These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1358 fasta sequence [TAAACGAAGAACAAACATACATATATAGCAGCCAGTGGCATAATTAGCCGTGAAGCAGCCCAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGGACGACCTTGCACCGTTTCTTGAACGGCAGCGACGACCGGTCGACGTCGGCTCTCTTCTCCTTCTTCACCTTCGGCTGCGCAGCCGCCACCGCAGCGGCGCCGCTATGTGCGGCCGCCTTGGGGCCGGCGGCGTTGGGGGACGCTGGTAGTCCGGAGGCCATCATCGCCCGCCGCGCCTTCCTCTGCCTGATGCCGCACGCGTTGCAAAGCGACTTGGGGCCGCACGGGCCACTCCTCCACAAGGGAGTCTTGGTGGTGTTGCAGTCGGAGCACACCCTAATCACGCCAAAAGCTTGGCCCATGGCGCCGCCATGGCCGTGATCCTCGTACGCCTGCGCCGGCCTCCTCCTCGGCTTCTTCGGCGCCACCGTCGTCGCAGCCCCGCCAGTGACACCGGACGACGGCTCACCCATCTTCCTCGTGATCTTCATCTTGGCCGCTGGCACCGCGCTCCACTTGCCGCCGGCGACGACCTTGGCTAACCCGCAGCTCGCCTGCAGCTTCTCGGTATCGTATGGATCGAACTGCGACCGCTCGATCATGTCGTCGCGGATGCTCTTGACGGTCGGGAACGGCGTCGCAAAGATGCCAGCGGATGATCCTCCAATCATATTTTGGGGCTCAAGCATGGCTTGATGCTG] [+] EMBL CB675683 [TAAACGAAGAACAAACATACATATATAGCAGCCAGTGGCATAATTAGCCGTGAAGCAGCCCAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGGACGACCTTGCACCGTTTCTTGAACG ] [+] EMBL CB685904 [ AAACGAAGAACAAACATACATATATAGCAGCCAGTGGCATAATTAGCCGTGAAGCAGCCCAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGG ] [+] EMBL CB620317 [ ACGAAGAACAAACATACATATATAGCAGCCAGCGTTATAATTAGCCGTGAAGCAGCCCAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGGCGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGTCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACAACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGGACGGCCTTGCACCGTTTCTTGAACGGCAGCGACGACCGGTCGACGTCGGCTCTCTTCTCCTTCTTCACCTTCGGCTGCGCAGCCGCCACCGCAGCGGCGC ] [+] EMBL CB654126 [ TAGCAGCCAGTGGCATAATTAGCCGTGAAGCACCCTAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGGACGACCTTGCACCGTTTCTTGAACGGCAGCGACGACCGGTCGACGTCGGCTCTCTTCTCCTTCTTCACCTTCGGCTGCGCAGCCGCCACCGCAGCGGCGCCGCTATGTGCGGCCG ] [-] EMBL CB685903 [ CATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGGACGACCTTGCACCGTTTCTTGAACGGCAGCGACGACCGGTCGACGTCGGCTCTCTTCTCCTTCTTCACCTTCGGCTGCGCAGCCGCCACCGCAGCGGCGCCGCTATGTGCGGCCGCCTTGGGGCCGGCGGCGTTGGGGGACGCTGGTAGTCCGGAGGCCATCATCGCCCGCCGCGCCTTCCTCTGCCTGATGCCGCACGCGTTGCAAAGCGACTTGGGGCCGCACGGGCCACTCCTCCACAAGGGAGTCTTGGTGGTGTTGCAGTCGGAGCACACCCTAATCACGCCAAAAGCTTGGCCCATGGCGCCGCCATGGCCGTGATCCTCGTACGCCTGCGCCGGCCTCCTCCTCGGCTTCTTCGGCGCCACCGTCGTCGCAGCCCCGCCAGTGACACCGGACGACGGCTCACCCATCTTCCTCGTGATCTTCATCTTGGCCGCTGGCACCGCGCTCCACTTGCCGCCGGCGACGACCTTGGCTAACCCGCAGCTCGCCTGCAGCTTCTCGGTATCGTATGGATCGAACTGCGACCGCTCGATCATGTCGTCGCGGATGCTCTTGACGGTCGGGAACGGCGTCGCAAAGATGCCAGCGGATGATCCTCCAATCATATTTTGGGGCTCAAGCATGGCTTGATGCTG] [-] EMBL CB680086 [ GAGTCTTGGTGGTGTTGCAGTCGGAGCACACCCTAATCACGCCAAAAGCTTGGCCCATGGCGCCGCCATGGCCGTGATCCTCGTACGCCTGCGCCGGCCTCCTCCTCGGCTTCTTCGGCGCCACCGTCGTCGCAGCCCCGCCAGTGACACCGGACGACGGCTCACCCATCTTCCTCGTGATCTTCATCTTGGCCGCTGGCACCGCGCTCCACTTGCCGCCGGCGACGACCTTGGCTAACCCGCAGCTCGCCTGCAGCTTCTCGGTATCGTATGGATCGAACTGCGACCGCTCGATCATGTCGTCGCGGATGCTCTTGACGGTCGGGAACGGCGTCGCAAAGATGCCAGCGGATGATCCTCCAATCATATTTTGGGGCTCAAGC ] consensusID : consensus_13083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1200 fasta sequence [CAGCCAGTGGCATAATTAGCCGTGAAGCAGCCCAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGCCGCTATGTGCGGCCGCCTTGGGGCCGGCGGCGTTGGGGGACGCTGGTAGTCCGGAGGCCATCATCGCCCGCCGCGCCTTCCTCTGCCTGATGCCGCACGCGTTGCAAAGCGACTTGGGGCCGCACGGGCCACTCCTCCACAAGGGAGTCTTGGTGGTGTTGCAGTCGGAGCACACCCTAATCACGCCAAAAGCTTGGCCCATGGCGCCGCCATGGCCGTGATCCTCGTACGCCTGCGCCGGCCTCCTCCTCGGCTTCTTCGGCGCCACCGTCGTCGCAGCCCCGCCAGTGACACCGGACGACGGCTCACCCATCTTCCTCGTGATCTTCATCTTGGCCGCTGGCACCGCGCTCCACTTGCCGCCGGCGACGACCTTGGCTAACCCGCAGCTCGCCTGCAGCTTCTCGGTATCGTATGGATCGAACTGCGACCGCTCGATCATGTCGTCGCGGATGCTCTTGACGGTCGGGAACGGCGTCGCAAAGATGCCAGCGGATGATCCTCCAATCATATTTTGGGGCTCAAGCATGCCTTGATGCTG] [-] EMBL AK069851 [CAGCCAGTGGCATAATTAGCCGTGAAGCAGCCCAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGCCGCTATGTGCGGCCGCCTTGGGGCCGGCGGCGTTGGGGGACGCTGGTAGTCCGGAGGCCATCATCGCCCGCCGCGCCTTCCTCTGCCTGATGCCGCACGCGTTGCAAAGCGACTTGGGGCCGCACGGGCCACTCCTCCACAAGGGAGTCTTGGTGGTGTTGCAGTCGGAGCACACCCTAATCACGCCAAAAGCTTGGCCCATGGCGCCGCCATGGCCGTGATCCTCGTACGCCTGCGCCGGCCTCCTCCTCGGCTTCTTCGGCGCCACCGTCGTCGCAGCCCCGCCAGTGACACCGGACGACGGCTCACCCATCTTCCTCGTGATCTTCATCTTGGCCGCTGGCACCGCGCTCCACTTGCCGCCGGCGACGACCTTGGCTAACCCGCAGCTCGCCTGCAGCTTCTCGGTATCGTATGGATCGAACTGCGACCGCTCGATCATGTCGTCGCGGATGCTCTTGACGGTCGGGAACGGCGTCGCAAAGATGCCAGCGGATGATCCTCCAATCATATTTTGGGGCTCAAGC ] [-] EMBL CB685884 [ AGTGACACCGGCCGACGGCTCACCCATCTTCCTCGTGATCTTCATCTTGGCCGCAGGCACCGCGCTCCACTTGCCGCCGGCGACGACCTTGGCTAACCCGCAGCTCGCCTGCAGCTTCTCGGTATCGTATGGATCGAGCTGCGGCCGCTCGATCATGTCGTCGCGGATGCTCTTGACGGTCGGGAACGGCGTCGCAAAGATGCCAGCGGATGATCCTCCAATCATATTTTGGGGCTCAAGCATGCCTTGATGCTG] consensusID : consensus_13083#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 965 fasta sequence [ATACATATATAGCAGCCAGTGGCATAATTAGCCGTGAAGCAGCCCAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGCTGCTGCTGTGTCAAGTGATGGTCTGAACCATAGCTTAGAGTGGTGCTGTCGCTAGGGCTGCTGCTGCTGCTTCTTCTACTGATCACAAAGGGGAATAAGACTGGGGGATCCTTAGGCTGCAGGGAGAAGGCTTGGAAGTGGCCTTGGTGATGATCCTGGTGGTGATGGTGGTGCTCCCCCTCCATGAGAGGGAGAGCAGCTGAGAGCTGACTCATGTAGATGGTAGACATGAGAGGCAGCAACTGCCTAGCTACTAACTAGATCTCTCTAGCTAGTTTGCGAGTACAGATATTGGATAAACTCGCAGAGATCGATCAGGATGAGACCGCGAGGAAGATGAGAGAGACGATGGTACGCTTCGCGCGACGAGTGTTGATGCGGTTGGAGGGGCAATTTTGCGAGGTCCA] [-] EMBL AK068715 [ATACATATATAGCAGCCAGTGGCATAATTAGCCGTGAAGCAGCCCAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGCTGCTGCTGTGTCAAGTGATGGTCTGAACCATAGCTTAGAGTGGTGCTGTCGCTAGGGCTGCTGCTGCTGCTTCTTCTACTGATCACAAAGGGGAATAAGACTGGGGGATCCTTAGGCTGCAGGGAGAAGGCTTGGAAGTGGCCTTGGTGATGATCCTGGTGGTGATGGTGGTGCTCCCCCTCCATGAGAGGGAGAGCAGCTGAGAGCTGACTCATGTAGATGGTAGACATGAGAGGCAGCAACTGCCTAGCTACTAACTAGATCTCTCTAGCTAGTTTGCGAGTACAGATATTGGATAAACTCGCAGAGATCGATCAGGATGAGACCGCGAGGAAGATGAGAGAGACGATGGTACGCTTCGCGCGACGAGTGTTGATGCGGTTGGAGGGGCAATTTTGCGAGGTCCA] [-] EMBL CB675682 [ ATGGTCTGAACCATAGCTTAGAGTGGTGCTGTCGCTAGGGCTGCTGCTGCTGCTTCTTCTACTGATCACAAAGGGGAATAAGACTGGGGGATCCTTAGGCTGCAGGGAGAAGGCTTGGAAGTGGCCTTGGTGATGATCCTGGTGGTGATGGTGGTGCTCCCCCTCCATGAGAGGGAGAGCAGCTGAGAGCTGACTCATGTAGATGGTAGACATGAGAGGCAGCAACTGCCTAGCTACTAACTAGATCTCTCTAGCTAGTTTGCGAGTACAGATATTGGATAAACTCGCAGAGATCGATCAGGATGAGACCGCGAGGAAGATGAGAGAGACGATGGTACGCTTCGCGCGACGAGTGTTGATGCGGTTGGAGGGG ] [-] EMBL CB620316 [ ATGGTCTGAACCATAGCTTAGAGTGGTGCTGTCGCTAGGGCTGCTGCTGCTGCTTCTTCTATTGATCACAAAGGGGAATAAGACTGGGGGATCCTTAGGCTGCAGGGAGAAGGCTTGGAAGTGGCCTTGGTGATGATCC TGGTGGTGCTCCCCCTCCATGAGAGGGAGAGCAGCTGAGAGCTGACTCATGTAGATGGTAGACATGAGAGGCAGCAACTGCCTAGCTACTAACTAGATCTCTCTAGCTAGTTTGCGAGTACAGATATTGGATAAACTCGCAGAGATCGATCAGGATGAGACCGCGAGGAAGATGAGAGAGACGATGGTACGCTTCGCGCGACGAGTGTTGATTCGAAGGGAGGG ] consensusID : consensus_13083#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence [TTTCTTTAAAGATAGCAGCCAGTGGCATAATTAGCCGTGAAGCCTTCCAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGGACGACCTTGCACCGTTTCTTGAACGGCAGCGACGACCGGTCGACGTCGGCTCTCTTCTCCTTCTTCACCTTCGGCTGCGCAGCCGCCACCGCAGCGGCGCCGCTATGTGCGGCCGCCTTGGGGCCGGC] [+] EMBL CB680087 [TTTCTTTAAAGATAGCAGCCAGTGGCATAATTAGCCGTGAAGCCTTCCAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACACTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCTCTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACAAGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACAGGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTCTAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTTTCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATCTCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAGGCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCACCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCATGGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGGACGACCTTGCACCGTTTCTTGAACGGCAGCGACGACCGGTCGACGTCGGCTCTCTTCTCCTTCTTCACCTTCGGCTGCGCAGCCGCCACCGCAGCGGCGCCGCTATGTGCGGCCGCCTTGGGGCCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13083#0 TAAACGAAGAACAAACATACATATATAGCAGCCAGTGGCATAATTAGCCGTGAAGCAGCC 60 consensus_13083#1 ----------------------------CAGCCAGTGGCATAATTAGCCGTGAAGCAGCC 32 consensus_13083#3 -------------TTTCTTTAAAGATAGCAGCCAGTGGCATAATTAGCCGTGAAGCCTTC 47 consensus_13083#2 ----------------ATACATATATAGCAGCCAGTGGCATAATTAGCCGTGAAGCAGCC 44 **************************** * consensus_13083#0 CAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACA 120 consensus_13083#1 CAAAAA-GCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACA 91 consensus_13083#3 CAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACA 107 consensus_13083#2 CAAAAAAGCTTACTCCAAATTGAACTCACAGTACAGTAAATCTTACCTAGCTAGCTCACA 104 ****** ***************************************************** consensus_13083#0 CTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCT 180 consensus_13083#1 CTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCT 151 consensus_13083#3 CTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCT 167 consensus_13083#2 CTTTTCTCTTAATTATTCTTTCTCCTCTAATCTCCTCTTGATGTTTCTACCTCACTCTCT 164 ************************************************************ consensus_13083#0 CTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACA 240 consensus_13083#1 CTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACA 211 consensus_13083#3 CTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACA 227 consensus_13083#2 CTCTCACTCTCTAGTACAGTGCACAAAGTAACAGAGATCACAAGACTCGAACAGGAAACA 224 ************************************************************ consensus_13083#0 AGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACA 300 consensus_13083#1 AGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACA 271 consensus_13083#3 AGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACA 287 consensus_13083#2 AGACGCCAAGAGACATTCCAACTGGGGGGCAGTGTACGATCGATCGAGCGAGCAAGAACA 284 ************************************************************ consensus_13083#0 GGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTC 360 consensus_13083#1 GGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTC 331 consensus_13083#3 GGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTC 347 consensus_13083#2 GGCTAACGCACTAGCTGCAAAAAGCCTGCACCTCTCTCCATCTCCATCGATTGGTCTCTC 344 ************************************************************ consensus_13083#0 TAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTT 420 consensus_13083#1 TAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTT 391 consensus_13083#3 TAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTT 407 consensus_13083#2 TAGCTTGGTGCCAATCGATCGATCGATGGATGCATGCAGAGATGAAGTATAGCTTTTCTT 404 ************************************************************ consensus_13083#0 TCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATC 480 consensus_13083#1 TCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATC 451 consensus_13083#3 TCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATC 467 consensus_13083#2 TCTCAGCTCCGGACAAGCCCGCAGGACAGCGTCATGAGCAGCATGGCGGCGTCAGTGATC 464 ************************************************************ consensus_13083#0 TCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAG 540 consensus_13083#1 TCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAG 511 consensus_13083#3 TCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAG 527 consensus_13083#2 TCGTCCTGCACCGCCGCCGCGAAGCCGGGAGCCACCGGTGACGGCCGGAAGCTGCAGGAG 524 ************************************************************ consensus_13083#0 GCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCA 600 consensus_13083#1 GCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCA 571 consensus_13083#3 GCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTGAGCCCGATGCTGTCGACGAGAGTACCA 587 consensus_13083#2 GCGGTGGCGGCGGCATGGGTCTTGCTCCAGCTG---CTGCTGCTGT-GTCAAG--TGATG 578 ********************************* * * ****** * * ** * consensus_13083#0 CCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCA-T 659 consensus_13083#1 CCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCA-T 630 consensus_13083#3 CCCCTCGTCGTCGGCGCCGGGGGCGGGGCGACGGTGGCGGACTCGGCCGTCTCCTCCA-T 646 consensus_13083#2 GTCTGAACCATAGCTTAGAGTGGTGCTGTCGCTAGGGCTGCTGCTGCTGCTTCTTCTACT 638 * * * * * ** * * * *** * * ** * ** ** * * consensus_13083#0 GGCAGCTGCGGCGGCTGCGTTTGTGGCGGCGGGCAGCGTTTGATGATCCTCGACCTGGAC 719 consensus_13083#1 GGCAGCTGCGGCGGCTGCGTTTGTGGCG-------------------------------- 658 consensus_13083#3 GGCAGCTGCGGCGGCTGCGTTTGTGGCGGC------------------------------ 676 consensus_13083#2 GATCACAAAGGGGAATAAGACTGGGGGATCC----------------------------- 669 * * ** * * * ** ** consensus_13083#0 GACCTTGCACCGTTTCTTGAACGGCAGCGACGACCGGTCGACGTCGGCTCTCTTCTCCTT 779 consensus_13083#1 ------------------------------------------------------------ consensus_13083#3 ------------------------------------------------------------ consensus_13083#2 ------------------------------------------------------------ consensus_13083#0 CTTCACCTTCGGCTGCGCAGCCGCCACCGCAGCGGCGCCGCTATGTGCGGCCGCCTTGGG 839 consensus_13083#1 -------------------------------------CCGCTATGTGCGGCCGCCTTGGG 681 consensus_13083#3 -------------------------------------GGGCAGCGTTTGATGATCCTCGA 699 consensus_13083#2 -----------------------------------TTAGGCTGCAGGGAGAAGGCTTGGA 694 ** * * * consensus_13083#0 GCCGG-CGGCGTTGGGGGAC-GCTGGTAGTCCGGAGGCCATCATCGCCCGCCG-CGCCTT 896 consensus_13083#1 GCCGG-CGGCGTTGGGGGAC-GCTGGTAGTCCGGAGGCCATCATCGCCCGCCG-CGCCTT 738 consensus_13083#3 CCTGGACGACCTTGCAC--C-GTTTCTTGAACGGCAGCGACGACCGGTCGACGTCGGCTC 756 consensus_13083#2 AGTGGCCTTGGTGATGATCCTGGTGGTGATGGTGGTGCTCCCCCTCCATGAGAGGGAGAG 754 ** * * * * * * * ** * * consensus_13083#0 CCTCTGCCTGATGCCGCACGCGTTGCAAAGCGACTTGGGGCCGCACGGGCC--ACTCCTC 954 consensus_13083#1 CCTCTGCCTGATGCCGCACGCGTTGCAAAGCGACTTGGGGCCGCACGGGCC--ACTCCTC 796 consensus_13083#3 TCTTCTCCTTCTTCACCTTCGGCTGCGCAGCCGCC----ACCGCA-GCGGC--GCCGCTA 809 consensus_13083#2 CAGCTGAGAGCTGACTCATGTAGATGGTAGACATGAGAGGCAGCAACTGCCTAGCTACTA 814 * * ** * *** * * * ** consensus_13083#0 CACAAGGGAGTCTTGGTGGTGTTGCAGTCGGAGCACACCCTAATCACGCCAAAAGCTTGG 1014 consensus_13083#1 CACAAGGGAGTCTTGGTGGTGTTGCAGTCGGAGCACACCCTAATCACGCCAAAAGCTTGG 856 consensus_13083#3 TGTGCGGCCGCCTTGGGGCCGGC------------------------------------- 832 consensus_13083#2 ACTAGATCTCTCTAGCTAGTTTGCGAGTACAGATATTGGATAAACTCGCAGAGATCGATC 874 ** * consensus_13083#0 CCCATGGCGCCGCCATGGCCGTGATCCTCGTACGCCTGCGCCGGCCTCCTCCTCGGCTTC 1074 consensus_13083#1 CCCATGGCGCCGCCATGGCCGTGATCCTCGTACGCCTGCGCCGGCCTCCTCCTCGGCTTC 916 consensus_13083#3 ------------------------------------------------------------ consensus_13083#2 AGGATGAGACCGCGAGGAAGATGA-----GAGAGACGATGGTACGCTTCGCGCGACGAGT 929 consensus_13083#0 TTCGGCGCCACCGTCGTCGCAGCCCCGCCAGTGACACCGGACGACGGCTCACCCATCTTC 1134 consensus_13083#1 TTCGGCGCCACCGTCGTCGCAGCCCCGCCAGTGACACCGGACGACGGCTCACCCATCTTC 976 consensus_13083#3 ------------------------------------------------------------ consensus_13083#2 GTTGATGCGGTTGGAGGGGCAATTTTGCGAGGTCCA------------------------ 965 consensus_13083#0 CTCGTGATCTTCATCTTGGCCGCTGGCACCGCGCTCCACTTGCCGCCGGCGACGACCTTG 1194 consensus_13083#1 CTCGTGATCTTCATCTTGGCCGCTGGCACCGCGCTCCACTTGCCGCCGGCGACGACCTTG 1036 consensus_13083#3 ------------------------------------------------------------ consensus_13083#2 ------------------------------------------------------------ consensus_13083#0 GCTAACCCGCAGCTCGCCTGCAGCTTCTCGGTATCGTATGGATCGAACTGCGACCGCTCG 1254 consensus_13083#1 GCTAACCCGCAGCTCGCCTGCAGCTTCTCGGTATCGTATGGATCGAACTGCGACCGCTCG 1096 consensus_13083#3 ------------------------------------------------------------ consensus_13083#2 ------------------------------------------------------------ consensus_13083#0 ATCATGTCGTCGCGGATGCTCTTGACGGTCGGGAACGGCGTCGCAAAGATGCCAGCGGAT 1314 consensus_13083#1 ATCATGTCGTCGCGGATGCTCTTGACGGTCGGGAACGGCGTCGCAAAGATGCCAGCGGAT 1156 consensus_13083#3 ------------------------------------------------------------ consensus_13083#2 ------------------------------------------------------------ consensus_13083#0 GATCCTCCAATCATATTTTGGGGCTCAAGCATGGCTTGATGCTG 1358 consensus_13083#1 GATCCTCCAATCATATTTTGGGGCTCAAGCATGCCTTGATGCTG 1200 consensus_13083#3 -------------------------------------------- consensus_13083#2 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||