Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13053 cluster # 13053       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13053#0 length = 1145 sequences # 10  
consensus_13053#1 length = 1033 sequences # 2  

consensusID : consensus_13053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1145
fasta sequence
                              [GAACCAACAGCTTGGAGCCAAAGAGAAACAATAGCC-AAAAAAAAAAAGCAGCCAGAGCAAAAGGGCAGGACAGACAGGCAGACCGAATAAAATCTCTCCACGACGATCCTCTCCTCCCCCTCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATCGGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACAAAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCC-ACTTATCGACCTAATTGAGTCCA-TTGTTTCCGTTTGCTGAGATGCC-ATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTTCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTCTCATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAGATTGTTGTTGTTCAAAAAAAAAAAAAAA]

[+] EMBL CF325370             [GAACCAACAGCTTGGAGCCAAAGAGAAACAATAGCCAAAAAAAAAAAAGCAGCCAGAGCAAAAGGGCAGGACAGACAGGCAGACCGAATAAAATCTCTCCACGACGATCCTCTCCTCCCCCTCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATCGGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACAAAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK120220             [                GCCAAAGAGAAACAATAGCC AAAAAAAAAAAGCAGCCAGAGCAAAAGGGCAGGACAGACAGGCAGACCGAATAAAATCTCTCCACGACGATCCTCTCCTCCCCCTCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATCGGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACAAAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCC ACTTATCGACCTAATTGAGTCCA TTGTTTCCGTTTGCTGAGATGCC ATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTTCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTCTCATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAGATT                         ]
[+] EMBL CB648431             [                                                                                                                                        TCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATCGGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACAAAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCC ACTTATCGACCTAATTAAGTCCA TTGTTTCCGTTTGCTGAGATGCC ATCGACAAGTGTGAAGACCTTTTTC                                                                                                                                                                                                                            ]
[+] EMBL CF309441             [                                                                                                                                                                                                              AGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACAAAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCA TTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTA                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C97128               [                                                                                                                                                                                                                                                        GTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTNTCGGCACCGAAATATGTCGAGTATCTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB035353             [                                                                                                                                                                                                                                                                                            TCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCC ACTTATCGACCTAATTGAGTCCA TTGTTTCCGTTTGCTGAGATGCC ATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTT                                                                                                                                                                                                      ]
[-] EMBL CB648432             [                                                                                                                                                                                                                                                                                                                                     CAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCC ACTTATCGACCTAATTAAGTCCA TTGTTTCCGTTTGCTGAGATGCC ATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTTCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTCTCATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAGATAGTTGTTGTTC               ]
[+] EMBL BI805695             [                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCCAACTTATCGACCTAATTGAGTCCACTTGTTTCCGTTTGCTGAGATGCCAATTGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTTCTTCaaaaaaaa                                                                                                                 ]
[+] EMBL AU088574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCC ACTTATCGACCTAATTGAGTCCA TTGTTTCCGTTTGCTGAGATGCC ATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTTCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTCTCATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAGATTGTTGTTGTTCAAAAAAAAAAAAAAA]
[-] EMBL CF278809             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCC ACTTATCGACCTAATTGAGTCCA TTGTTTCCGTTTGCTGAGATGCC ATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTTCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTCTCATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAGATTGTTGTTGTTCTAAAAAAAAAA    ]


>consensus_13053#0 GAACCAACAGCTTGGAGCCAAAGAGAAACAATAGCCAAAAAAAAAAAGCAGCCAGAGCAA AAGGGCAGGACAGACAGGCAGACCGAATAAAATCTCTCCACGACGATCCTCTCCTCCCCC TCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATC GGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACA AAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAAT GCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGT GGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCT GTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTC TGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCT GATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTG ATGGACTGGATTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACC CCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTT TATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCAC CTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAG GCTGAGCTTGCTCCACTTATCGACCTAATTGAGTCCATTGTTTCCGTTTGCTGAGATGCC ATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCA AAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTT CTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTCTCA TGAACACTGGGATAAATTCAATGGGGGAATAGAGGAGATTGTTGTTGTTCAAAAAAAAAA AAAAA



consensusID : consensus_13053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1033
fasta sequence
                              [TGACTGGACTGAAGGAGTAGAAACTCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATCGGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACAAAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGACTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATNTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCC-CTT-CCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCCACTTATCGACCTAATTGAGTCCATTGTTTCCGTTTGCTGAGATGCCATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTTCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTTTCATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAAAAAAAAAAAAAA]

[+] EMBL CF278808             [TGACTGGACTGAAGGAGTAGAAACTCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATCGGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACAAAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGACTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTGATGGACTGGATNTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAACCCC CTT CCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCA                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CF309440             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTGATGGACTGGAT TGAGGTCCAGCTTGACGATGAATCCA TTTTCCTCAGAAACTTGGAACCCCTCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCCACTTATCGACCTAATTGAGTCCATTGTTTCCGTTTGCTGAGATGCCATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTTTCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTTTCATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAAAAAAAAAAAAAA]


>consensus_13053#1 TGACTGGACTGAAGGAGTAGAAACTCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTA CAGAGGTATTTATAGGGAGAGATCGGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTT TTTCTTTTGGCAGGGAGAGGGACAAAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAG AAGACATTCAGGCCAAAGAAGAATGCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAG CACATTGATGCAACCTTAGGAAGTGGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGA GAGGATCTCAATGAATGGCTAGCTGTTAACACTGTTGATTTCTTCAACCAGGTGAACATC CTTTACGGCACTCTGATGGAGTTCTGCACGCCTACTACATGTCCAACAATGTCAGCTGGA CCTAAGTTTGAGTACAGATGGACTGATGGAATTCAGATCAAGAAACCCATCGAGGTTTCG GCACCGAAATATGTCGAGTATCTGATGGACTGGATNTGAGGTCCAGCTTGACGATGAATC CATTTTTCCTCAGAAACTTGGAACCCCCTTCCACAAAATTTTCGGGAAGTCGTGAAGACG ATATTCAAGCGCCTTTTCCGTGTTTATGCTCATATTTACCACACACATTTTCAGAAGATT GTGAGCCTCAAGGAAGAAGCCCACCTTAACACCTGCTTCAAGCATTTCACATTGTTCACC TGGGAGTTCAAATTGATCGATAAGGCTGAGCTTGCTCCACTTATCGACCTAATTGAGTCC ATTGTTTCCGTTTGCTGAGATGCCATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTT TTAATTTATTTTTCGGGTACAGCAAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAA ATGGCCAAATAAGTCAATTTTTTTCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCT GAATTTAAGAGATGCTTTGTTTCATGAACACTGGGATAAATTCAATGGGGGAATAGAGGA AAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13053#0      GAACCAACAGCTTGGAGCCAAAGAGAAACAATAGCCAAAAAAAAAAAGCAGCCAGAGCAA 60
consensus_13053#1      ------------------------------------------------------------
                                                                                   

consensus_13053#0      AAGGGCAGGACAGACAGGCAGACCGAATAAAATCTCTCCACGACGATCCTCTCCTCCCCC 120
consensus_13053#1      ----------------------------------TGACTGGACTGAAGGAGTAGAAAC-- 24
                                                         *  *      **     *     *  

consensus_13053#0      TCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATC 180
consensus_13053#1      TCCTGCCTATTTCTCTCTCTCTCATACCTTCCGCTACAGAGGTATTTATAGGGAGAGATC 84
                       ************************************************************

consensus_13053#0      GGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACA 240
consensus_13053#1      GGCGCCAGCATCCCTGATCATATTCAGTTCTGAGTTTTTCTTTTGGCAGGGAGAGGGACA 144
                       ************************************************************

consensus_13053#0      AAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAAT 300
consensus_13053#1      AAGATGAGTCTTTTCGGCCTCGGAAGCAAGAACCAGAAGACATTCAGGCCAAAGAAGAAT 204
                       ************************************************************

consensus_13053#0      GCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGT 360
consensus_13053#1      GCACCATCTGGCAATAAGGGTGTGCAGCTGAAGAAGCACATTGATGCAACCTTAGGAAGT 264
                       ************************************************************

consensus_13053#0      GGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCT 420
consensus_13053#1      GGTAATTTGAGGGATGCGGTCAGGCTGCCTCCTGGAGAGGATCTCAATGAATGGCTAGCT 324
                       ************************************************************

consensus_13053#0      GTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTC 480
consensus_13053#1      GTTAACACTGTTGATTTCTTCAACCAGGTGAACATCCTTTACGGCACTCTGATGGAGTTC 384
                       ************************************************************

consensus_13053#0      TGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGGCT 540
consensus_13053#1      TGCACGCCTACTACATGTCCAACAATGTCAGCTGGACCTAAGTTTGAGTACAGATGGACT 444
                       ********************************************************* **

consensus_13053#0      GATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTG 600
consensus_13053#1      GATGGAATTCAGATCAAGAAACCCATCGAGGTTTCGGCACCGAAATATGTCGAGTATCTG 504
                       ************************************************************

consensus_13053#0      ATGGACTGGATT-GAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAAC 659
consensus_13053#1      ATGGACTGGATNTGAGGTCCAGCTTGACGATGAATCCATTTTTCCTCAGAAACTTGGAAC 564
                       ***********  ***********************************************

consensus_13053#0      CCCCTTCCCACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGT 719
consensus_13053#1      CCCCTTCC-ACAAAATTTTCGGGAAGTCGTGAAGACGATATTCAAGCGCCTTTTCCGTGT 623
                       ******** ***************************************************

consensus_13053#0      TTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCA 779
consensus_13053#1      TTATGCTCATATTTACCACACACATTTTCAGAAGATTGTGAGCCTCAAGGAAGAAGCCCA 683
                       ************************************************************

consensus_13053#0      CCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAA 839
consensus_13053#1      CCTTAACACCTGCTTCAAGCATTTCACATTGTTCACCTGGGAGTTCAAATTGATCGATAA 743
                       ************************************************************

consensus_13053#0      GGCTGAGCTTGCTCCACTTATCGACCTAATTGAGTCCATTGTTTCCGTTTGCTGAGATGC 899
consensus_13053#1      GGCTGAGCTTGCTCCACTTATCGACCTAATTGAGTCCATTGTTTCCGTTTGCTGAGATGC 803
                       ************************************************************

consensus_13053#0      CATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGC 959
consensus_13053#1      CATCGACAAGTGTGAAGACCTTTTTCTTCCTTTTCTTTTAATTTATTTTTCGGGTACAGC 863
                       ************************************************************

consensus_13053#0      AAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTT 1019
consensus_13053#1      AAAGTGTGCAGAAAGAGCGAGTTCATGGCTAAAAGAAATGGCCAAATAAGTCAATTTTTT 923
                       ************************************************************

consensus_13053#0      TCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTCTC 1079
consensus_13053#1      TCTTCTGATTTTGTGTTCCTTCTCCCTTCTATTCTCTGAATTTAAGAGATGCTTTGTTTC 983
                       ********************************************************* **

consensus_13053#0      ATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAGATTGTTGTTGTTCAAAAAAAAA 1139
consensus_13053#1      ATGAACACTGGGATAAATTCAATGGGGGAATAGAGGAAA------------AAAAAAAAA 1031
                       ************************************* *            *********

consensus_13053#0      AAAAAA 1145
consensus_13053#1      AA---- 1033
                       **    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)