These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2366 fasta sequence [GAGTAGAAAGGTGGCGTGGTTTTGGGGTTCCAGAACCTTCTCGATCCCTCCTCCCCCTCTCCGCCTCCGCCTCCGCCCTCCTCCGCTCCGATCGCCGCCGGCTCGTCGCCG-----GTTTCATAAGCCATGTTCAAGAAGCATGTTGATGTAAAGGCTCTACAGCGTTTGTCGGGAGCTGACAAAAAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGATGCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTTTTACACTTAAGGGTGGTGAAGTCTCACGCTTCATACTGGGGGGTGCCGATCTGATGTTTCCTGGTATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTGGCCAGCCATGGTCAGTAAAGGTTCCTGGTAATCCTGCTCCAATTGCTGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATGGGATTCTGCTGATGGTCGCTATGTTCCAAATGAAGGATTTTATGAGGACATTGTTGTTGAAGATCGTAATTATGCTTCACCGTCTCAACCTGCTGATTCTTCTGAAGATCATGTAGAAGGCATGCATGACAGTACCATTGAAGGTGAAGAAGCTGCAGTTGATGTTTCTGAGAGCCATACCACAGATCATGACATCCACGTTGAGGCCATAGAAGATTTAACTGCTGGTGTGAGTGAGGTGAAATTGCCTGAAGATAATGCTACTGAGGAACCAACTGAGGAAAGGGAACATCAGAATTTGTCTACGGAAGAAATTGACTCTCTTTTAGATAAATGTCTTCTGCAAGCTTTACACACGAGTGTAAAAGATAAAGACCTTCCTATTCCTGGAAGTACATTGTGGTCAAATCACATACTCCCCTGCAGACCTACAGGTGTTACTCTGGATATTAAGAAGTCATCACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTTATTTCATCAAAAGAAGACAAGCATAAAAAGGAAGTCATGTTGCTTCGTATCAATCGTGGGCATCCAGATTACATGGCCTTTAAACCAGAAAAGAGGGTACAGGAGCCTGTTGTACAGCATGATAATGTTGTTGCTGAAGGTAGCAGCACGAAGCAACTGGAAGTAGCAGAAACTTATAAGCCAAGCTCTCATGTTAACCCCATATTTATGGCTGTTGGAGCGGACACGAGCAAGTACTATAGTGCATCAGAGGCATCTGACATAGTCTTCAGGTACGTTGAAAAGGAAAATTTGGTTAAACAAACAGACAAGGCCAAAGTAGTTTTGGATGTTGCATTATGCGACGCTCTCTACAAAGGAGCCATCAAAAAGGGTTCAGCATACCCAACCGAGATCCACAAGAGGGACCTGGGGTCAACATTTTTAAACCGAATGCAGATTCACCATAGAGTAGCAAGAGGGAACGAGGTGGTCATTCGCAAGGGCGCCATACGAACCATTCAGATCATGACAGAGAGAAGGCAAGGAAACAAGAAGATGACCCGGCTATCTGGATTGGAATGCTTCTTAATGGATCCTGACTCGTTAGCTTCTGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGACAAAACAAAGCGTTAGAGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGACCCTGAAGTATCTTCAGGGACAGCGCAGGAAGAGAATGCAGACCAATGCTTAACGATATCAGGATTGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCTCTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGTTTACAGAAAAATGAGTAGGGCTGTTCTGTGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTTGTAACGTTCTTTTGGTGCCGTGTTCATTCTCCTGAAAAAGAACCTTTTTTGTGTGAGATACGTGTTACGTTTCGTTAGTGACAGACAGGGTTTGACGCTTTTTAACATGGCATAGTGCTATGGTTAATTCAATACATGCTTTCATATTAAAGGA] [+] EMBL CF276740 [GAGTAGAAAGGTGGCGTGGTTTTGGGGTTCCAGAACCTTCTCGATCCCTCCTCCCCCTCTCCGCCTCCGCCTCCGCCCTCCTCCGCTCCGATCGCCGCCGGCTCGTCGCCG GTTTCATAAGCCATGTTCAAGAAGCATGTTGATGTAAAGGCTCTACAGCGTTTGTCGGGAGCTGACAAAAAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGATGCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTT ] [+] EMBL CB633434 [ GGGTCCCTTAACCTTCTCGATCCCTCCTCCCCCTCTCCGCCTCCGCCTCCGCCCTCCTCCGCTCCGATCGCCGCCGGCTCGTCGCCGGGAACGTTTCATAAGCCATGTTCAAGAAGCATGTTGATGTAAAGGCTCTACAGCGTTTGTCGGGAGCTGACAAAAAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGATGCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTTTTACACTTAAGGGTGGTGAAGTCTCACGCTTCATACTGGGGGGTGCCGATCTGATGTTTCCTGGTATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTGGCCAGCCATGGTCAGTAAAGGTTCCTGGGAATCCTGCTCCAATTGCTGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATGGGATTCTGCTGATGGTCGCTATGTTCCAAATGAAGGATTTTATGAGGACATTGTTGTTGAAGATCGTAATTATGCTTCACCGTCTCAACCTGCTGATTCTTCTGAAGATCATGTAGAAAGCATGCA ] [+] EMBL AK064926 [ AGAACCTTCTCGATCCCTCCTCCCCCTCTCCGCCTCCGCCTCCGCCCTCCTCCGCTCCGATCGCCGCCGGCTCGTCGCCG GTTTCATAAGCCATGTTCAAGAAGCATGTTGATGTAAAGGCTCTACAGCGTTTGTCGGGAGCTGACAAAAAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGATGCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTTTTACACTTAAGGGTGGTGAAGTCTCACGCTTCATACTGGGGGGTGCCGATCTGATGTTTCCTGGTATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTGGCCAGCCATGGTCAGTAAAGGTTCCTGGTAATCCTGCTCCAATTGCTGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATGGGATTCTGCTGATGGTCGCTATGTTCCAAATGAAGGATTTTATGAGGACATTGTTGTTGAAGATCGTAATTATGCTTCACCGTCTCAACCTGCTGATTCTTCTGAAGATCATGTAGAAGGCATGCATGACAGTACCATTGAAGGTGAAGAAGCTGCAGTTGATGTTTCTGAGAGCCATACCACAGATCATGACATCCACGTTGAGGCCATAGAAGATTTAACTGCTGGTGTGAGTGAGGTGAAATTGCCTGAAGATAATGCTACTGAGGAACCAACTGAGGAAAGGGAACATCAGAATTTGTCTACGGAAGAAATTGACTCTCTTTTAGATAAATGTCTTCTGCAAGCTTTACACACGAGTGTAAAAGATAAAGACCTTCCTATTCCTGGAAGTACATTGTGGTCAAATCACATACTCCCCTGCAGACCTACAGGTGTTACTCTGGATATTAAGAAGTCATCACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTTATTTCATCAAAAGAAGACAAGCATAAAAAGGAAGTCATGTTGCTTCGTATCAATCGTGGGCATCCAGATTACATGGCCTTTAAACCAGAAAAGAGGGTACAGGAGCCTGTTGTACAGCATGATAATGTTGTTGCTGAAGGTAGCAGCACGAAGCAACTGGAAGTAGCAGAAACTTATAAGCCAAGCTCTCATGTTAACCCCATATTTATGGCTGTTGGAGCGGACACGAGCAAGTACTATAGTGCATCAGAGGCATCTGACATAGTCTTCAGGTACGTTGAAAAGGAAAATTTGGTTAAACAAACAGACAAGGCCAAAGTAGTTTTGGATGTTGCATTATGCGACGCTCTCTACAAAGGAGCCATCAAAAAGGGTTCAGCATACCCAACCGAGATCCACAAGAGGGACCTGGGGTCAACATTTTTAAACCGAATGCAGATTCACCATAGAGTAGCAAGAGGGAGCGAGGTGGTCATTCGCAAGGGCGCCATACGAACCATTCAGATCATGACAGAGAGAAGGCAAGGAAACAAGAAGATGACCCGGCTATCTGGATTGGAATGCTTCTTAATGGATCCTGACTCGTTAGCTTCTGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGACAAAACAAAGCGTTAGGGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGAGCCTGAAGTATCTTCAGGGACAGCGCAGGAAGAGAATGCAGACCAATGCTTAACGATATCAGGATTGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCTCTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGTTTACAGAAAAATGAGTAGGGCTGTTC TGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTTGTAACGTTCTTTTGGTGCCGTGTTCATTCTCCTGAAAAAGCACCTTTTTTGTGTGAGATACGTGTTACGTTTCGTTAGTGACAGACAGGGTTTGACGCTTTTTAACATGGCATAGTGCTATGGTTAATTCAATAC ] [+] EMBL CB629730 [ AACCTTCTCTATCCCTCCTCCCCCTCTCCGCCTCCGCCTCCGCCCTCCTCCGCTCCGATCGCCGCCGGCTCGTCGCCG GTTTCATAAGCCATGTTCAAGAAGCATGTTGATGTAAAGGCTCTACAGCGTTTGTCGGGAGCTGACAAAAAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGATGCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTTTTACACTTAAGGGTGGTGAAGTCTCACGCTTCATACTGGGGGGTGCCGATCTGATGTTTCCTGGTATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTGGCCAGCCATGGTCAGTAAAGGTTCCTGGTAATCCTGCTCCAATTGCTGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATGGGATTCTGCTGATGGTCGCTATGTTCCAAATGAAGGATTTTATGAGGACATTGTTGTTGAAGATCGTAATTATGCTTCACCGTCTCAACCTGCTGATTCTTCTGAAGATCATGTAGAAGGCATGCATGACAGTACCATTGAAGGTGAAGAAGCTGCAGTT ] [+] EMBL CB676232 [ CTCGATCCCTCCTCCCCCTCTCCGCCTCCGCCTCCGCCCTCCTCCGCTCCGATCGCCGCCGGCTCGTCGCCG GTTTCATAAGCCATGTTCAAGAAGCATGTTGATGTAAAGGCTCTACAGCGTTTGTCGGGAGCTGACAAAAAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGATGCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTTTTACACTTAAGGGTGGTGAAGTCTCACGCTTCATACTGGGGGGTGCCGATCTGATGTTTCCTGGTATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTGGCCAGCCATGGTCAGTAAAGGTTCCTGGTAATCCTGCTCCAATTGCTGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAGGCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATGGGATTCTGCTGATGGTCGCTATGTTCCAAATGAAGGATTTTATGAGGACATTGTTGTTGAAGATCGTAATTATGCTTCACCGTCTCAACCTGCTGATTCTTCTG ] [-] EMBL CB633435 [ GCATCTGACATAGTCTTCAGGTACGTTGAAAAGGAAAATTTGGTTAAACAAACAGACAAGGCCAAAGTAGTTTTGGATGTTGCATTATGCGACGCTCTCTACAAAGGAGCCATCAAAAAGGGTTCAGCATACCCGACCGAGATCCACAAGAGGGACCTGGGGTCAACATTTTTAAACCGAATGCAGATTCACCATAGAGTAGCAAGAGGGAACGAGGTGGTCATTCGCAAGGGCGCCATACGAACCATTCAGATCATGACAGAGAGAAGGCAAGGAAACAAGAAGATGACCCGGCTATCTGGATTGGAATGCTTCTTAATGGATCCTGACTCGTTAGCTTCTGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGACAAAACAAAGCGTTAGAGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGACCCTGAAGTATCTTCAGGGACAGCGCAGGAAGAGAATGCAGACCAATGCTTAACGATATCAGGATTGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCTCTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGTTTACAGAAAAATGAGTAGGGCTGTTCTGTGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTAGAGACGTTCTTTTGGTGCCGTGTTCATTCTCCTGAATTTTAACGTTTTT ] [-] EMBL CB629731 [ TAAACCGAATGCAGATTCACCATAGAGTAGCAAGAGGGAACGAGGTGGTCATTCGCAAGGGCGCCATACGAACCATTCAGATCATGACAGAGAGAAGGCAAGGAAACAAGAAGATGACCCGGCTATCTGGATTGGAATGCTTCTTAATGGATCCTGACTCGTTAGCTTCTGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGACAAAACAAAGCGTTAGAGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGACCCTGAAGTATCTTCAGGGACAGCGCAGGAAGAGAATGCAGACCAATGCTTAACGATATCAGGATTGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCTCTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGTTTACAGAAAAATGAGTAGGGCTGTTCTGTGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTTGTAACGTTCTTTTGGTGCCGTGTTCATTCTCCTGAAAAAGAACCTTTTTTGTGTGAGATACGTGTTACGTTTCGTTAGTGACAGACAGGGTTTGACGCTTTTTAACATGGCGTAGTGCTATGGTTAATTCAATACATGCTTTCATATTAAAGGA] [+] EMBL CA765845 [ AAGTATCTTCAGGGACAGCGCAGGAAGGGAATGCAGACCAATGCTTAACGATATCAGGATTGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCTCTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGTTTACAGAAAAATGAGTAGGGCTGTTCTGTGACTTCTGTCTGAAATTTCGGTGTGTACCCGTTCCTTTTTTGTAACGTTCTTTTGGTGCCGTGTTCATTCTCCTGAAAAAGAACCTTTTTTGTGTGAGATACGTGTTACGTTTCGTTAGTGACAGACAGGGTTTGAC ] consensusID : consensus_13068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [ATTTTTAAACCGAATGCAGATTCACCATAGAGTAGCAAGAGGGAACGAGGTGGTCATTCGCAAGGGCGCCATACGAACCATTCAGATCATGACAGAGAGAAGGCAAGGAAACAAGAAGATGACCCGGCTATCTGGATTGGAATGCTTCTTAATGGATCCTGACTCGTTAGCTTCTGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGACAAAACAAAGCGTTAGAGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGAGCCTGAAGTATCTTCAGGGACAGCGCAGGAAGGGAATGCAGACCAATGCTTAACGATATCAGGATTGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCTCTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGGTTACAGAAAAATGAGTANGGCTGGTCTGNGACTTCTGTCTGAAATTTTGGTGNGTACCCCGTTCCTTTTTGTAACGGTCTTTTGGTGCCGGGGTCATTCTNCTGAAAAGAACCTTTTTGNGNGAAAAAAA] [+] EMBL CB096287 [ATTTTTAAACCGAATGCAGATTCACCATAGAGTAGCAAGAGGGAACGAGGTGGTCATTCGCAAGGGCGCCATACGAACCATTCAGATCATGACAGAGAGAAGGCAAGGAAACAAGAAGATGACCCGGCTATCTGGATTGGAATGCTTCTTAATGGATCCTGACTCGTTAGCTTCTGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGACAAAACAAAGCGTTAGAGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGAGCCTGAAGTATCTTCAGGGACAGCGCAGGAAGGGAATGCAGACCAATGCTTAACGATATCAGGATTGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCTCTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGGTTACAGAAAAATGAGTANGGCTGGTCTGNGACTTCTGTCTGAAATTTTGGTGNGTACCCCGTTCCTTTTTGTAACGGTCTTTTGGTGCCGGGGTCATTCTNCTGAAAAGAACCTTTTTGNGNGAAAAAAA] consensusID : consensus_13068#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CGGCTTTGGGGGAAAATTTTTAAAAGACCCCCCCCGAAGTTTGAGCCCAAAAAAGTTCTTTCAGCCCCCCACATTTGTTTCCCGTAAAAAAGGCCCCCGGGGTTTGGTTCAGGGGGGGTTTCAAAACCCTCAAAGCNNCCCTATTTCATTCGGGGTTCGAAAGGGTTAATAAGTTTTTGCAAACAAAAGGTTAAGGGCAGGCAAAACAGGCAGCTTTCAGTGCCGAAGAGCCTTAAGTTCTTAAGGGCAGCCAGGAAGGGAATCCAGCCCATGCTTAACGAAATCAGGATGTTATCTGTGGCTGCATCATCAGAGAAAATATGAGAAGATACTCTTCTCACCACTCTGGTTNTTATGCTTGAAAAATACTTTTATCCTNTTTGTGTTTNACAGAAAAATGAGTAGGGCTGTTCTGTGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTTGTAACGTTCTTTTGGTGCCGTGTTCATTCTTCTGAAAAAGAACCTTTTTTGTGTGAGATACGTGTTACGTTTCGTTAGTGACAGACAGGGTTTGACGCTTTTTAACATGGCATAGTGCTATGGTTAATTCAATACATGCTTTCATATAAAAAAAAAAAAAAAAA] [-] EMBL CA760647 [CGGCTTTGGGGGAAAATTTTTAAAAGACCCCCCCCGAAGTTTGAGCCCAAAAAAGTTCTTTCAGCCCCCCACATTTGTTTCCCGTAAAAAAGGCCCCCGGGGTTTGGTTCAGGGGGGGTTTCAAAACCCTCAAAGCNNCCCTATTTCATTCGGGGTTCGAAAGGGTTAATAAGTTTTTGCAAACAAAAGGTTAAGGGCAGGCAAAACAGGCAGCTTTCAGTGCCGAAGAGCCTTAAGTTCTTAAGGGCAGCCAGGAAGGGAATCCAGCCCATGCTTAACGAAATCAGGATGTTATCTGTGGCTGCATCATCAGAGAAAATATGAGAAGATACTCTTCTCACCACTCTGGTTNTTATGCTTGAAAAATACTTTTATCCTNTTTGTGTTTNACAGAAAAATGAGTAGGGCTGTTCTGTGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTTGTAACGTTCTTTTGGTGCCGTGTTCATTCTTCTGAAAAAGAACCTTTTTTGTGTGAGATACGTGTTACGTTTCGTTAGTGACAGACAGGGTTTGACGCTTTTTAACATGGCATAGTGCTATGGTTAATTCAATACATGCTTTCATATAAAAAAAAAAAAAAAAA] consensusID : consensus_13068#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [NGNNTGNCNGGGNCTNCTACAGCGTTTGTCGGGAGCTGACAAAAAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGATGCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTTTTACACTTAAGGGTNGTGAAGTCTCACGCTTCATACTTGGGGGGTGCCGATCTGATGTTTCCTGGGNATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTNGCCAGCCATTGGT] [+] EMBL C26228 [NGNNTGNCNGGGNCTNCTACAGCGTTTGTCGGGAGCTGACAAAAAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGATGCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTTTTACACTTAAGGGTNGTGAAGTCTCACGCTTCATACTTGGGGGGTGCCGATCTGATGTTTCCTGGGNATTAGCATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTNGCCAGCCATTGGT] consensusID : consensus_13068#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [GGAGTAGGGCTGTTATTACTTCTGTCTGAAATTTTGATATGTACCCGTTCCTTTTTTGTAACGTTCTTTTGGTGCCGTGTACATTCTCCTGAAAAAGCACCTTTTTTGTGTGAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF299970 [GGAGTAGGGCTGTTATTACTTCTGTCTGAAATTTTGATATGTACCCGTTCCTTTTTTGTAACGTTCTTTTGGTGCCGTGTACATTCTCCTGAAAAAGCACCTTTTTTGTGTGAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GAGTAGAAAGGTGGCGTGGTTTTGGGGTTCCAGAACCTTCTCGATCCCTCCTCCCCCTCT 60 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 CCGCCTCCGCCTCCGCCCTCCTCCGCTCCGATCGCCGCCGGCTCGTCGCCGGTTTCATAA 120 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GCCATGTTCAAGAAGCATGTTGATGTAAAGGCTCTACAGCGTTTGTCGGGAGCTGACAAA 180 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 AAGAAGCTCAGAAGAACTGCCAAGGAAAGGTTCCCACAAGCATCTGATGCTGACCTTGAT 240 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GCCATCCTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTA 300 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 TATGGCATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTG 360 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 TTTCCAACAGTTTATGCACTCTGGAAGGTTCCCGATCTGTTGCCTGCTTTTACACTTAAG 420 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GGTGGTGAAGTCTCACGCTTCATACTGGGGGGTGCCGATCTGATGTTTCCTGGTATTAGC 480 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 ATACCCCCAGAAGGGCTTCCTTCCTTTCAACCTGGCCAGCCATGGTCAGTAAAGGTTCCT 540 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GGTAATCCTGCTCCAATTGCTGTTGGGGCCACAACTATGAGCAGTAATGAAGCCTTAAAG 600 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GCAGGGTTACGTGGCAAGGCTTTGCGGATTACTCACTACTTTAAGGATTCATTATGGGAT 660 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 TCTGCTGATGGTCGCTATGTTCCAAATGAAGGATTTTATGAGGACATTGTTGTTGAAGAT 720 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 CGTAATTATGCTTCACCGTCTCAACCTGCTGATTCTTCTGAAGATCATGTAGAAGGCATG 780 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 CATGACAGTACCATTGAAGGTGAAGAAGCTGCAGTTGATGTTTCTGAGAGCCATACCACA 840 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GATCATGACATCCACGTTGAGGCCATAGAAGATTTAACTGCTGGTGTGAGTGAGGTGAAA 900 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 TTGCCTGAAGATAATGCTACTGAGGAACCAACTGAGGAAAGGGAACATCAGAATTTGTCT 960 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 ACGGAAGAAATTGACTCTCTTTTAGATAAATGTCTTCTGCAAGCTTTACACACGAGTGTA 1020 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 AAAGATAAAGACCTTCCTATTCCTGGAAGTACATTGTGGTCAAATCACATACTCCCCTGC 1080 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 AGACCTACAGGTGTTACTCTGGATATTAAGAAGTCATCACACAAAAAGCTATCCAAGTGG 1140 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 TTGCAATCAAAATCTTCCGCTGGCCTTATTTCATCAAAAGAAGACAAGCATAAAAAGGAA 1200 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GTCATGTTGCTTCGTATCAATCGTGGGCATCCAGATTACATGGCCTTTAAACCAGAAAAG 1260 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 AGGGTACAGGAGCCTGTTGTACAGCATGATAATGTTGTTGCTGAAGGTAGCAGCACGAAG 1320 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 CAACTGGAAGTAGCAGAAACTTATAAGCCAAGCTCTCATGTTAACCCCATATTTATGGCT 1380 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GTTGGAGCGGACACGAGCAAGTACTATAGTGCATCAGAGGCATCTGACATAGTCTTCAGG 1440 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 TACGTTGAAAAGGAAAATTTGGTTAAACAAACAGACAAGGCCAAAGTAGTTTTGGATGTT 1500 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GCATTATGCGACGCTCTCTACAAAGGAGCCATCAAAAAGGGTTCAGCATACCCAACCGAG 1560 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 --------------------------ATTTTTAAACCGAATGCAGATTCACCATAGAGTA 34 consensus_13068#0 ATCCACAAGAGGGACCTGGGGTCAACATTTTTAAACCGAATGCAGATTCACCATAGAGTA 1620 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ------------------------------------------------------------ consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 GCAAGAGGGAACGAGGTGGTCATTCGCAAGGGCGCCATACGAACCATTCAGATCATGACA 94 consensus_13068#0 GCAAGAGGGAACGAGGTGGTCATTCGCAAGGGCGCCATACGAACCATTCAGATCATGACA 1680 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 ----------------------------------------------CGGCTTTGGGGGAA 14 consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 GAGAGAAGGCAAGGAAACAAGAAGATGACCCGGCTATCTGGATTGGAATGCTTCTTAATG 154 consensus_13068#0 GAGAGAAGGCAAGGAAACAAGAAGATGACCCGGCTATCTGGATTGGAATGCTTCTTAATG 1740 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 AATTTTTAAAAGACCCCCCCCGAAGTTTGAGCCCAAAAAAGTTCTTTCAGCCCCCCACAT 74 consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 GATCCTGACTCGTTAGCTTCTGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCT 214 consensus_13068#0 GATCCTGACTCGTTAGCTTCTGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCT 1800 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 TTGTTTCCCGTAAAAAAGGCCC----CCGGGGTTTGGTTCAGGGGGGGTT--TCAAAACC 128 consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 GAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGAC 274 consensus_13068#0 GAGCTTCCAGGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGAC 1860 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 CTCAAAGCNNCCCTATTTCATTC-----GGGGTTCGAAAGGGTTAAT--AAGTTTTTGC- 180 consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 CTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGAC 334 consensus_13068#0 CTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGAGGTTCTTGAC 1920 consensus_13068#3 -------NGNNTGNCNGGGNCTNCTACAGCGTTTGTCGGGAGCTGAC--AAAAAGAAGCT 51 consensus_13068#2 -AAACAAAAGGTTAAGGGCAGGCA---AAACAGGCAG-CTTTCAGTGCCGAAGAGCCTTA 235 consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 AAAACAAAGCGTTAGAGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGAGCCTG 394 consensus_13068#0 AAAACAAAGCGTTAGAGGACAGGACAGAAGCAGGCAGACTCTCAGTGCCGGAGGACCCTG 1980 consensus_13068#3 CAGAAGAACTGCCAAGGAAAGGTTC--CCACAAGCATCTGATGCTGACCTTGATGCCATC 109 consensus_13068#2 AG---TTCTTAAGGGCAGC-CAGGAAGGGAATCCAGCCCA-TGCTTAACGAAATCAGGAT 290 consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 AAGTATCTTCAGGGACAGCGCAGGAAGGGAATGCAGACCAATGCTTAACGATATCAGGAT 454 consensus_13068#0 AAGTATCTTCAGGGACAGCGCAGGAAGAGAATGCAGACCAATGCTTAACGATATCAGGAT 2040 consensus_13068#3 CTTCCTCCCAAGGTTGAGGTAACAGTTGCTAAGTACCCAAATAGGGTTCTTGTATATGGC 169 consensus_13068#2 GTTAT-CTGTGGCTGC-ATCATCAGA-GAAAATATGAGAAGATAC-TCTTCTCACCAC-T 345 consensus_13068#4 ------------------------------------------------------------ consensus_13068#1 TGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCT 514 consensus_13068#0 TGTATTCTGTGACTGCCATCATCAGAAGAAATTATGAGAAGATACCTCTTCTCACCACCT 2100 consensus_13068#3 ATAGAGGGAGAGTTCCCAATGCTTTTCGACATTGATGGAAGAGGCCATGAGCTGTTTCCA 229 consensus_13068#2 CTGGTTNTTATGCTTGAAAAATACTTTTATCCTNTTTGTGTTTNACAGAAAAATGAGTAG 405 consensus_13068#4 -----------------------------------------------------GGAGTAG 7 consensus_13068#1 CTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGGTTACAGAAAAATGAGTAN 574 consensus_13068#0 CTGGTTTTTATGCTTGGAAAATACTTTTATCCTTTTTTGTGTTTACAGAAAAATGAGTAG 2160 consensus_13068#3 ACAGTTTATGCACTCTGGAAG-GTTCCCGATCTGTTGCCTGCTTTTACACTTAAGGGTNG 288 * ** consensus_13068#2 GGCTGTTCTGTGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTTGTAACGTT 465 consensus_13068#4 GGCTGTT--ATTACTTCTGTCTGAAATTTTGATATGTACCCGTTCCTTTTTTGTAACGTT 65 consensus_13068#1 GGCTGGTCTGNGACTTCTGTCTGAAATTTTGGTGNGTACCCCGTTCCTTTTTGTAACGGT 634 consensus_13068#0 GGCTGTTCTGTGACTTCTGTCTGAAATTTTGGTGTGTACCCGTTCCTTTTTTGTAACGTT 2220 consensus_13068#3 TGAAGTCTCACGCTTCATACTTGGGGGGTGCCGATCTGATGTTTCCTGGGNATTAGCATA 348 * * * * ** * * * * ** * consensus_13068#2 CTTTTGGTGCCGTGTTCATTCTTCTGAAAAAGAACCTTTTTTGTGTGAGATACGTGTTAC 525 consensus_13068#4 CTTTTGGTGCCGTGTACATTCTCCTGAAAAAGCACCTTTTTTGTGTGAGATAAAAAAAAA 125 consensus_13068#1 CTTTTGGTGCCGGGGTCATTCTNCTGAAAAG--AACCTTTTTGNGNGAAAAAAA------ 686 consensus_13068#0 CTTTTGGTGCCGTGTTCATTCTCCTGAAAAAGAACCTTTTTTGTGTGAGATACGTGTTAC 2280 consensus_13068#3 CCCCCAGAAGGGCTTCCTTCCTTTCAACCTNGCCAGCCATTGGT---------------- 392 * * * * * ** * ** * consensus_13068#2 GTTTCGTTAGTGACAGACAGGGTTTGACGCTTTTTAACATGGCATAGTGCTATGGTTAAT 585 consensus_13068#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 159 consensus_13068#1 ------------------------------------------------------------ consensus_13068#0 GTTTCGTTAGTGACAGACAGGGTTTGACGCTTTTTAACATGGCATAGTGCTATGGTTAAT 2340 consensus_13068#3 ------------------------------------------------------------ consensus_13068#2 TCAATACATGCTTTCATATAAAAAAAAAAAAAAAAA 621 consensus_13068#4 ------------------------------------ consensus_13068#1 ------------------------------------ consensus_13068#0 TCAATACATGCTTTCATATTAAAGGA---------- 2366 consensus_13068#3 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||