGTTCTAGTTGCA 154
                       **  *    *   ** *  * * *   * * **  *   **  *  * **  *     * 

consensus_13023#0      TCGCGGGT-AATTCCTGCGG-CCGCTGATCGGCTCGTGACGGCTTCGTCGTCGGCTTCAC 1133
consensus_13023#1      TCNCGGGTTAATTCCTGCNGGCCGCTGATCNGCTCGTGACGGCTTCNTCNTCCGNTTCNC 455
consensus_13023#2      ACTCTCGTTTTTTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAAT 214
                        * *  **   **  *   *     * *     *    * **      * *         

consensus_13023#0      GGACGACCAC-GAGTCGTAAGCTTCTTC--CC-GGCAGCG-TGGACGGCTGAAAGA--GG 1186
consensus_13023#1      GGAAGACCACCAAGTCGTAAGCTTCTTC--CCCGGCANCGGTGGACGGCTGAAAAAAAGG 513
consensus_13023#2      AGTTGTGCCATGTGTGATATTCCAAATCGGTTTGAATCCTGTGAAAAAAAAAAAAAAAAA 274
                        *  *  *     **  **  *    **     *    *  ** *      *** *    

consensus_13023#0      CTGGAATAGTCACTGTAAATCCCATATTCACCTCATGTT-CTAGTTGCAACTCTCGTTTT 1245
consensus_13023#1      TGGGAATATCNCTTGTTAATCCCATATTCCCCTCATGTTTCTAATTTG------------ 561
consensus_13023#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 307
                           ** *         **    * *                                  

consensus_13023#0      TTTTTTGGGGTTTTTCAGTAATTGAAAAGGGAGAATCCGTATAAACAATAGTTGTGCCAT 1305
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      GTGTGATATTCCAAATCGGTTTGAATCCTGGAAAAAAAGGAATTGGCCCCAGCTTTCCAT 1365
consensus_13023#1      ------------------------------------------------------------
consensus_13023#2      ------------------------------------------------------------
                                                                                   

consensus_13023#0      TCAAAAAAAAAAAA 1379
consensus_13023#1      --------------
consensus_13023#2      --------------