These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence [GTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATAGGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGATATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAGGGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTGATGATTCTGGAGAAATTAAGAGCTCATATCGGAAAATACATCTGTTTGATGT] [+] EMBL CB668655 [GTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATAGGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGATATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAGGGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTGATGATTCTGGAGAAATTAAGAGCTCATATCGGAAAATACATCTGTTTGATGT] consensusID : consensus_1308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [CGAATTCGGCACGAGGCTGACATGCGTGCCTTTAAAAGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACAGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATACGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGATATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAGGGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTG] [+] EMBL CB668785 [CGAATTCGGCACGAGGCTGACATGCGTGCCTTTAAAAGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACAGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATACGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGATATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAGGGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1308#0 -------------------------GTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGC 35 consensus_1308#1 CGAATTCGGCACGAGGCTGACATGCGTGCCTTTAAAAGGGTTCTGAAACCTGGGATGCGC 60 **** * * *********************** consensus_1308#0 AAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCT 95 consensus_1308#1 AAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCT 120 ************************************************************ consensus_1308#0 GTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGA 155 consensus_1308#1 GTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGA 180 ************************************************************ consensus_1308#0 GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCG 215 consensus_1308#1 GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCG 240 ************************************************************ consensus_1308#0 TTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCT 275 consensus_1308#1 TTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCT 300 ************************************************************ consensus_1308#0 CCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGA 335 consensus_1308#1 CCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGA 360 ************************************************************ consensus_1308#0 TTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACG 395 consensus_1308#1 TTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACG 420 ************************************************************ consensus_1308#0 GCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGG 455 consensus_1308#1 GCGCGGCTGCTCCGGTGAGCCGCGCCACAGAATCGGGAGCTCCAAGTGGGCCATTTTTGG 480 **************************** ******************************* consensus_1308#0 TAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATAGGC 515 consensus_1308#1 TAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATACGC 540 ********************************************************* ** consensus_1308#0 TCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGA 575 consensus_1308#1 TCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGA 600 ************************************************************ consensus_1308#0 TATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAG 635 consensus_1308#1 TATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAG 660 ************************************************************ consensus_1308#0 GGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTGATGATTCTGGAGAAATT 695 consensus_1308#1 GGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTG----------------- 703 ******************************************* consensus_1308#0 AAGAGCTCATATCGGAAAATACATCTGTTTGATGT 730 consensus_1308#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||