These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 852 fasta sequence [TATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC-GGGCGGCC-ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG-AAGGGCCGCGCCGCCGC-GGG-AGCGGGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT-GGTTTCG-TTGTTATTCAGAAG-TTATGTGTTCCAAGCCTA-TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA-GGTTGTAGCAGTTGGTCTGAACTG-CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG-TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGCAAAAATTGTTTCTTGGATGCTGA] [+] EMBL AU173347 [TATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGGCGGCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAGAAAGGGCCGCGCCGCCGC GGG AGCGGACCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAANGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGNATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACT ] [+] EMBL OSS2754A [ ATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCACGGGGNNCCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCCGCGCCGCCGC GGG AG GNGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCA ] [+] EMBL OSS3108A [ ATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGG GNCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCNGCGCCGCCGCGGGG AG GGGCCCGGCGGCGCGTCCCACGAGGTTCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATC ] [+] EMBL AK067551 [ CTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGGCGGCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCCGCGCCGCCGC GGG AGCGGGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGCAAAAATTGTTTCTTGGATGCTGA] [+] EMBL AU068672 [ ATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGGGGTCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCNGCGCCGCCGC GGGNAGCGTGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCNTGTTGGGTTTCGNTTGTTATTCAGAAGTTTATGTGTTCCAAGCCTATTTTGGTCAAATTCTACCTTTTGAGTTGGCTCAANAAAGTGAAAGATGAAGGAGATTCTGAGGTTAGGGTTGTAGCANTTGGTCTGAACTG ] [+] EMBL AU108924 [ ACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCGGCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCAC GGGGGNCC ACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCNGCGCCGCCGC GG AGCGNGCCCGGCGGCGCGTCCNACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTTAAATTCTACTTTTTGTGTTGNCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCATTTGGTCTGAACTGCCTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAGTTTGTGGATTTTAGAACAAATGTGATGTGCTATGATCAGTCAATTTt ] [+] EMBL AU068671 [ GGCCAACACGCTCGTCGCCAAGNTGCTCAGCTCCAAGACCGTGGTCCAG AAGGGCCGCGCCGCCGC GGG AGCGGGCCCGGCGGCGCNTCCNACGAGGATCGCCGAGTGCCTCATCGGCGACGAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGACAGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATAaaaaaaa ] [+] EMBL AU173348 [ TATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAa ] [+] EMBL BI795617 [ GGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTAAGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGC AAAATTGTTTCTaaaaaa ] [+] EMBL AU108925 [ TGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTT GGTTTCG TTGTTATTCAGAAG TTATGTGTTCCAAGCCTA TTTGGTCAAATTCTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAaaaa ] [+] EMBL AK058239 [ CAAGCCTA TTTGGTCAAATTCTACCTTTTGGGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTA GGTTGTAGCAGTTGGTCTGAACTG CTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAG TTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATT ] consensusID : consensus_13062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [AGAGGACGAGACAAGGGGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTTGGTTTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTTTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTTTGAGGTTAGGTTGTAGCAGTTGGTTTGAACTGCTTCATGTCCTCCTATCGAGCATTTCTATGTAAGGATGGGTATTAGCCTTTTAGGTGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAAAAAAAAAAAAA] [-] EMBL CA763418 [AGAGGACGAGACAAGGGGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGATAACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTTGGTTTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTTTACCTTTTGAGTTGGCTCAAGAAAGTGAAAGATGAAGGAGATTTTGAGGTTAGGTTGTAGCAGTTGGTTTGAACTGCTTCATGTCCTCCTATCGAGCATTTCTATGTAAGGATGGGTATTAGCCTTTTAGGTGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13062#0 TATCTCTATCCATTACTACTCTCCAGTGTTCTTTTTTCCGTACCCATGGCGGCGGCGGCG 60 consensus_13062#1 ------------------------------------------------------------ consensus_13062#0 GCGGCGGCGAAGAGGAAGCCGGTGTTCGTCAAGGTGGACCAGCTCAAGCCCGGCACGGGC 120 consensus_13062#1 ------------------------------------------------------------ consensus_13062#0 GGCCACACGCTCGTCGCCAAGGTGCTCAGCTCCAAGACCGTGGTCCAGAAGGGCCGCGCC 180 consensus_13062#1 ------------------------------------------------------------ consensus_13062#0 GCCGCGGGAGCGGGCCCGGCGGCGCGTCCCACGAGGATCGCCGAGTGCCTCATCGGCGAC 240 consensus_13062#1 ------------------------------------------------------------ consensus_13062#0 GAGACCGGCTGCATCCTGTTCACCGCCCGCAACGAGCAGGTTGACCTGATGAAGGCTGAC 300 consensus_13062#1 ------------------------------------------------------------ consensus_13062#0 AGCACTGTTATTATCCGCAATGCAAAAATTGATATGTTCAAAGGATCAATGAGGCTTGCT 360 consensus_13062#1 -----------------------AGAGGACGAGACA--AGGGGGATCAATGAGGCTTGCT 35 * * ** * ****************** consensus_13062#0 GTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGAT 420 consensus_13062#1 GTGGACAAATGGGGCCGCATTGAAGTGACTGAACCGGCAAGTTTCAACGTAAAGGAGGAT 95 ************************************************************ consensus_13062#0 AACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTTGGT 480 consensus_13062#1 AACAATCTCTCACTTGTGGAGTATGAACTTGTCAATGTTGAAGGGTGAGATCGTGTTGGT 155 ************************************************************ consensus_13062#0 TTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTCTACCTTTTGAG 540 consensus_13062#1 TTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTTTACCTTTTGAG 215 ************************************************ *********** consensus_13062#0 TTGGCTCAAGAAAGTGAAAGATGAAGGAGATTCTGAGGTTAGGTTGTAGCAGTTGGTCTG 600 consensus_13062#1 TTGGCTCAAGAAAGTGAAAGATGAAGGAGATTTTGAGGTTAGGTTGTAGCAGTTGGTTTG 275 ******************************** ************************ ** consensus_13062#0 AACTGCTTCATGTCCTCCTATCGAGCATTTCTATGTACGGATGGGTATTAGCCTATTAGG 660 consensus_13062#1 AACTGCTTCATGTCCTCCTATCGAGCATTTCTATGTAAGGATGGGTATTAGCCTTTTAGG 335 ************************************* **************** ***** consensus_13062#0 TGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTG 720 consensus_13062#1 TGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAGTCAATTTGCTG 395 ************************************************************ consensus_13062#0 CTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTC 780 consensus_13062#1 CTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAAAAAAAAAAAAA---------- 445 ************************************** * *** consensus_13062#0 TGATTCGAACCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGCAAAAATTGTTT 840 consensus_13062#1 ------------------------------------------------------------ consensus_13062#0 CTTGGATGCTGA 852 consensus_13062#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||