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Oryza sativa
cluster # 13050 cluster # 13050       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13050#0 length = 1352 sequences # 5  
consensus_13050#1 length = 1089 sequences # 2  
consensus_13050#2 length = 789 sequences # 4  
consensus_13050#3 length = 365 sequences # 1  

consensusID : consensus_13050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1352
fasta sequence
                              [TNTTCCAGATCGATCAACCAACCCTCACCCTCATCCGCCGCCTCCTCTCCTCTCCTCTCCTCGTCGGCGCCGCCGCCCCCGCCGCCGCCGGAAGAAGAGAAGAGAAGAAGGCGATCATCCATGGAGCGAGAGGAGGATGCTTCTTCTACCCCTCTCCCCGGCGGCGCCGATGACTACATCCGCGACTCCATCCACGACTCGCTCGGCCTCCCCGTCTCCGACCGCTCCCTCCGCCTCAAGCTGCTCGCCTCCGAGGACCATCGCCGCCGCCTCCAGGACCACGTCTTCGTCCTCGAGGAGGACCTCCGCGCAGCCGCACGCCGCATCGAACAGCTCAAGGCGGAGTCCACCATGAACGCCGCGGGCCTGCGCCGCTGCATCGAGGAGAAGGAGACCATGGTCTCCGCCTACAACGACCTCTCCTCCCACTCCACCAAGCTTGAGCGGGAGTGCACCCTCTACGAGCGGGACCTCGAACGCGCCATGGAGTCCTGCGACGACCTCGCTAAGGAGAACGACGAAATGCGCGCACGCCTCAATGACCGCACCACCCTTTCTGCATTGACCACTCAAGTTGAAGCTCTGCACAAGGACAAGGAAAACCTAAGGATCAATCTTAATAAAGCAGAGGAGGAGGTCAAGCTGCTATTCGAGGAAAACAAGATTCTTGACGAAGAGAACAAAAAACTGTTGGCTCTGTTGGAGAAAGAGCGACAGCACCGGTCTGAGAGAAAGCATTCCTCCAGTGCGTCCACCACCAAGCACAAGCGCAAATCATCAAGTTTGAAGGATACGAGCCCAGTGGGTCGGACCATCGATTTCAATGGTGCAGATTCATCATCGAGGCACCCGCTTTCACCATTGCCACCAAACTCCCCAGACTACAGGGCGCACAAGAAATGAAAATGAAAGCGACCATCATCCGCTGCTTATGGCAGGCGTGCTGCTCATCTGATCCTGCTAATATAAAAACTTGCTGCTGGGTTCTACTCCAGTGGATAGAACGAAGAACCCCCCAAGGCATGACAAAGCCTACCTGAATGCTACTCGTTCTGGTTGTAGAGTCATCCTTTGGTCAGAAAACAACTTTTAACTTACTGTACCTTCCTAAGGCAAGTACTAGTAATAGCTTTTTCTTGGCCTGTGACTGGTCTCTCTGTTCATTTTCATGAATGTAACGGCTTACTCTTCTTCTTATTATTAATTCTTGGTAGAGTATTAGTATTATGGAGCTACGTATGTGATGTGCTGGTCTCTCCTCTGACCTCTAATCTGCTTGTCATGTATGAAATGAATGCCTCATCTCGATCATCTGGTTATCAATCAATTGATGAAAGCATTTATCTAAAAAA]

[+] EMBL CF327292             [  TTCCAGATCGATCAACCAACCCTCACCCTCATCCGCCGCCTCCTCTCCTCTCCTCTCCTCGTCGGCGCCGCCGCCCCCGCCGCCGCCGGAAGAAGAGAAGAGAAGAAGGCGATCATCCATGGAGCGAGAGGAGGATGCTTCTTCTACCCCTCTCCCCGGCGGCGCCGATGACTACATCCGCGACTCCATCCACGACTCGCTCGGCCTCCCCGTCTCCGACCGCTCCCTCCGCCTCAAGCTGCTCGCCTCCGAGGACCATCGCCGCCGCCTCCAGGACCACGTCTTCGTCCTCGAGGAGGACCTCCGCGCAGCCGCACGCCGCATCGAACAGCTCAAGGCGGAGTCCACCATGAACGCCGCGGGCCTGCGCCGCTGCATCGAGGAGAAGGAGACCATGGTCTCCGCCTACAACGACCTCTCCTCCCACTCCACCAAGCTTGAGCGGGAGTGCACCCTCTACGAGCGGGACCTCGAACGCGCCATGGAGTCCTGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C74497               [tnncnanGATCGATCAACCAACCCTCACCCTCATCCGCCGCCTCCTCTCCTCTCCTCTCCTCGTCGGCGCCG CGCCCCCGCCGCCGCCGGAAGAAGAGAAGAGAAGAAGGCGATCATCCATGGAGCGAGAGGAGGATGCTTCTTCTACCCCTCTCCCCGGCGGCG CGATGACTACATCCGCGACTTCATCCACGACTCGCTCGGCNTCCCCGTNTCCGAACGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK122003             [                                                                                                                                                                                                                                                                                                                  CGCGCAGCCGCACGCCGCATCGAACAGCTCAAGGCGGAGTCCACCATGAACGCCGCGGGCCTGCGCCGCTGCATCGAGGAGAAGGAGACCATGGTCTCCGCCTACAACGACCTCTCCTCCCACTCCACCAAGCTTGAGCGGGAGTGCACCCTCTACGAGCGGGACCTCGAACGCGCCATGGAGTCCTGCGACGACCTCGCTAAGGAGAACGACGAAATGCGCGCACGCCTCAATGACCGCACCACCCTTTCTGCATTGACCACTCAAGTTGAAGCTCTGCACAAGGACAAGGAAAACCTAAGGATCAATCTTAATAAAGCAGAGGAGGAGGTCAAGCTGCTATTCGAGGAAAACAAGATTCTTGACGAAGAGAACAAAAAACTGTTGGCTCTGTTGGAGAAAGAGCGACAGCACCGGTCTGAGAGAAAGCATTCCTCCAGTGCGTCCACCACCAAGCACAAGCGCAAATCATCAAGTTTGAAGGATACGAGCCCAGTGGGTCGGACCATCGATTTCAATGGTGCAGATTCATCATCGAGGCACCCGCTTTCACCATTGCCACCAAACTCCCCAGACTACAGGGCGCACAAGAAATGAAAATGAAAGCGACCATCATCCGCTGCTTATGGCAGGCGTGCTGCTCATCTGATCCTGCTAATATAAAAACTTGCTGCTGGGTTCTACTCCAGTGGATAGAACGAAGAACCCCCCAAGGCATGACAAAGCCTACCTGAATGCTACTCGTTCTGGTTGTAGAGTCATCCTTTGGTCAGAAAACAACTTTTAACTTACTGTACCTTCCTAAGGCAAGTACTAGTAATAGCTTTTTCTTGGCCTGTGACTGGTCTCTCTGTTCATTTTCATGAATGTAACGGCTTACTCTTCTTCTTATTATTAATTCTTGGTAGAGTATTAGTATTATGGAGCTACGTATGTGATGTGCTGGTCTCTCCTCTGACCTCTAATCTGCTTGTCATGTATGAAATGAATGCCTCATCTCGATCATCTG                                     ]
[-] EMBL CF327291             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGAGGAGGTCAAGCTGCTATTCGAGGAAAACAAGATTCTTGACGAAGAGAACAAAAAACTGTTGGCTCTGTTGGAGAAAGAGCGACAGCACCGGTCTGAGAGAAAGCATTCCTCCAGTGCGTCCACCACCAAGCACAAGCGCAAATCATCAAGTTTGAAGGATACGAGCCCAGTGGGTCGGACCATCGATTTCAATGGTGCAGATTCATCATCGAGGCACCCGCTTTCACCATTGCCACCAAACTCCCCAGACTACAGGGCGCACAAGAAATGAAAATGAAAGCGACCATCATCCGCTGCTTATGGCAGGCGTGCTGCTCATCTGATCCTGCTAATATAAAAACTTGCTGCTGGGTTCTACTCCAGTGGATAGAACGAAGAACCCCCCAAGGCATGACAAAGCCTACCTGAATGCTACTCGATCTGGTTGTAGAGTCATCCTTTGGTCAGAAAACAACTTTTAACTTACTGTACCTTCCTAAGGCAAGTACTAGTAATAGCTTTTTCTTGGCCTGTGACTGGTCTCTCTGTTCATTTTCATGAATGTAACGGCTTACTCTTCTTCTTATTAaaaaaa                                                                                                                                                  ]
[+] EMBL AU101442             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTCAGAAAACAACTTTTAACTTACTGTACCTTCCTAAGGCAAGTACTAGTAATAGCTTNTTNTTGGCCTGTGACTGGTCTCTCTGTTCATTTTCATGAATGTAACGGCTTNCTCTTCTTCTTATTATTAATTCTTGGTAGAGTATTAGTATTATGGAGCTACGTATGTGATGTGCTGGTCTCTCCTCTGACCTCTAATCTGCTTGTCATGTATGAAATGAATGCCTCATCTCGATCATCTGGTTATCAATCAATTGATGAAAGCATTTATCTAAAAAA]


>consensus_13050#0 TNTTCCAGATCGATCAACCAACCCTCACCCTCATCCGCCGCCTCCTCTCCTCTCCTCTCC TCGTCGGCGCCGCCGCCCCCGCCGCCGCCGGAAGAAGAGAAGAGAAGAAGGCGATCATCC ATGGAGCGAGAGGAGGATGCTTCTTCTACCCCTCTCCCCGGCGGCGCCGATGACTACATC CGCGACTCCATCCACGACTCGCTCGGCCTCCCCGTCTCCGACCGCTCCCTCCGCCTCAAG CTGCTCGCCTCCGAGGACCATCGCCGCCGCCTCCAGGACCACGTCTTCGTCCTCGAGGAG GACCTCCGCGCAGCCGCACGCCGCATCGAACAGCTCAAGGCGGAGTCCACCATGAACGCC GCGGGCCTGCGCCGCTGCATCGAGGAGAAGGAGACCATGGTCTCCGCCTACAACGACCTC TCCTCCCACTCCACCAAGCTTGAGCGGGAGTGCACCCTCTACGAGCGGGACCTCGAACGC GCCATGGAGTCCTGCGACGACCTCGCTAAGGAGAACGACGAAATGCGCGCACGCCTCAAT GACCGCACCACCCTTTCTGCATTGACCACTCAAGTTGAAGCTCTGCACAAGGACAAGGAA AACCTAAGGATCAATCTTAATAAAGCAGAGGAGGAGGTCAAGCTGCTATTCGAGGAAAAC AAGATTCTTGACGAAGAGAACAAAAAACTGTTGGCTCTGTTGGAGAAAGAGCGACAGCAC CGGTCTGAGAGAAAGCATTCCTCCAGTGCGTCCACCACCAAGCACAAGCGCAAATCATCA AGTTTGAAGGATACGAGCCCAGTGGGTCGGACCATCGATTTCAATGGTGCAGATTCATCA TCGAGGCACCCGCTTTCACCATTGCCACCAAACTCCCCAGACTACAGGGCGCACAAGAAA TGAAAATGAAAGCGACCATCATCCGCTGCTTATGGCAGGCGTGCTGCTCATCTGATCCTG CTAATATAAAAACTTGCTGCTGGGTTCTACTCCAGTGGATAGAACGAAGAACCCCCCAAG GCATGACAAAGCCTACCTGAATGCTACTCGTTCTGGTTGTAGAGTCATCCTTTGGTCAGA AAACAACTTTTAACTTACTGTACCTTCCTAAGGCAAGTACTAGTAATAGCTTTTTCTTGG CCTGTGACTGGTCTCTCTGTTCATTTTCATGAATGTAACGGCTTACTCTTCTTCTTATTA TTAATTCTTGGTAGAGTATTAGTATTATGGAGCTACGTATGTGATGTGCTGGTCTCTCCT CTGACCTCTAATCTGCTTGTCATGTATGAAATGAATGCCTCATCTCGATCATCTGGTTAT CAATCAATTGATGAAAGCATTTATCTAAAAAA



consensusID : consensus_13050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1089
fasta sequence
                              [TATATCAATCGGCATTGGAGTGAAAATAAAAGAAGCCAACTCGATCAATCGGCTAATCGAGTCAATTGCTCCCAATCCCATTGCCCCTAATTCCCAAAATACATGAATAACAAAATTACTCAATTGCAATCCCAAACCAAAATAAAAAATCTCCACAAAATCAACATCCCAAATCAAACCGGCGTCGTACTGTGGTTACTATATCAACATTCCAAATCACAAAATCCTCAAAATATTCACAAATAAAAAAATCAAACCACCGTCGGCTCCACGTCGGGGAGGTGAGGGGCAGCCAGGGAGGCGGGGAGTTGCTGCCAACACCAGGGGAGGGAAGCAGCTGTCGGCCGCCACTCCGGGGAGGGGGGAGCAGCAGCCACCGGATAACTGCTAGAGGAGCCGCTGCCCTCGAATCCGCCGCAGGAGGAAGCTGCTGCCACCCGATCCACTCTCAGCCAGCGCCACCGCCACCGGATCCACACGCGGTCGCCGTCCCCGCTGTCAGATCCACCGTGGGAGGGAGGAGAGAGGGGGCAGAGGGAGCCGTCGCCGCTGGATCCGTCCTCATCCGCCGCCGGATCCACCCGCGGCCGCCGCCGACGCCGCCATCGATGCCGGATCTACCGCGGGAGGGAGGCGAGATGGAGAGGAGGAGATGGCGAGCGAGGCGAATCCATCCGTGGCTCACTCGGCCTCCCCGTCTCCGACCACTCTCTCCGCCTCAAGCTGCTCGCCTCCGAATACCACCACCGCCTCCACGTCTTCGCCCTCCAGGAGGACCTCCATGGTGATGGCATCGTGGATCTGGCCGGCAACTCGAGGGAAAAAGAAGGCCTGCGACGATGTTGTGGATAGGCCGTCGACGATGTGGTGGATCGGCCGGCAACGTTGAGGGAGAGGAATAAACGGAGAAAGTGAGGAGGGAGAGAGGCGGAGAAAGACGGGAAGAGAGAGGAAAAAAGAGGGAGCTGCAGTCTAGATATTTTTACTGGTAGTACATAGTGTACGTGCTTGAGACTTTAGATAATTACAGTCAAGTGGCATTGTGCTCTATATTGTGGTAACCACAAGATTGAATTTCGCTGAAAACAA]

[-] EMBL AK063816             [TATATCAATCGGCATTGGAGTGAAAATAAAAGAAGCCAACTCGATCAATCGGCTAATCGAGTCAATTGCTCCCAATCCCATTGCCCCTAATTCCCAAAATACATGAATAACAAAATTACTCAATTGCAATCCCAAACCAAAATAAAAAATCTCCACAAAATCAACATCCCAAATCAAACCGGCGTCGTACTGTGGTTACTATATCAACATTCCAAATCACAAAATCCTCAAAATATTCACAAATAAAAAAATCAAACCACCGTCGGCTCCACGTCGGGGAGGTGAGGGGCAGCCAGGGAGGCGGGGAGTTGCTGCCAACACCAGGGGAGGGAAGCAGCTGTCGGCCGCCACTCCGGGGAGGGGGGAGCAGCAGCCACCGGATAACTGCTAGAGGAGCCGCTGCCCTCGAATCCGCCGCAGGAGGAAGCTGCTGCCACCCGATCCACTCTCAGCCAGCGCCACCGCCACCGGATCCACACGCGGTCGCCGTCCCCGCTGTCAGATCCACCGTGGGAGGGAGGAGAGAGGGGGCAGAGGGAGCCGTCGCCGCTGGATCCGTCCTCATCCGCCGCCGGATCCACCCGCGGCCGCCGCCGACGCCGCCATCGATGCCGGATCTACCGCGGGAGGGAGGCGAGATGGAGAGGAGGAGATGGCGAGCGAGGCGAATCCATCCGTGGCTCACTCGGCCTCCCCGTCTCCGACCACTCTCTCCGCCTCAAGCTGCTCGCCTCCGAATACCACCACCGCCTCCACGTCTTCGCCCTCCAGGAGGACCTCCATGGTGATGGCATCGTGGATCTGGCCGGCAACTCGAGGGAAAAAGAAGGCCTGCGACGATGTTGTGGATAGGCCGTCGACGATGTGGTGGATCGGCCGGCAACGTTGAGGGAGAGGAATAAACGGAGAAAGTGAGGAGGGAGAGAGGCGGAGAAAGACGGGAAGAGAGAGGAAAAAAGA                                                                                                                                 ]
[+] EMBL AK107163             [                                                                                                                                                                                                                                            TCACAAATAAAAAAATCAAACCACCGTCGGCTCCACGTCGGGGAGGTGAGGGGCAGCCAGGGAGGCGGGGAGTTGCTGCCAACACCAGGGGAGGGAAGCAGCTGTCGGCCGCCACTCCGGGGAGGGGGGAGCAGCAGCCACCGGATAACTGCTAGAGGAGCCGCTGCCCTCGAATCCGCCGCAGGAGGAAGCTGCTGCCACCCGATCCACTCTCAGCCAGCGCCACCGCCACCGGATCCACACGCGGTCGCCGTCCCCGCTGTCAGATCCACCGTGGGAGGGAGGAGAGAGGGGGCAGAGGGAGCCGTCGCCGCTGGATCCGTCCTCATCCGCCGCCGGATCCACCCGCGGCCGCCGCCGACGCCGCCATCGATGCCGGATCTACCGCGGGAGGGAGGCGAGATGGAGAGGAGGAGATGGCGAGCGAGGCGAATCCATCCGTGGCTCACTCGGCCTCCCCGTCTCCGACCACTCTCTCCGCCTCAAGCTGCTCGCCTCCGAATACCACCACCGCCTCCACGTCTTCGCCCTCCAGGAGGACCTCCATGGTGATGGCATCGTGGATCTGGCCGGCAACTCGAGGGAAAAAGAAGGCCTGCGACGATGTTGTGGATAGGCCGTCGACGATGTGGTGGATCGGCCGGCAACGTTGAGGGAGAGGAATAAACGGAGAAAGTGAGGAGGGAGAGAGGCGGAGAAAGACGGGAAGAGAGAGGAAAAAAGAGGGAGCTGCAGTCTAGATATTTTTACTGGTAGTACATAGTGTACGTGCTTGAGACTTTAGATAATTACAGTCAAGTGGCATTGTGCTCTATATTGTGGTAACCACAAGATTGAATTTCGCTGAAAACAA]


>consensus_13050#1 TATATCAATCGGCATTGGAGTGAAAATAAAAGAAGCCAACTCGATCAATCGGCTAATCGA GTCAATTGCTCCCAATCCCATTGCCCCTAATTCCCAAAATACATGAATAACAAAATTACT CAATTGCAATCCCAAACCAAAATAAAAAATCTCCACAAAATCAACATCCCAAATCAAACC GGCGTCGTACTGTGGTTACTATATCAACATTCCAAATCACAAAATCCTCAAAATATTCAC AAATAAAAAAATCAAACCACCGTCGGCTCCACGTCGGGGAGGTGAGGGGCAGCCAGGGAG GCGGGGAGTTGCTGCCAACACCAGGGGAGGGAAGCAGCTGTCGGCCGCCACTCCGGGGAG GGGGGAGCAGCAGCCACCGGATAACTGCTAGAGGAGCCGCTGCCCTCGAATCCGCCGCAG GAGGAAGCTGCTGCCACCCGATCCACTCTCAGCCAGCGCCACCGCCACCGGATCCACACG CGGTCGCCGTCCCCGCTGTCAGATCCACCGTGGGAGGGAGGAGAGAGGGGGCAGAGGGAG CCGTCGCCGCTGGATCCGTCCTCATCCGCCGCCGGATCCACCCGCGGCCGCCGCCGACGC CGCCATCGATGCCGGATCTACCGCGGGAGGGAGGCGAGATGGAGAGGAGGAGATGGCGAG CGAGGCGAATCCATCCGTGGCTCACTCGGCCTCCCCGTCTCCGACCACTCTCTCCGCCTC AAGCTGCTCGCCTCCGAATACCACCACCGCCTCCACGTCTTCGCCCTCCAGGAGGACCTC CATGGTGATGGCATCGTGGATCTGGCCGGCAACTCGAGGGAAAAAGAAGGCCTGCGACGA TGTTGTGGATAGGCCGTCGACGATGTGGTGGATCGGCCGGCAACGTTGAGGGAGAGGAAT AAACGGAGAAAGTGAGGAGGGAGAGAGGCGGAGAAAGACGGGAAGAGAGAGGAAAAAAGA GGGAGCTGCAGTCTAGATATTTTTACTGGTAGTACATAGTGTACGTGCTTGAGACTTTAG ATAATTACAGTCAAGTGGCATTGTGCTCTATATTGTGGTAACCACAAGATTGAATTTCGC TGAAAACAA



consensusID : consensus_13050#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 789
fasta sequence
                              [CCGCCTCTCTCCGTCCTCACTTTCTCTGTTTATTCCTCTCCCTCAACGTTGCCGGCCGATCCACCACATCGTCGACGGCCTATCCACAACATCGTCGCCGGCCTTCTTTTTCCCTCGAGTTGCCGGCCAGATCCACGATGCCATCACCACGGAGGTCCTCCTAGAGGGCGAAGACGTGGAGGCGGCGGTGGTATTCGGAGGCGAGCAGCTTGAGGCGGAGAGAGTGGTCGGAGACGG-GGAGGCCGAGCGAGCCACGGATGGATTCGCATCGCTCGCCATCTCCTTCTCTCCATCTCGCCTCCCTCCCGCGGTAGATCCGGCATCGATGGCGGCGTCGGCGGCGGCCGCGGGTGGATCTGGCAGCGGTGGCAGCGGATGAGGACGGATCCGGCGGCGGCTCCCTCTGCCCCCTCTCGCCTCCCTCCCAAGCGGATCTGACGACGGGGACGGCGACCGCGTGTGGATCTGGCGGCAGCGGCGCCGGCTGAGAGTGGATCGGGTGGCAGCAGCTCCTCCCGCGGCGGATTCGAGGGCAGCGGCTCCTCTCACAGTTATCCGATGGCTGCTGCTCCCCCTACCCGGAGTGGCGGCCGGCGGCTGCTTCCCTCCTTGTGTGTTGGCAGTAACTCCCCGCCCCCCTGGCTGCCCCTCACCTCCCCGACGTGGAGCCGACGGTGGTTCGATTTTTGATTTGTGAATATTTTGAGGATTTTGTTTTTTTGATTTGTGAATATTTTGAGGATTTTGTGATTTGGAATGTTGATATAGTAACCACAGTACGACGGCGGT]

[+] EMBL AK073289             [CCGCCTCTCTCCGTCCTCACTTTCTCTGTTTATTCCTCTCCCTCAACGTTGCCGGCCGATCCACCACATCGTCGACGGCCTATCCACAACATCGTCGCCGGCCTTCTTTTTCCCTCGAGTTGCCGGCCAGATCCACGATGCCATCACCACGGAGGTCCTCCTAGAGGGCGAAGACGTGGAGGCGGCGGTGGTATTCGGAGGCGAGCAGCTTGAGGCGGAGAGAGTGGTCGGAGACGG GGAGGCCGAGCGAGCCACGGATGGATTCGCATCGCTCGCCATCTCCTTCTCTCCATCTCGCCTCCCTCCCGCGGTAGATCCGGCATCGATGGCGGCGTCGGCGGCGGCCGCGGGTGGATCTGGCAGCGGTGGCAGCGGATGAGGACGGATCCGGCGGCGGCTCCCTCTGCCCCCTCTCGCCTCCCTCCCAAGCGGATCTGACGACGGGGACGGCGACCGCGTGTGGATCTGGCGGCAGCGGCGCCGGCTGAGAGTGGATCGGGTGGCAGCAGCTCCTCCCGCGGCGGATTCGAGGGCAGCGGCTCCTCTCACAGTTATCCGATGGCTGCTGCTCCCCCTACCCGGAGTGGCGGCCGGCGGCTGCTTCCCTCCTTGTGTGTTGGCAGTAACTCCCCGCCCCCCTGGCTGCCCCTCACCTCCCCGACGTGGAGCCGACGGTGGTTCGATTTTTGATTTGTGAATATTTTGAGGATTTTGTTTTTTTGATTTGTGAATATTTTGAGGATTTTGTGATTTGGAATGTTGATATAGTAACCACAGTACGACGGCGGT]
[+] EMBL C73972               [                                   CTCTCCCTCAACGTTGCCGGCCGATCCACCACATCGTCGACGGCCTATCCACAACATCGTCGCCGGNCTTCTTTTTCCCTCGAGTTGCCGGCCAGATCCACGATGCCATCACCACGGAGGTCCTCCTAGAGGGCGAAGACGTGGAGGNGGNGGTGGTATTCGGAGGCGAGCAGCTTGAGGNGGAGAGAGTGGTCGGAGACGG GGAGGCCGAGCGAGCCACGGATGGATTCGCATCGCTCGCCATCTCCTTCTCTCCATCTCGCCTCCCTCCCGNGGTAGATCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU033298             [                                                                 ACATCGTCGACGGCCTATCCACAACATCGTCGCCGGCCTTCTTTTTCCCTCGAGTTGCCGGCCAGATCCACGATGCCATCACCACGGAGGTCCTCCTAGAGGGCGAAGACGTGGAGGCGGCGGTGGTATTCGGAGGCGAGCAGCTTGAGGCGGAGAGAGTGGTCGGAGACGGTNGAGGCCGAGCNAGCCACGGATGGATTCGCATCGCTCGCNATCTCCTTCTCTCCATCTNGNCTCCCTCCCGTGGTAGATCCGGCATCGATGGng                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU161946             [                                                                                         CATCGTCGCCGGCCTTCTTTTTCCTTCGAGTTGCCGGCCAGATCCACGATGCCATCACCACGGAGGTCCTCCTAGAGGGCGAAGACNTGGAGGCGGCGGTGGTATTCGGAGGCGAGCAGCTTGAGGCGGAGAGAGTGGTCGGAGACGG GGAGGCCGAGCGAGCCACGGATGGATTCGCATCGCTCGCCATCTCCTTCTCTCCATCTCGCCTCCCTCCCGCGGTAGATCCGGCATCGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_13050#2 CCGCCTCTCTCCGTCCTCACTTTCTCTGTTTATTCCTCTCCCTCAACGTTGCCGGCCGAT CCACCACATCGTCGACGGCCTATCCACAACATCGTCGCCGGCCTTCTTTTTCCCTCGAGT TGCCGGCCAGATCCACGATGCCATCACCACGGAGGTCCTCCTAGAGGGCGAAGACGTGGA GGCGGCGGTGGTATTCGGAGGCGAGCAGCTTGAGGCGGAGAGAGTGGTCGGAGACGGGGA GGCCGAGCGAGCCACGGATGGATTCGCATCGCTCGCCATCTCCTTCTCTCCATCTCGCCT CCCTCCCGCGGTAGATCCGGCATCGATGGCGGCGTCGGCGGCGGCCGCGGGTGGATCTGG CAGCGGTGGCAGCGGATGAGGACGGATCCGGCGGCGGCTCCCTCTGCCCCCTCTCGCCTC CCTCCCAAGCGGATCTGACGACGGGGACGGCGACCGCGTGTGGATCTGGCGGCAGCGGCG CCGGCTGAGAGTGGATCGGGTGGCAGCAGCTCCTCCCGCGGCGGATTCGAGGGCAGCGGC TCCTCTCACAGTTATCCGATGGCTGCTGCTCCCCCTACCCGGAGTGGCGGCCGGCGGCTG CTTCCCTCCTTGTGTGTTGGCAGTAACTCCCCGCCCCCCTGGCTGCCCCTCACCTCCCCG ACGTGGAGCCGACGGTGGTTCGATTTTTGATTTGTGAATATTTTGAGGATTTTGTTTTTT TGATTTGTGAATATTTTGAGGATTTTGTGATTTGGAATGTTGATATAGTAACCACAGTAC GACGGCGGT



consensusID : consensus_13050#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence
                              [TGGATCTGACAGCGGGGACCGCGACCGCGTGTGGATCCCGTGGCGGTGGCCCTGGCTGAAAATGGATCGGGTGGCAACAACTTCCTTCTGCGGCGGATTCCAAGGCAACGGCTCCTCTAACAATTATTCCGTGGCTGCTGCTCCCCCCTCCCCGGAATGGCGGCCGACAACTGCTTCCCTCCCCTGGTGTTGGCAACAACTCCCCGCCTTCCTGGCTGGCCCTTACCTTCCCGACCTGGAACCCACCGGGGGTTGAATTTTTTATTTGGGAATATTTTGAAGATTTTGTGAATTGGAATGGTGATATAATAACCACAGTAAAAAAAAAAAAAAAAAAACTCCAGACCTGAATTTTTTTTTTTTTT]

[+] EMBL CF326736             [TGGATCTGACAGCGGGGACCGCGACCGCGTGTGGATCCCGTGGCGGTGGCCCTGGCTGAAAATGGATCGGGTGGCAACAACTTCCTTCTGCGGCGGATTCCAAGGCAACGGCTCCTCTAACAATTATTCCGTGGCTGCTGCTCCCCCCTCCCCGGAATGGCGGCCGACAACTGCTTCCCTCCCCTGGTGTTGGCAACAACTCCCCGCCTTCCTGGCTGGCCCTTACCTTCCCGACCTGGAACCCACCGGGGGTTGAATTTTTTATTTGGGAATATTTTGAAGATTTTGTGAATTGGAATGGTGATATAATAACCACAGTAAAAAAAAAAAAAAAAAAACTCCAGACCTGAATTTTTTTTTTTTTT]


>consensus_13050#3 TGGATCTGACAGCGGGGACCGCGACCGCGTGTGGATCCCGTGGCGGTGGCCCTGGCTGAA AATGGATCGGGTGGCAACAACTTCCTTCTGCGGCGGATTCCAAGGCAACGGCTCCTCTAA CAATTATTCCGTGGCTGCTGCTCCCCCCTCCCCGGAATGGCGGCCGACAACTGCTTCCCT CCCCTGGTGTTGGCAACAACTCCCCGCCTTCCTGGCTGGCCCTTACCTTCCCGACCTGGA ACCCACCGGGGGTTGAATTTTTTATTTGGGAATATTTTGAAGATTTTGTGAATTGGAATG GTGATATAATAACCACAGTAAAAAAAAAAAAAAAAAAACTCCAGACCTGAATTTTTTTTT TTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13050#2      ------------------------------------------------------------
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      TATATCAATCGGCATTGGAGTGAAAATAAAAGAAGCCAACTCGATCAATCGGCTAATCGA 60
consensus_13050#0      -----------TNTTCCAGATCGATCAACCAACCCTCACCCTCATCCGCCGCCTCCTCTC 49
                                                                                   

consensus_13050#2      ------------------------------------------------------------
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      GTCAATTGCTCCCAATCCCATTGCCCCTAATTCCCAAAATACATGAATAACAAAATTACT 120
consensus_13050#0      CTCTCCTCTCCTCGTCGGCGCCGCCGCCCCCGCCGCCGCCGGAAGAAGAGAAGAGAAGAA 109
                                                                                   

consensus_13050#2      ------------------------CCGCCTCTCTCCGTCCTCACTTTCTCTGTTTATTCC 36
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      CAATTGCAATCCCAAACCAAAATAAAAAATCTCCACAAAATCAACATCCCAAATCAAACC 180
consensus_13050#0      GGCGATCATCCATGGAGCGAGAGGAGGATGCTTCTTCTACCC-CTCTCCCCGGCGGCGCC 168
                                                                                   

consensus_13050#2      TCTCCCTCAACGTTGCCGGCCGATCCACCACATCGTCGACGGCCTA-TCCACAACATCGT 95
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      GGCGTCGTACTGTGGTTACTATATCAACATTCCAAATCACAAAATC-CTCAAAATATTCA 239
consensus_13050#0      GATGAC-TACATCCGCGACTCCATCCACGACTCGCTCGGCCTCCCCGTCTCCGACCGCTC 227
                                                                                   

consensus_13050#2      CGCCGGCCTTCTTTTTCCCTCGAGTTGCCGGCCAGATCCACGATGCCATCACCACGGAGG 155
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      CAAATAAAAAAATCAAACCACCGTCGGCT--CCACGTCGGGGAGGTGAGGGGCAGCCAGG 297
consensus_13050#0      CCTCCGCCTCAAGCTGCTCGCCTCCGAGGACCATCGCCGCCGCCTCCAGGACCACGTCT- 286
                                                                                   

consensus_13050#2      TCCTCCTAGAGG-GCGAAGACGTGGAGGCGGCGGTGGTATTCGGAGGCGAGCAGCTTGAG 214
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      GAGGCGGGGAGTTGCTGCCAACACCAGGGGAGGGAAGCAGCTGTCGGCCGCCACTCCGGG 357
consensus_13050#0      TCGTCCTCGAGGAGGACCTCCGCGCAGCCGCACGCCGCATCGAACAGCTCAAGGCGGAGT 346
                                                                                   

consensus_13050#2      GCGGAGAGAGTGGTCGGAGACGGGGAGGCCGA-GCGAGCCACGGATGGAT-TCGCATCGC 272
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      GAGGGGGGAGCAG-CAGCCACCGGATAACTGC-TAGAGGAGCCGCTGCCC-TCGAATCCG 414
consensus_13050#0      CCACCATGAACGCCGCGGGCCTGCGCCGCTGCATCGAGGAGAAGGAGACCATGGTCTCCG 406
                                                                                   

consensus_13050#2      TCGCCATCTCCTTCTCTCCATCTCGCCTCCCTCCCGCGGTAGATC-CGGCATCGATGGCG 331
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      CCGCAGGAGGAAGCTGCTGCCACCCGATCCACTCTCAGCCAGCGC-CACCGCCACCGGAT 473
consensus_13050#0      CCTACAACGACCTCTCCTCCCACTCCACCAAGCTTGAGCGGGAGTGCACCCTCTACGAGC 466
                                                                                   

consensus_13050#2      GCGTCGGCGGCGGCCGCGGGTGGATCTGGCAGCGGTG-GCAGCGGATGAGGACGGATCCG 390
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      CCACACGCGGTCGCCGTCCCCGCTGTCAGATCCACCGTGGGAGGGAGGAGAGAGGGGGCA 533
consensus_13050#0      GGGACCTCGAACGCGCCATGGAGTCCTGCGACGACCTCGCTAAGGAGAACGACGAAATGC 526
                                                                                   

consensus_13050#2      GCGGCGGCTCCCTCTGCCCCCTCTCGCCTCCCTCCCAAGCGGATCTGACGACGGGGACGG 450
consensus_13050#3      ---------------------------------------TGGATCTGACAGCGGGGACCG 21
consensus_13050#1      GAGGGAGCCGTCGCCGCTGGATCCGTCCTCATCCGCCGCCGGATCCACCCGCGGCCGCCG 593
consensus_13050#0      GCGCACGCCTCAATGACCGCACCACCCTTTCTGCATTGACCACTCAAGTTGAAGCTCTGC 586
                                                                  **        *      

consensus_13050#2      CGACCGCGTGTGGATCTGGCGGCAGCGGCGCCGGCTGAGAGTGGATCGGGTGGCAGCAGC 510
consensus_13050#3      CGACCGCGTGTGGATCCCGTGGCGGTGGCCCTGGCTGAAAATGGATCGGGTGGCAACAAC 81
consensus_13050#1      CCGACGCCGCCATCGATGCCGGATCTACCGCGGGAGGGAGGCGAGATGGAGAGGAGGAGA 653
consensus_13050#0      ACAAGGACAAGGAAAACCTAAGGATCAATCTTAATAAAGCAGAGGAGGAGGTCAAGCTGC 646
                            *               *                         *      *     

consensus_13050#2      T--CCTCCCGCGGCGG-ATTCGAGGGCAGCGGCTCCTCTCACAGTT--ATCCGATGGCTG 565
consensus_13050#3      TT-CCTTCTGCGGCGG-ATTCCAAGGCAACGGCTCCTCTAACAATT--ATTCCGTGGCTG 137
consensus_13050#1      TG-GCGAGCGAGGCGA-ATCC---ATCCGTGGCTCACTCGGC--CT--CCCCGTCTCCGA 704
consensus_13050#0      TATTCGAGGAAAACAAGATTCTTGACGAAGAGAACAAAAAACTGTTGGCTCTGTTGGAGA 706
                       *   *        *   ** *          *  *      *   *              

consensus_13050#2      -----CTGCTCCCCC-TACCCGGAGTG---GCGGCCGGCGGCTGCTTCCCTCCTTGTGTG 616
consensus_13050#3      -----CTGCTCCCCCCTCCCCGGAATG---GCGGCCGACAACTGCTTCCCTCCCCTGGTG 189
consensus_13050#1      -----CCACTCTCTCCGCCTCAAGCTGCTCGCCTCCGAATACCACCACCGCCTCCACGTC 759
consensus_13050#0      AAGAGCGACAGCACCGGTCTGAGAGAAA--GCATTCCTCCAGTGCGTCCACCACCAAGCA 764
                            *  *     *   *           **   *        *  **  *     *  

consensus_13050#2      TTGGCAGTAACTCCCCGCCCCCCTGGCTG--CCCCTCACCTCCCCGACGTGGAGCCGAC- 673
consensus_13050#3      TTGGCAACAACTCCCCGCCTTCCTGGCTG--GCCCTTACCTTCCCGACCTGGAACCCACC 247
consensus_13050#1      TTCGCCCTCCAGGAGGACCTCCATGGTGAT-GGCATCGTGGATCTGGCCGGCAACTCGAG 818
consensus_13050#0      CAAGCGCAAATCATCAAGTTTGAAGGATACGAGCCCAGTGGGTCGGACCATCGATTTCAA 824
                          **                   **       *         * * *            

consensus_13050#2      GGTGGTTCGATTTTTG-----AT-TTGTGAATA---TTTTGAGGATTTTGTTTTTTTGAT 724
consensus_13050#3      GGGGGTTGAATTTTTT-----AT-TTGGGAATA---TTTTGAAGATTTTGTGAATTGGAA 298
consensus_13050#1      GGAAAAAGAAGGCCTGCGACGATGTTGTGGATAGGCCGTCGACGATGTGGTGGATC-GGC 877
consensus_13050#0      TGGTGCAGATTCATCATCGAGGC-ACCCGCTTTCACCATTG-CCACCAAACTCCCCAGAC 882
                        *                          *  *      * *   *            *  

consensus_13050#2      TTGTGAATATTTTGAGGATTTTGTGATTTGGAATGTTGAT--ATAGTA-ACCACAGTACG 781
consensus_13050#3      TGGTGA-TATAATAACCACAGTAAAAAAAAAAAAAAAAAA--ACTCCAGACCTGAATTTT 355
consensus_13050#1      CGGCAA-CGTTGAGGGAGAGGAATAAACGGAGAAAGTGAG--GAGGGAGAGAGGCGGAGA 934
consensus_13050#0      TACAGGGCGCACAAGAAATGAAAATGAAAGCGACCATCATCCGCTGCTTATGGCAGGCGT 942
                                                       *     *          *          

consensus_13050#2      ACGGCGGT---------------------------------------------------- 789
consensus_13050#3      TTTTTTTTTT-------------------------------------------------- 365
consensus_13050#1      AAGACGGGAAGAGAGAGGAAAAAAGAGGGAGCTGCAGTCTAGATATTTTTACTGGTAGTA 994
consensus_13050#0      GCTGCTCATCTGATCCTGCTAATATAAAAACTTGCTG-CTGGGTTCTACTCCAGTGGATA 1001
                                                                                   

consensus_13050#2      ------------------------------------------------------------
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      CATAGTGTACGTGCTTGAGACTTTAGATAATTACAGTCAAGTGGCATTGTGCTCTATATT 1054
consensus_13050#0      GAACGAAGAACCCCCCAAGGCATGACAAAGCCTACCTGAATGCTACTCGTTCTGGTTGTA 1061
                                                                                   

consensus_13050#2      ------------------------------------------------------------
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      GTGGTAACCACAAGATTGAATTTCGCTGAAAACAA------------------------- 1089
consensus_13050#0      GAGTCATCCTTTGGTCAGAAAACAACTTTTAACTTACTGTACCTTCCTAAGGCAAGTACT 1121
                                                                                   

consensus_13050#2      ------------------------------------------------------------
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      ------------------------------------------------------------
consensus_13050#0      AGTAATAGCTTTTTCTTGGCCTGTGACTGGTCTCTCTGTTCATTTTCATGAATGTAACGG 1181
                                                                                   

consensus_13050#2      ------------------------------------------------------------
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      ------------------------------------------------------------
consensus_13050#0      CTTACTCTTCTTCTTATTATTAATTCTTGGTAGAGTATTAGTATTATGGAGCTACGTATG 1241
                                                                                   

consensus_13050#2      ------------------------------------------------------------
consensus_13050#3      ------------------------------------------------------------
consensus_13050#1      ------------------------------------------------------------
consensus_13050#0      TGATGTGCTGGTCTCTCCTCTGACCTCTAATCTGCTTGTCATGTATGAAATGAATGCCTC 1301
                                                                                   

consensus_13050#2      ---------------------------------------------------
consensus_13050#3      ---------------------------------------------------
consensus_13050#1      ---------------------------------------------------
consensus_13050#0      ATCTCGATCATCTGGTTATCAATCAATTGATGAAAGCATTTATCTAAAAAA 1352
                                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)