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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 852 fasta sequence
[TATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC-GGGCGGCC-ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG-AAGGGCCGCGCCGCCGC-GGG-AGCGGGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT-GGTTTCG-TTGTTATTCAGAAG-TTATGTGTTCCAAGCCTA-TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA-GGTTGTAGCAGTTGGTCTGAACTG-CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG-TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGCAAAAATTGTTTCTTGGATGCTGA]
[+] EMBL AU173347 [TATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGGCGGCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAGAAAGGGCCGCGCCGCCGC GGG AGCGGACCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAANGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGNATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACT ]
[+] EMBL OSS2754A [ ATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCACGGGGNNCCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCCGCGCCGCCGC GGG AG GNGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCA ]
[+] EMBL OSS3108A [ ATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGG GNCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCNGCGCCGCCGCGGGG AG GGGCCCGGCGGCGCGTCCCACGAGGTTCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATC ]
[+] EMBL AK067551 [ CTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGGCGGCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCCGCGCCGCCGC GGG AGCGGGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGCAAAAATTGTTTCTTGGATGCTGA]
[+] EMBL AU068672 [ ATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGGGGTCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCNGCGCCGCCGC GGGNAGCGTGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCNTGTTGGGTTTCGNTTGTTATTCAGAAGTTTATGTGTTCCAAGCCTATTTTGGTCAAATTCTACCTTTTGAGTTGGCTCAANAAAGTGAAAGATGAAGGAGATTCTGAGGTTAGGGTTGTAGCANTTGGTCTGAACTG ]
[+] EMBL AU108924 [ ACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGGGGNCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCNGCGCCGCCGC GG AGCGNGCCCGGCGGCGCGTCCNACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTTAAATTCTACTTTTTGTGTTGNCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCATTTGGTCTGAACTGCCTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAGTTTGTGGATTTTAGAACAAATGTGATGTGCTATGATCAGTCAATTTt ]
[+] EMBL AU068671 [ GGCCAACACGCTCGTCGCCAAGNTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCCGCGCCGCCGC GGG AGCGGGCCCGGCGGCGCNTCCNACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATAaaaaaaa ]
[+] EMBL AU173348 [ TATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAa ]
[+] EMBL BI795617 [ GGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTAAGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGC AAAATTGTTTCTaaaaaa ]
[+] EMBL AU108925 [ TGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAaaaa ]
[+] EMBL AK058239 [ CAAGCCTA TTTGGTCAAATTCTACCTTTTGGGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATT ]
consensusID : consensus_13062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[AGAGGACGAGACAAGGGGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTTGGTTTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTTTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTTTGAGGTTAGGTTGTAGCAGTTGGTTTGAACTGCTTCATGTCCTCCTATCGAGCATTTCTATGTAAGGATGGGTATTAGCCTTTTAGGTGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAAAAAAAAAAAAA]
[-] EMBL CA763418 [AGAGGACGAGACAAGGGGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTTGGTTTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTTTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTTTGAGGTTAGGTTGTAGCAGTTGGTTTGAACTGCTTCATGTCCTCCTATCGAGCATTTCTATGTAAGGATGGGTATTAGCCTTTTAGGTGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13062#0 TATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCG 60
consensus_13062#1 ------------------------------------------------------------
consensus_13062#0 GCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCACGGGC 120
consensus_13062#1 ------------------------------------------------------------
consensus_13062#0 GGCCACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAGAAGGGCCGCGCC 180
consensus_13062#1 ------------------------------------------------------------
consensus_13062#0 GCCGCGGGAGCGGGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGAC 240
consensus_13062#1 ------------------------------------------------------------
consensus_13062#0 GAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGAC 300
consensus_13062#1 ------------------------------------------------------------
consensus_13062#0 AGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCT 360
consensus_13062#1 -----------------------AGAGGACGAGACA--AGGGGGATCAATGAGGCTTGCT 35
* * ** * ******************
consensus_13062#0 GTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGAT 420
consensus_13062#1 GTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGAT 95
************************************************************
consensus_13062#0 AACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTTGGT 480
consensus_13062#1 AACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTTGGT 155
************************************************************
consensus_13062#0 TTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTCTACCTTTTGAG 540
consensus_13062#1 TTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTTTACCTTTTGAG 215
************************************************ ***********
consensus_13062#0 TTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTAGGTTGTAGCAGTTGGTCTG 600
consensus_13062#1 TTGGCTCAAGAAAGTGAAAGATGAAGGAGATTTTGAGGTTAGGTTGTAGCAGTTGGTTTG 275
******************************** ************************ **
consensus_13062#0 AACTGCTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGG 660
consensus_13062#1 AACTGCTTCATGTCCTCCTATCGAGCATTTCTATGTAAGGATGGGTATTAGCCTTTTAGG 335
************************************* **************** *****
consensus_13062#0 TGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTG 720
consensus_13062#1 TGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTG 395
************************************************************
consensus_13062#0 CTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTC 780
consensus_13062#1 CTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAAAAAAAAAAAAA---------- 445
************************************** * ***
consensus_13062#0 TGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGCAAAAATTGTTT 840
consensus_13062#1 ------------------------------------------------------------
consensus_13062#0 CTTGGATGCTGA 852
consensus_13062#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||