These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 680 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA-GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACCGCCATT-TGGTC-TGTTCGTC-GTCCGTGAAGGCCGACGCGGCGGAAGGGGGCGGCGGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGGACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAAGGCCCGGGGGGCGCGCGAGA] [-] EMBL CA756546 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTG ] [-] EMBL CA761408 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTG ] [+] EMBL CA759803 [ TTTTTTTTTTTTTTTTTTTTTTGAAAAGAAGGAACGATTTCCATTACTACGGATGAGGGGCAAACAATGTTCAAAGACCACAAATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGGAGGTACAGCACTGTTTTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCCCTAGAGAGTAAAGGAACTGATTTACAGAACCATCAAACTTCATTCAGGGGAAGGGGACAGCAATGCCCATGCTTTAAAATTCGGGAAGGGGGGCGACTTGGCGCAAATCCATCATTTGGGCGGAAAAGTAGGGTGAATGAAAGGCTCCCTTTGCATCAAGGCCATTTTGGGGCTGATGAAACCTTCGGCTTTTGCCCAACAGTTGGTGAGTTACCGCCATT TGGGC TGTTCGGC GTCCGGGAAGGGCCACTCGGCGGAAGGGGGCGGCGGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGGACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAAGGCCCGGGGGGCGCGCGAGA] [-] EMBL AU068359 [ TTTTTTTTGAAAAGANTGANCGNTTNCCATTACTACTGATGATGTNCAGACAATGTNCAGAGACCACAGNTTTTNCACATGTCCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTNCTAAGTNCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGNCTTGCTCTGAAGGGAAGGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGNTGCTTTAAGATTCGTGTAGCGGTGCGACTTGTC NAGATCCATCATTTtgt ] [-] EMBL AU058357 [ TTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGANGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAA ] [-] EMBL BM038440 [ TTTTGAAAAGAATGAACGATTTCCATTACTACGGATGATGTGCAGACAAGGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAG TGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTGGGTGCTGATGAAACC TTGGC TTTGTCCAACAGTTGATGAGTTACCGCCATT GGGTC TGTTCGTCTGTCCGTGAAGGCC ] [-] EMBL BM038030 [ TTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTANAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGGATCAATGGCATTTTGGTGCTGATGAAA CTTTGG GTTTGTCCAA AGTTGATGAGTTA CGCCATTATGGTCTTGTTCGTC GTC ] [-] EMBL BG101698 [ AATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACT ] [+] EMBL CB677589 [ GAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATT TGGTC TGTTCGTC GTCCGTGAAGGC ] [+] EMBL CF276466 [ ttttTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGATAGTAGAGGAACTGATATACATAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATT TGGTC TGTTCGTC GTCCGTGAAGGCCGACGCGGTGGA ] [+] EMBL BF475201 [ TTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAA ATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAGTGAAAGTCTCCCTTTGCATCCATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACCGCCATT TGGTC TGTTCGTC GTCCGTGAAGGCCGAC CGG ] consensusID : consensus_13085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC] [-] EMBL CF336656 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13085#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTT 60 consensus_13085#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------TTT 45 ****************************************** *** consensus_13085#0 CCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAG 120 consensus_13085#1 TTTTTTTTTTTTTTTTTTT----------TTT------------TTTTTCACATGTTCAG 83 ** * * * * * ** **************** consensus_13085#0 GGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAG 180 consensus_13085#1 GGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAG 143 ************************************************************ consensus_13085#0 TTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATA 240 consensus_13085#1 TTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATA 203 ************************************************************ consensus_13085#0 TTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGA 300 consensus_13085#1 TTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGA 263 ************************************************************ consensus_13085#0 AACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAG 360 consensus_13085#1 AACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAG 323 ************************************************************ consensus_13085#0 CGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCC 420 consensus_13085#1 CGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCC 383 ************************************************************ consensus_13085#0 CTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATG 480 consensus_13085#1 CTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATG 443 ************************************************************ consensus_13085#0 AGTTACCGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCCGACGCGGCGGAAGGGGGCGGC 540 consensus_13085#1 AGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC--------------------- 482 ****** ******************************** consensus_13085#0 GGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGG 600 consensus_13085#1 ------------------------------------------------------------ consensus_13085#0 ACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAA 660 consensus_13085#1 ------------------------------------------------------------ consensus_13085#0 GGCCCGGGGGGCGCGCGAGA 680 consensus_13085#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||