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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 680 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA-GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACCGCCATT-TGGTC-TGTTCGTC-GTCCGTGAAGGCCGACGCGGCGGAAGGGGGCGGCGGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGGACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAAGGCCCGGGGGGCGCGCGAGA]
[-] EMBL CA756546 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTG ]
[-] EMBL CA761408 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTG ]
[+] EMBL CA759803 [ TTTTTTTTTTTTTTTTTTTTTTGAAAAGAAGGAACGATTTCCATTACTACGGATGAGGGGCAAACAATGTTCAAAGACCACAAATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGGAGGTACAGCACTGTTTTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCCCTAGAGAGTAAAGGAACTGATTTACAGAACCATCAAACTTCATTCAGGGGAAGGGGACAGCAATGCCCATGCTTTAAAATTCGGGAAGGGGGGCGACTTGGCGCAAATCCATCATTTGGGCGGAAAAGTAGGGTGAATGAAAGGCTCCCTTTGCATCAAGGCCATTTTGGGGCTGATGAAACCTTCGGCTTTTGCCCAACAGTTGGTGAGTTACCGCCATT TGGGC TGTTCGGC GTCCGGGAAGGGCCACTCGGCGGAAGGGGGCGGCGGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGGACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAAGGCCCGGGGGGCGCGCGAGA]
[-] EMBL AU068359 [ TTTTTTTTGAAAAGANTGANCGNTTNCCATTACTACTGATGATGTNCAGACAATGTNCAGAGACCACAGNTTTTNCACATGTCCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTNCTAAGTNCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGNCTTGCTCTGAAGGGAAGGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGNTGCTTTAAGATTCGTGTAGCGGTGCGACTTGTC NAGATCCATCATTTtgt ]
[-] EMBL AU058357 [ TTTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGANGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAA ]
[-] EMBL BM038440 [ TTTTGAAAAGAATGAACGATTTCCATTACTACGGATGATGTGCAGACAAGGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAG TGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTGGGTGCTGATGAAACC TTGGC TTTGTCCAACAGTTGATGAGTTACCGCCATT GGGTC TGTTCGTCTGTCCGTGAAGGCC ]
[-] EMBL BM038030 [ TTTTGAAAAGAATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTANAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGGATCAATGGCATTTTGGTGCTGATGAAA CTTTGG GTTTGTCCAA AGTTGATGAGTTA CGCCATTATGGTCTTGTTCGTC GTC ]
[-] EMBL BG101698 [ AATGAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACT ]
[+] EMBL CB677589 [ GAACGATTTCCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATT TGGTC TGTTCGTC GTCCGTGAAGGC ]
[+] EMBL CF276466 [ ttttTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGATAGTAGAGGAACTGATATACATAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATT TGGTC TGTTCGTC GTCCGTGAAGGCCGACGCGGTGGA ]
[+] EMBL BF475201 [ TTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAA GGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAA ATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAGTGAAAGTCTCCCTTTGCATCCATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACCGCCATT TGGTC TGTTCGTC GTCCGTGAAGGCCGAC CGG ]
consensusID : consensus_13085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC]
[-] EMBL CF336656 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGTTCAGGGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAGTTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATATTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGAAACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAGCGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCCCTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATGAGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13085#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGAATGAACGATTT 60
consensus_13085#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------TTT 45
****************************************** ***
consensus_13085#0 CCATTACTACTGATGATGTGCAGACAATGTTCAGAGACCACAGATTTTTCACATGTTCAG 120
consensus_13085#1 TTTTTTTTTTTTTTTTTTT----------TTT------------TTTTTCACATGTTCAG 83
** * * * * * ** ****************
consensus_13085#0 GGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAG 180
consensus_13085#1 GGTAGCCTTACTTTAGCTGACGAAACATTTTATTTGAGGTATGTACAGCACTGTTCTAAG 143
************************************************************
consensus_13085#0 TTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATA 240
consensus_13085#1 TTCCTTGGGCGACAAAGCTAGGCAGTTGATGATATGATACAGGTAACTACATACACTATA 203
************************************************************
consensus_13085#0 TTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGA 300
consensus_13085#1 TTGGACTTGCTCTGAAGGGAAGGGGGGAGGCACTAGAGAGTAGAGGAACTGATATACAGA 263
************************************************************
consensus_13085#0 AACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAG 360
consensus_13085#1 AACATCAAACATCATTCAGGGGAAGTGGACAGCAATGCCGATGCTTTAAGATTCGTGTAG 323
************************************************************
consensus_13085#0 CGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCC 420
consensus_13085#1 CGGTGCGACTTGTCGCAGATCCATCATTTGTGCGGGAGAGTAGGTTGAATGAAAGTCTCC 383
************************************************************
consensus_13085#0 CTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATG 480
consensus_13085#1 CTTTGCATCAATGCCATTTTGGTGCTGATGAAACCTTTGGCTTTTGTCCAACAGTTGATG 443
************************************************************
consensus_13085#0 AGTTACCGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCCGACGCGGCGGAAGGGGGCGGC 540
consensus_13085#1 AGTTACTGCCATTTGGTCTGTTCGTCGTCCGTGAAGGCC--------------------- 482
****** ********************************
consensus_13085#0 GGAGGCCGCCGCTCGGCCGCACGAGGGCGGCGCGTGGGCGATGAACCCGACTACGTCGGG 600
consensus_13085#1 ------------------------------------------------------------
consensus_13085#0 ACGCAGCCGCGGGCGGGGGGGGGGCGACGTGTAAGGGCCCGAGGGCACCGTCGGGGGGAA 660
consensus_13085#1 ------------------------------------------------------------
consensus_13085#0 GGCCCGGGGGGCGCGCGAGA 680
consensus_13085#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||