Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13047 cluster # 13047       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13047#0 length = 637 sequences # 11  
consensus_13047#1 length = 344 sequences # 1  

consensusID : consensus_13047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 637
fasta sequence
                              [TTCTCCTTGCCTTT-ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA-G-CAACGGTTCAAAGGCC-GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC-GCGA-GGCA-TA-TC-A-GAATGCA-GCG-GC-AGCTGGAGAC-CTCGAAGCAACAA-GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA]

[+] EMBL CF308599             [TTCTCCTTGCCTTT ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAaa                                               ]
[+] EMBL AK062656             [       TGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATAT                       ]
[+] EMBL CB681936             [                             ATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATAT                       ]
[+] EMBL AU064081             [                                        CGAAGGAGCACACAAGANAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTNATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GNAT TA TC A GANTGCA GCG GC AGTTGNNGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAG AACAG CCAGCAACTTTTGATTTtc                                                                                                                                                            ]
[+] EMBL AU064901             [                                        CGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGNTCAAGAGAACGCCTCATCACCAGCTTCCTCCTCGCAAGCCAACCTGCGCATCAAGTTGAGCC GCGA  GCA TA TCAA GAATTCA GCG GC ANTTGAGGAC CTCGAAGCAACA                                                                                                                                                                                                                                                ]
[+] EMBL AU094232             [                                         GAAGGAGCACCCAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA]
[-] EMBL CF308598             [                                           AGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAaaa                                              ]
[+] EMBL OSS15558A            [                                             GAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTNCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGNGCATCAAGCT                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU183020             [                                                                                                                                                                                                            CTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA]
[+] EMBL AU163113             [                                                                                                                                                                                                                                                    AACANGNCAACGGTTCAAAGGCCTGCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAA                                                  ]
[-] EMBL AU162131             [                                                                                                                                                                                                                                                                                                                                                           ctTGAGCCTGCGANTGCATTATTC ATGAATGCATGCGTGCTAGCTGGAGACNCTCGAAGCAACAATGGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAa                                                ]


>consensus_13047#0 TTCTCCTTGCCTTTATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAG ACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATG GAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATT TCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCT GCAAACAGCAACGGTTCAAAGGCCGCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACG CCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCCGCGAGGCAT ATCAGAATGCAGCGGCAGCTGGAGACCTCGAAGCAACAAGGGGACAGGTGGACTAAGATC AGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTG CAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAAC CATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAATTGTCATGATAA ATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA



consensusID : consensus_13047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence
                              [TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAANTAAGTCGTTGGTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGCCATGAGCGCNCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGAAACTGCAAACAGCAACGGTTCAAAGGCGCGGTTGAGNCTCTCAAGCCAANCTCAAGAGACCGCTCATCACCAGTCCTCTNGAAGCAACTGCGATAAGTGAGCGCGNGAT]

[-] EMBL AU032917             [TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAANTAAGTCGTTGGTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGCCATGAGCGCNCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGAAACTGCAAACAGCAACGGTTCAAAGGCGCGGTTGAGNCTCTCAAGCCAANCTCAAGAGACCGCTCATCACCAGTCCTCTNGAAGCAACTGCGATAAGTGAGCGCGNGAT]


>consensus_13047#1 TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGA GAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAANTAAGTCGTTGGTTCAA TGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGA TTTCAAAGGCCATGAGCGCNCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGAAACTG CAAACAGCAACGGTTCAAAGGCGCGGTTGAGNCTCTCAAGCCAANCTCAAGAGACCGCTC ATCACCAGTCCTCTNGAAGCAACTGCGATAAGTGAGCGCGNGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13047#0      ---TTCTCCTTGCCTTT-ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGA 56
consensus_13047#1      TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGA 60
                          *** ********** ******************************************

consensus_13047#0      GAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTC 116
consensus_13047#1      GAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAAN-TAAGTCGTTGG-TTC 118
                       ************************************** ****  *********** ***

consensus_13047#0      AATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCT 176
consensus_13047#1      AATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCT 178
                       ************************************************************

consensus_13047#0      GATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCA 236
consensus_13047#1      GATTTCAAAGG-CCATGAGCGCNC-TACTTTGATTCCGCAGACTGGGTTCTTGGCAAG-A 235
                       *********** ********** * ********************************* *

consensus_13047#0      AGCTGCAAACAGCAACGGTTCAAAGGCCGCGGTTGAGACTCTCAAGCCCAAGCTCAAGAG 296
consensus_13047#1      AACTGCAAACAGCAACGGTTCAAAGGC-GCGGTTGAGNCTCTCAAGCC-AANCTCAAGAG 293
                       * ************************* ********* ********** ** ********

consensus_13047#0      AACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCCGCGAG 356
consensus_13047#1      ACCGC-TCATCACCAG-----TCCTCTNGAAGCAACT---GCGATAAG-TGAGC-GCGNG 342
                       * *** **********     *****   *  ****    **   *** ***** *** *

consensus_13047#0      GCATATCAGAATGCAGCGGCAGCTGGAGACCTCGAAGCAACAAGGGGACAGGTGGACTAA 416
consensus_13047#1      AT---------------------------------------------------------- 344
                                                                                   

consensus_13047#0      GATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCA 476
consensus_13047#1      ------------------------------------------------------------
                                                                                   

consensus_13047#0      TTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGAT 536
consensus_13047#1      ------------------------------------------------------------
                                                                                   

consensus_13047#0      TAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAATTGTCATG 596
consensus_13047#1      ------------------------------------------------------------
                                                                                   

consensus_13047#0      ATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA 637
consensus_13047#1      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)