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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 825 fasta sequence
[GTCACCAATGCGGCAGGATTCAGTGCCATACAGTGTGTGGCCCGCGNTTGGGCGNTCCACAAGAAGGTTGTGNNCACCCNTGTNTCTGACCCGTCCCCCCGTTTCCCCTGTGGGGGGACCCTCCCTGGAACCCAGGTTTNGGGTTCCCCTTNTCGCCGGTCCCCAAGTTGGGGTNCCCC-TGTCTCGA-GTTCAGCAAGGTCGGATTTGTCTACCGTG--AGAACCACAGGTCCCCC--GGA-TACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTTGGATGCAC-CGACGCCAC-CCAGGTGCTCA-AGGAGC-TCGAGGAGGC-CAAGAAGGCGTACC-CTGATGCATTCGTCC-GTATC-ATCGGCTTCGACA-AC-GTCAGGCAGGTGC-AGC-TCATCAGCTTC-ATC-GCCTACAAGC-CCCCGGGCTGCGAGGAGTCTGGTGGC-AACTAAGCCGTCATCGTCATATATAGCCTCGTTTAATT-GTTCATCTCTGATTCGA-TGATGTCTC-C-CA-CCTTGTTTCGTGTGTTCCC-A-GTTTGTTCAT-C-GTCTTTT-GATTTTAC-CGGCC-GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTAT-ATATA-TTTATA--AAAA--AAAAGAGATGGATGTGAATCCTAAAAAAAATGTGTCCAACAATCAATTCGTCGACAATGAAAATTTGATCATGGAATTAAAAAA--AAAAAAAAAAAAAAAAAACACTGTCGTGCCGTTACGTAGCGTAT]
[+] EMBL BM421958 [GTCACCAATGCGGCAGGATTCAGTGCCATACAGTGTGTGGCCCGCGNTTGGGCGNTCCACAAGAAGGTTGTGNNCACCCNTGTNTCTGACCCGTCCCCCCGTTTCCCCTGTGGGGGGACCCTCCCTGGAACCCAGGTTTNGGGTTCCCCTTNTCGCCGGTCCCCAAGTTGGGGTNCCCC TGTCTCGA GTTCAGCAAGTTCGGATTTGTCTACCGTG AGAACCACAGGTCCCCC GGA TACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTTGGATGCAC CGACGCCAC CCAGGTGCTCA AGGAGC TCGAGGAGGC CAAGAAGGCGTACC CTGATGCATTCGTCC GTATC ATCGGCTTCGACA AC GTCAGGCAGGTGC AGC TCATCAGCTTC ATC GCCTACAAGC CCCCGGGCTGCGAGGAGTNTGGTGGC AACTAAGCCGTCATCGTCATATATAGCCTCGTTTAATTNGTTCATCTCTGATTCGA TGATGTCTC C CC CCTTGTTTCGTGTGTTCCC C GTTTGTTCAT C GTCTTTTGGATTTTCC CGGCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTAT ATATA TTTATA AAAA AAAAa ]
[+] EMBL BQ906749 [ GTGCCCCTTGTCTCGAGGTTCA CAAGGTCGGATTTGTCTACCGTG AGAACCACAGGTCCCCC GGA TACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTTGGATGCACTCGACGCCAC CCAGGTGCTCATAGGAGC TCGAGGAGGC CAAGAAGGCGTACC CTGATGCATTCGTCC GTATCTATCGGCTTCGACA AC GTCAGGCAGGTGCTAGCGTCATCAGCTTCTATC GCCTACAAGC CCCCGGGCTGCGAGGA TCTGGTGGC AACTAAGCCGTCATCGTCATATATAGCCTCGTTTAATT GTTCATCTCTGATTCGAGTGATGTCTC C CACCCTTGTTTCGTGTGTTCCC ACGTTTGTTCAT C GTCTTTT GATTTTAC CGGCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATNTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTAN ATATA TTTATA AAAA AAAAa ]
[+] EMBL BM038132 [ CAACCAAGTC GA TTGTCTACCGTG AGAACCCCA TCCCCC GGA TACTACGAC GCAGGTACTGGACCATGTGGAAGCTGCCCATGTTTGGATGCAC CGACGCCAC CCAGGTGCTCA AGGAGC TCGAGGAGGC CCAGAAGGCGTACC CTGATGCATTCGTCC GTATC ATCGGCTTCGACACAC GTCAGGCAGGTGC AGC TCATCAGCTTC ATC GCCTACAAGC CCCCGGGCTGCGAGGAGTCTGGTGGC NACTAAGCCGTCATCGTCATATATAGCCTCGTTTAATT GTTCATCTCTGATTCGA TGATGTCTC C CC CCTTGTTTCGTGTGTTCCC C GTTTGTTCAT C GTCTTTT GATTTTAC CGGCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATTTGAATGAAATCTATGAAAGCTCCGGCTAT ATATA TTTATACCAAGG GTATGAGATGGATGTGAA AAAAAAAA ]
[+] EMBL BI807966 [ tgtTCTCCCGTGGAAGCACCACAGGTCCCCCCGGGATTACTACG C GCAGGTACTGGACCATGTGGAA CTGCCCATGTTTGGATGCAC CGACGCCAC CCAGGGGCTCA AGGAGC TCGAGGAGCC CAAGAAGGCGTACC CTGATGCATTCGTCC GTATC ATCGGCTTCGACA AC GTCAGGCAGGT C AGC TCATCAGCTTC ATC GCCTACAAGC CCCCGGGCTGCGAGGAGTCTGGTGGCAAACTAA CCGTCATCGTCATATATAGCCTCGTTTAATT GTTCATCTCTGATTCGA TGATGTCTC C CA CCTTGTTTCGTGTGTTCCC A GTTTGTTCAT C GTCTTTT GATTTTAC C GCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTAT ATATA TTTATACCAAAA AAAAaa ]
[+] EMBL BI810122 [ TCTACCGTG AGAACCACAGGTCCCCC GGA TACTACGAC GCAGGTACTGGACCATGTGGAAGCTGCCCATGTTTGGATGCAC CGAC CCAC CCAGGTGCTCA AGGAGC TCGAGGA GC CAAGAAGGCGTACC CTGATGCATTCGTCC GTATC ATCGGCTTCGACA AC GTCA GCAGGT C AGC TCATCAGCTTC ATCGGCCTACAAGC CCCCGGGCTGCGAGGAGTCTGGTGCC AACTAA CCGTCATCGTCATATATACCCTCGTTTAATT GTTCATCTCTGATTCGA TGATGTCTC C CA CCTTGTTTCGTGTGTTCCC ACGTTTGTTCAT C GTCTTTT GATTTTAC CGCCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTAT ATATA TTTATACCAAGG GTATGAGATGGATGTGAATCCTAAAAAAAAaa ]
[+] EMBL BI808302 [ ACCACAGGTCCCCC GA TACTACG CGGCAGGTACTGGACCATGTGGAA CTGCCCATGTTTGGATGCAC CGACGCCAC CCAGGTGCTCA AGGAGC TCGAGGAGGC CAAGAAGGCGTACCACTGATGCATTCGTCCAGTATC ATCGGCTTCGACA ACAGTCAGGCAGGTGC AGC TCATCAGCTTC ATC GCCTACAAGCACCCCGGGCTGCGAGGAGTCTGGTGGCAAACTAAGCCGTCATCGTCATATATAGCCTCGTTTAATT GTTCATCTCTGATTCGA TGATGTCTC CACA CCTTGTTTCGTGTGTTCCC A GTTTGTTCAT CAGTCTTTT GATTTTAC CGGCCAGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTAT ATATA TTTATA CAAA AAA ]
[-] EMBL CF333242 [ GTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCAC TGACGCCAC CCAGGTGCTCA AGGAGC TCGAGGAGGC CAAGAAGGCGTACC CTGATGCATTCGTCC GTATC ATCGGCTTCGACA AC GTCAGGCAGGTGC AGC TCATCAGCTTC ATC GCCTACAAGC CCCCGGGCTGCGAGGAGTCTGGTGGC AACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATT GTTCATCTCTGATTCGA TGATGTCTC C CA CCTTGTTTCGTGTGTTCCC A GTTTGTTCAT C GTCTTTT GATTTTAC CGGCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATGGAAGCTCCGGCTATAATATA TTTATA CAAAGGGTACGAGATGGATGTGAATCCTAGAGCATATGTGTCCAACAATCAATTCGTCGACAATGAAAATTTGATCATGGAATTAAAAAA AAAAAAAAAA ]
[+] EMBL BI807713 [ CTGCCCATGTTTGGATGCAC CGACGCCACACCAGGTGCTCA AGGAGCTTCGAGGAGTCACAAGAAGGCGTACC CTGATGCATTCGTCCGGTATC ATCGGCTTCGACATACGGTCA GCAGGT C AGC TCATCAGCTTC ATCGGCCTACAAGC CCCCGGGCTGCGAGGAGTCTGGTGGC AACTAAGCCGTCATCGTCATATATAGCCTCGTTTAATT GTTCATCTCTGATTCGA TGATGTCTCAC CACCCTTGTTTCGTGTGTTCCCAA GTTTGTTCAT C GTCTTTG GATTTTAC CGGCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTAT ATATA TTTAa ]
[-] EMBL CF332542 [ GC TCGAGGAGGC CAAGAAGGCGTACC CTGATGCATTCGTCC GTATC ATCGGCTTCGACA AC GTCAGGCAGGTGC AGC TCATCAGCTTC ATC GCCTACAAGC CCCCGGGCTGCGAGGAGTCTGGTGGC AACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATT GTTCATCTCTGATTCGA TGATGTCTC C CA CCTTGTTTCGTGTGTTCCC A GTTTGTTCAT C GTCTTTT GATTTTAC CGGCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGAATGAAATATATGGAAGCTCCGGCTAT ATATANTTTATA CAAAGGGTACGAGATGGATGTGAATCCTAGAGCATATGTGTCCAACAATCAATTCGTCGACAATGAAAATTTGATCATGGAATTAAAAAATCAAAAAAAAAAAAAAAAAACACTGTCGTGCCGTTACGTAGCGTAT]
[+] EMBL BI810522 [ a A GTTTGTTCATGC GTCTTTT GATTTTACACAGCC GTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCT ]
consensusID : consensus_13058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[AGTACCTGACTCCGTTCCACATGGGTGCCCATGTCTCGAGTTTCAGCCAAGTCGGATTTGTCTACCGTGAGAAACCACAGGTCCCCCGGATACTACGCACGGCAGGTACTGGACCATGTGGAACTGCCCATGTTTGGATGCACCGACGCCACCCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTCGCTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGCTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCCCCTGATCTCTCTCTGACTTGATGTAAGAGCTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGCAAGCTCCGGCTATATATATTTATACAAAAAAAAAA]
[+] EMBL BI807884 [AGTACCTGACTCCGTTCCACATGGGTGCCCATGTCTCGAGTTTCAGCCAAGTCGGATTTGTCTACCGTGAGAAACCACAGGTCCCCCGGATACTACGCACGGCAGGTACTGGACCATGTGGAACTGCCCATGTTTGGATGCACCGACGCCACCCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTCGCTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGCTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCCCCTGATCTCTCTCTGACTTGATGTAAGAGCTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGCAAGCTCCGGCTATATATATTTATACAAAAAAAAAA]
consensusID : consensus_13058#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence
[CCGGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTATATATATTTATACCAAGGGTATGAGATGGATGTGAAAAAAAAAA]
[+] EMBL BQ905921 [CCGGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATGTGAATGAAATCTATGAAAGCTCCGGCTATATATATTTATACCAAGGGTATGAGATGGATGTGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13058#0 GTCACCAATGCGGCAGGATTCAGTGCCATACAGTGTGTGGCCCGCGNTTGGGCGNTCCAC 60
consensus_13058#1 ------------------------------------------------------------
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 AAGAAGGTTGTGNNCACCCNTGTNTCTGACCCGTCCCCCCGTTTCCCCTGTGGGGGGACC 120
consensus_13058#1 ------------------------------------------------------------
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 CTCCCTGGAACCCAGGTTTNGGGTTCCCCTTNTCGCCGGTCCCCAAGTTGGGGTNCCCCT 180
consensus_13058#1 ------------------------AGTACCTGACTCCGTTCCACATG----GGTGCCCAT 32
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 GTCTCGAGTT-CAGCAAGGTCGGATTTGTCTACCGTGAGAA-CCACAGGTCCCCCGGATA 238
consensus_13058#1 GTCTCGAGTTTCAGCCAAGTCGGATTTGTCTACCGTGAGAAACCACAGGTCCCCCGGATA 92
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 CTACG-ACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTTGGATGCACCGACGCCA 297
consensus_13058#1 CTACGCACGGCAGGTACTGGACCATGTGGAA-CTGCCCATGTTTGGATGCACCGACGCCA 151
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 CCC-AGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGT 356
consensus_13058#1 CCCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGTCCGT 211
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 ATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCC 416
consensus_13058#1 ATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCC 271
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 CCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTCG-TTTA 475
consensus_13058#1 CCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTCGCTTTA 331
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 ATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTG-TT 534
consensus_13058#1 ATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGCTT 391
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 CATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGATCTCTC 594
consensus_13058#1 CATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCCCCTGATCTCTC 451
consensus_13058#2 ------------------------------------------------------------
consensus_13058#0 TCTGACTTGATGTAAGAG-TGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATG 653
consensus_13058#1 TCTGACTTGATGTAAGAGCTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATG 511
consensus_13058#2 ---------------CCGGTGGTATCTGCTACGACTATATGTTGATGGGTGAGGCATATG 45
* *****************************************
consensus_13058#0 TGAATGAAATCTATGAAAGCTCCGGCTATATATATTTATAAAAAAAAAGAGATGGATGTG 713
consensus_13058#1 TGAATGAAATCTATGCAAGCTCCGGCTATATATATTTATACAAAAAAAAAA--------- 562
consensus_13058#2 TGAATGAAATCTATGAAAGCTCCGGCTATATATATTTATACCAAGGGTATGAGATGGATG 105
*************** ************************ **
consensus_13058#0 AATCCTAAAAAAAATGTGTCCAACAATCAATTCGTCGACAATGAAAATTTGATCATGGAA 773
consensus_13058#1 ------------------------------------------------------------
consensus_13058#2 TGAAAAAAAAAA------------------------------------------------ 117
consensus_13058#0 TTAAAAAAAAAAAAAAAAAAAAAAAACACTGTCGTGCCGTTACGTAGCGTAT 825
consensus_13058#1 ----------------------------------------------------
consensus_13058#2 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||