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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1994 fasta sequence
[CGTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC-TGCCTCGAGA-TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTG-AAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG-CAGGGG-AGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATCCACATTGTCTAACCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCATTCCTGTGGACAGAAGTGAATGAAAATTTGGAGATCGATTTTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAANNAAAAAAAAGGGGCCCCCACCGGGGGGGAGCTCCAGTTTTTGTTCCTTTAAGGGGGGGTTAATTGCGCCCTTGGGGGAAAAAAGGGCAAAGTTGTTTCCTGGTGAAAATTGTTTCCGTTAAAATTCCACAAAAAAATAAAGCCGGAAAAAAAAAGGAAAACCCTGGGGGGCCTAAAGGGGGGGCTTACTCACATTAATTGGGTGGGCTCATTGCCCGTTTTTCAAAGGGGAAAACCGTCGGGCCCCTTGTCTTATAAATCGCCCAACCCCCGGGAAAGGGGGTTTTGGATTTTGGGGGTTTTTCCGTTTTCTCGTTAAAAAACTCGTGGGCTTGGAGTTTGGTTGGGGGGGAGGTTTAAATTTCTAAAGGGGGGAAAC]
[+] EMBL AK064053 [CGTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC TGCCTCGAGA TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTG AAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG CAGGGG AGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATCCACATTGTCTAACCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCATTCCTGTGGACAGAAGTGAATGAAAATTTGGAGA ]
[+] EMBL CF308289 [CGTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC TGCCTCGAGA TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGC ]
[+] EMBL AK101418 [ GTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC TGCCTCGAGA TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTG AAGAGTGGAATACTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG CAGGGG AGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATC ]
[+] EMBL C28308 [ CAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCNTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTNTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTNCACCGACGACCACANCGCCATC TTCCTCGAGA TCCTCGACAAGGGCGAGTTCCAGGTNTTCGG ]
[+] EMBL C26504 [ ATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCNTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTTCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTTGCCTCGAGATTCTTCGAC ]
[+] EMBL CB662634 [ CGCGAGGAGGCAGCGAGAGCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATC TGCCTCGAGA TCCTCGACAAGGGCGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTG AAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG CAGGGGAAGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATA ]
[+] EMBL AU100736 [ CTTACAGAGAAACTTGAAAGANTGGAATGCTAATGTTATTTCAAAGGAC AATCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTGCCAGGGG AGGTTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATCCACATTGTCTAACCGCCAAAaaa ]
[-] EMBL CB660314 [ ATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTG CAGGGG AGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATTTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATTTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTTTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTTTGAGGAGAAAGGTTGTTTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATTTACTGAAATGGAGTGGTTTATCCCCATTGTTTAACCGCCAAAGAGTAGCAGAAACCTGGTTGGGGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTTTAATGGGCTATGGGAGACTACATG ]
[+] EMBL CA765825 [ cgacgagaCAAGGGGGACCTAAAAGACT TGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCGACTGAAATGGAGTGGTCTAT CACATTGTCTAACCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCATTCCTGTGGACAGAAGTGAATGAAAATTTGGAGATCGATTTTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAANNAAAAAAAAGGGGCCCCCACCGGGGGGGAGCTCCAGTTTTTGTTCCTTTAAGGGGGGGTTAATTGCGCCCTTGGGGGAAAAAAGGGCAAAGTTGTTTCCTGGTGAAAATTGTTTCCGTTAAAATTCCACAAAAAAATAAAGCCGGAAAAAAAAAGGAAAACCCTGGGGGGCCTAAAGGGGGGGCTTACTCACATTAATTGGGTGGGCTCATTGCCCGTTTTTCAAAGGGGAAAACCGTCGGGCCCCTTGTCTTATAAATCGCCCAACCCCCGGGAAAGGGGGTTTTGGATTTTGGGGGTTTTTCCGTTTTCTCGTTAAAAAACTCGTGGGCTTGGAGTTTGGTTGGGGGGGAGGTTTAAATTTCTAAAGGGGGGAAAC]
consensusID : consensus_13040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1386 fasta sequence
[AGGCACCCCCTTCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACCAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCGGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTGCCTCGAGATCCTCGACAAGGGCGAGCTCCACGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGGTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTGAAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGACATGTGAGGAGAGATTGAAGGATGTGCAGGGGAGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAACCACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATATGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCTCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACTTAAAAGACTATGATTTCTGAGGTGAATTCCCTGTAGTTCCACAATGATCTTGTGTCTGTATTATAATAACTTTGTCTGACTTATGGCTAACATTTTGGTTCAACACGTTATCTTCTAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAACAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTCTGCTACTTGCAATATGCTGAAATGGAGTGGTCTATCCCCATGGTCTACTAT]
[+] EMBL CB660315 [AGGCACCCCCTTCTAGGGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCGGCTGACCAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCGGCGGTTCGAGATCGCGTGCTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCTCCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCTCCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTGCCTCGAGATCCTCGACAAGGGCGAGCTCCACGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGGTCCACGAGATCGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCACCATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAAGGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACCATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTGAAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATTGAGCCATCTATTCTACGGACATGTGAGGAGAGATTGAAGG ]
[-] EMBL CB662635 [ GAAGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTGTGAGATAGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTGCAGGGGAGGGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGAAACCACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGGTGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATATGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCTCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACTTAAAAGACTATGATTTCTGAGGTGAATTCCCTGTAGTTCCACAATGATCTTGTGTCTGTATTATAATAACTTTGTCTGACTTATGGCTAACATTTTGGTTCAACACGTTATCTTCTAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAACAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTCTGCTACTTGCAATATGCTGAAATGGAGTGGTCTATCCCCATGGTCTACTAT]
consensusID : consensus_13040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[AAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCCACTGAAATGGAGTGGTCTATCCACATTGCATCCCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTTT]
[-] EMBL CF308290 [AAGGCAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGAGCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCCTCCACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAAAAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGAATATTTGTGTAACCGCAATGTACGCTACTTGCAATCCACTGAAATGGAGTGGTCTATCCACATTGCATCCCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGTAAATCTGGTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTATGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13040#0 CGTCTTCTCCAACCCATCCAAACCAAAGCCGCGGCGGCGCGAGGAGGCAGCGAGAGCTAG 60
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 --------------------------------------------AGGCACCCCCTTCTAG 16
consensus_13040#0 GGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCG 120
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 GGTTTGGGGCGGCGGAGGGGAGATGTCGCGGACGCTGGTGCAGCCGGTGGGGCAGAAGCG 76
consensus_13040#0 GCTGACGAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCAGCGGTTCGAGATCGCGTG 180
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 GCTGACCAACGTGGCGGTGGTGCGGCTCCGTAAGCACGGGCGGCGGTTCGAGATCGCGTG 136
consensus_13040#0 CTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCT 240
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 CTTCCCGAACAAGGTGCTGTCATGGCGGACGCGGGTGGAGAAGGACATCGACGAGGTGCT 196
consensus_13040#0 CCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCT 300
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 CCAATCCCACACCGTCTACTCCAACGTCTCCAAGGGCGTCCTCGCCAAGTCCAAGGACCT 256
consensus_13040#0 CCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTGCCTCGAGATCCTCGACAAGGG 360
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 CCTCAAGGCCTTCTCCACCGACGACCACACCGCCATCTGCCTCGAGATCCTCGACAAGGG 316
consensus_13040#0 CGAGCTCCAGGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGTTCCACGAGAT 420
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 CGAGCTCCACGTCTCCGGCAAGGAGCGCGAGGCCCAGCTCTCCTCCCAGGTCCACGAGAT 376
consensus_13040#0 CGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCAC 480
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 CGCCACCATCGTCATGGACAAGACCATCAACCCGGAGACACGCCGCCCCTACACCATCAC 436
consensus_13040#0 CATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAA 540
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 CATGATCGAGCGCCTCATGCACGACGTCCACTTCGCCGTCGACCCCAACCTCACTTCCAA 496
consensus_13040#0 GGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACC 600
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 GGAGCAGGCACTGAAAGTTATTAAGAAGCTAACAGAGCATTTCCCCATAAAGCGTGCACC 556
consensus_13040#0 ATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTGA 660
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 ATTGAGGGTGCGCTTCACTGCACCAAAGTCAAAATTTGCAAGCCTTACAGAGAAGCTTGA 616
consensus_13040#0 AGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTG 720
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 AGAGTGGAATGCTAATGTTATTTCAAAGGACGAGTCTGGTAGCCAGCCCTCTGTTGTGTG 676
consensus_13040#0 TGAGATTGAGCCATCTATTCTACGGTCATGTGAGGAGAGATTGAAGGATGTGCAGGGGAG 780
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 TGAGATTGAGCCATCTATTCTACGGACATGTGAGGAGAGATTGAAGGATGTGCAGGGGAG 736
consensus_13040#0 GGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGA 840
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 GGTGGAAGTACTCTCAGTGTCAGCGCACGCAGAAGGTGGCTCTTCTGTGGATCAATATGA 796
consensus_13040#0 AAACACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGG 900
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 AACCACTGAAGAATCTCAATCAGTGCCTGCAGTGGAGATTGATCCTGTTGCTCGGATAGG 856
consensus_13040#0 TGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGG 960
consensus_13040#2 --------------------------------------------------------AAGG 4
consensus_13040#1 TGAGGCCATGCAGAAACAGTCCATCTCAAGTGAGCCAGAAAATCCTGGGCAGGGACAAGG 916
****
consensus_13040#0 CAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGA 1020
consensus_13040#2 CAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGA 64
consensus_13040#1 CAAGCAGCAGAGAAGATGCAAAGAATGTGACGTGCTTGTGGAGGACAAGTTGTATAGGGA 976
************************************************************
consensus_13040#0 GCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTC-CTC 1079
consensus_13040#2 GCATTGCAAATCTGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTC-CTC 123
consensus_13040#1 GCATTGCAAATATGGGTGGCACAAGCACAACTACACACGCCACAAGAACGGCCTTCTCTC 1036
*********** ******************************************** ***
consensus_13040#0 CACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAA 1139
consensus_13040#2 CACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACCTAA 183
consensus_13040#1 CACTCAGCCAGGAGGAGTGCTTGGTGGAAATGGAATTAGCCGACTCCAAGAGGGACTTAA 1096
******************************************************** ***
consensus_13040#0 AAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTAC-ATGGAGATGCAG 1198
consensus_13040#2 AAGACTATGATTTCTGAGGCTGATATGGTAAACATTCCGTGTGGTAC-ATGGAGATGCAG 242
consensus_13040#1 AAGACTATGATTTCTGAGG-TGA----------ATTCCCTGTAGTTCCACAATGATCTTG 1145
******************* *** ***** *** ** * * *** *
consensus_13040#0 TGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGA 1258
consensus_13040#2 TGTTTTTGTCTGAGGAGAAAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGGAAGGGA 302
consensus_13040#1 TGTCTGTATT---ATAATAACTTTGTCTGACTTATGGCTAACATTTTGGTTCAACACGTT 1202
*** * * * * ** ******* * *** * * * * *
consensus_13040#0 ATATT-TGTGTAACCGCAATGTACGCTACTTGCAATCTACTGAAATGGAGTGGTCTATCC 1317
consensus_13040#2 ATATT-TGTGTAACCGCAATGTACGCTACTTGCAATCCACTGAAATGGAGTGGTCTATCC 361
consensus_13040#1 ATCTTCTAGGCTGATATGGTAAACATTCCGTGTGGTACATGGAGATGCAGTGTTTT---- 1258
** ** * * * ** * * ** * * ** *** **** * *
consensus_13040#0 ACATTGTCTAACCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGT 1377
consensus_13040#2 ACATTGCATC-CCGCCAAAGAGTAGCAGAAACCTGGTTGTTGCTGTATAGCTGGGCCAGT 420
consensus_13040#1 ----TGT-------CTGAGGAGAACAGGTTGTCTGTTTGATGCTGTATAGGGAAGCAGGG 1307
** * * *** * * *** *** ********** ** *
consensus_13040#0 AA------ATCTG-GTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTA 1430
consensus_13040#2 AA------ATCTG-GTGGCAGTTTTGAATGTTGCTTATTCTGTAATGGGATGCTATGCTA 473
consensus_13040#1 AAGGGAATATTTGTGTAACCGCAATGTCTGCTACTTGCAATATGCTGAAATGGAGTGGTC 1367
** ** ** ** * * ** ** * *** * * ** *** ** *
consensus_13040#0 TGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCATTCCTGTGGACAGAA 1490
consensus_13040#2 TGCTATGTGAGACTACATGTTAGTATATCATGTTTCTTGCTCTCAA------AAAAAAAA 527
consensus_13040#1 TATCCCCATGGTCTAC-TAT---------------------------------------- 1386
* * **** * *
consensus_13040#0 GTGAATGAAAATTTGGAGATCGATTTTGCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAA 1550
consensus_13040#2 AAAAAAAAACACTGTCATGCCGTTTT---------------------------------- 553
consensus_13040#1 ------------------------------------------------------------
consensus_13040#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA 1610
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 ------------------------------------------------------------
consensus_13040#0 AAAAANNAAAAAAAAGGGGCCCCCACCGGGGGGGAGCTCCAGTTTTTGTTCCTTTAAGGG 1670
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 ------------------------------------------------------------
consensus_13040#0 GGGGTTAATTGCGCCCTTGGGGGAAAAAAGGGCAAAGTTGTTTCCTGGTGAAAATTGTTT 1730
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 ------------------------------------------------------------
consensus_13040#0 CCGTTAAAATTCCACAAAAAAATAAAGCCGGAAAAAAAAAGGAAAACCCTGGGGGGCCTA 1790
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 ------------------------------------------------------------
consensus_13040#0 AAGGGGGGGCTTACTCACATTAATTGGGTGGGCTCATTGCCCGTTTTTCAAAGGGGAAAA 1850
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 ------------------------------------------------------------
consensus_13040#0 CCGTCGGGCCCCTTGTCTTATAAATCGCCCAACCCCCGGGAAAGGGGGTTTTGGATTTTG 1910
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 ------------------------------------------------------------
consensus_13040#0 GGGGTTTTTCCGTTTTCTCGTTAAAAAACTCGTGGGCTTGGAGTTTGGTTGGGGGGGAGG 1970
consensus_13040#2 ------------------------------------------------------------
consensus_13040#1 ------------------------------------------------------------
consensus_13040#0 TTTAAATTTCTAAAGGGGGGAAAC 1994
consensus_13040#2 ------------------------
consensus_13040#1 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||