These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 637 fasta sequence [TTCTCCTTGCCTTT-ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA-G-CAACGGTTCAAAGGCC-GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC-GCGA-GGCA-TA-TC-A-GAATGCA-GCG-GC-AGCTGGAGAC-CTCGAAGCAACAA-GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA] [+] EMBL CF308599 [TTCTCCTTGCCTTT ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAaa ] [+] EMBL AK062656 [ TGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATAT ] [+] EMBL CB681936 [ ATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATAT ] [+] EMBL AU064081 [ CGAAGGAGCACACAAGANAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTNATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GNAT TA TC A GANTGCA GCG GC AGTTGNNGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAG AACAG CCAGCAACTTTTGATTTtc ] [+] EMBL AU064901 [ CGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGNTCAAGAGAACGCCTCATCACCAGCTTCCTCCTCGCAAGCCAACCTGCGCATCAAGTTGAGCC GCGA GCA TA TCAA GAATTCA GCG GC ANTTGAGGAC CTCGAAGCAACA ] [+] EMBL AU094232 [ GAAGGAGCACCCAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA] [-] EMBL CF308598 [ AGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAaaa ] [+] EMBL OSS15558A [ GAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTNCACCAAAGAAGCCTCTGATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGNGCATCAAGCT ] [+] EMBL AU183020 [ CTTTGATTCCGCAGACTGGGTTCTTGGCAAGCAAGCTGCAAACA G CAACGGTTCAAAGGCC GCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAACATTGTCATGATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA] [+] EMBL AU163113 [ AACANGNCAACGGTTCAAAGGCCTGCGGTTGAGACTCTCAAGCCCAAGCTCAAGAGAACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCC GCGA GGCA TA TC A GAATGCA GCG GC AGCTGGAGAC CTCGAAGCAACAA GGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAA ] [-] EMBL AU162131 [ ctTGAGCCTGCGANTGCATTATTC ATGAATGCATGCGTGCTAGCTGGAGACNCTCGAAGCAACAATGGGGACAGGTGGACTAAGATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCATTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGATTAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAAa ] consensusID : consensus_13047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAANTAAGTCGTTGGTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGCCATGAGCGCNCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGAAACTGCAAACAGCAACGGTTCAAAGGCGCGGTTGAGNCTCTCAAGCCAANCTCAAGAGACCGCTCATCACCAGTCCTCTNGAAGCAACTGCGATAAGTGAGCGCGNGAT] [-] EMBL AU032917 [TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGAGAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAANTAAGTCGTTGGTTCAATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCTGATTTCAAAGGCCATGAGCGCNCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGAAACTGCAAACAGCAACGGTTCAAAGGCGCGGTTGAGNCTCTCAAGCCAANCTCAAGAGACCGCTCATCACCAGTCCTCTNGAAGCAACTGCGATAAGTGAGCGCGNGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13047#0 ---TTCTCCTTGCCTTT-ATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGA 56 consensus_13047#1 TTTTTCCCCTTGCCTTTCATAACCTCCTCTCCATCTTCCCTGACGAAGGAGCACACAAGA 60 *** ********** ****************************************** consensus_13047#0 GAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGATGAAGCTAAGTCGTTGGCTTC 116 consensus_13047#1 GAAGACAGAGAGAGGAGTACAGGAGATGGCAGGCTGTGNTGAAN-TAAGTCGTTGG-TTC 118 ************************************** **** *********** *** consensus_13047#0 AATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCT 176 consensus_13047#1 AATGGAGGAAGAGGCGTGCATTGAGAAGAAGTATGGAGGGATTGCACCAAAGAAGCCTCT 178 ************************************************************ consensus_13047#0 GATTTCAAAGGACCATGAGCGCGCCTACTTTGATTCCGCAGACTGGGTTCTTGGCAAGCA 236 consensus_13047#1 GATTTCAAAGG-CCATGAGCGCNC-TACTTTGATTCCGCAGACTGGGTTCTTGGCAAG-A 235 *********** ********** * ********************************* * consensus_13047#0 AGCTGCAAACAGCAACGGTTCAAAGGCCGCGGTTGAGACTCTCAAGCCCAAGCTCAAGAG 296 consensus_13047#1 AACTGCAAACAGCAACGGTTCAAAGGC-GCGGTTGAGNCTCTCAAGCC-AANCTCAAGAG 293 * ************************* ********* ********** ** ******** consensus_13047#0 AACGCCTCATCACCAGCTCCCTCCTCGCAAGCCAACCTGCGCATCAAGCTGAGCCGCGAG 356 consensus_13047#1 ACCGC-TCATCACCAG-----TCCTCTNGAAGCAACT---GCGATAAG-TGAGC-GCGNG 342 * *** ********** ***** * **** ** *** ***** *** * consensus_13047#0 GCATATCAGAATGCAGCGGCAGCTGGAGACCTCGAAGCAACAAGGGGACAGGTGGACTAA 416 consensus_13047#1 AT---------------------------------------------------------- 344 consensus_13047#0 GATCAGTGTTGTAGCCTGTCCTAAATCGTAGGTGGAAAGAAACAGCCCAGCAACTCTGCA 476 consensus_13047#1 ------------------------------------------------------------ consensus_13047#0 TTTGCAGATTAGCCTCTCTGGCAGTTGCAGCCTCTATGTCTATCAGAATTCAGAACGGAT 536 consensus_13047#1 ------------------------------------------------------------ consensus_13047#0 TAACCATTGCTCAGTGATATCTCCATTATCTAAAAAAAGGGATTAACGAAAATTGTCATG 596 consensus_13047#1 ------------------------------------------------------------ consensus_13047#0 ATAAATTGATAATGATATCACTTGGTACAAAAAAAAAAAAA 637 consensus_13047#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||