These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 889 fasta sequence [GTTCGTGACGCGTCACGCCCCGCGGCCTTCCCCTCCCAAAAAGCGGCAGGACGCAACCTGATCCCCATCCCCCGAGCAAGCAAAGCGGAGGAACGCGATGGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT-CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC-AGGCACACGTCCCTAGTTATAAAAATAACA-TT-GACAAG-TTGAAAGCA-AAAG-GGGTTGACTC-TGTTAT-C-TGTGTCTCT-GTGAATGACCCTTATG-CCCTGAATGGATGGG-C-AGAAAAGCTA-CAGGC-AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT-CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC-TTTCAATGTTGAGGTAGCTCCTT-CTGACTTCAAGGTTTCTGGTGCCGAGGT-GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGTCAACATGTTTGTCAGCATTGACGTGAG] [+] EMBL AK069749 [GTTCGTGACGCGTCACGCCCCGCGGCCTTCCCCTCCCAAAAAGCGGCAGGACGCAACCTGATCCCCATCCCCCGAGCAAGCAAAGCGGAGGAACGCGATGGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACA TT GACAAG TTGAAAACA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGCAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGTCAACAT ] [+] EMBL AK058396 [ GCAAGCAAAGCGGAGGAACGCGATGGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACA TT GACAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGGCAACATGTTTGTCAGCATTGACGTGAG] [+] EMBL CB679881 [ AGGAACCCTATGGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACA TT GACAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAAT ] [+] EMBL OSS15424A [ GGCGTCGGCGCTGCTGAGGAAGGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGCGTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCG CACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGNCCTGCCTGGTGCATACACAGGAGTCTGTTCACAAGGCACACGTCCNTAGTTATAAAAATAACA TTNGACAAGTTTGAAAGCA AAAG GGGTTTACTCTTGTTAT CTTGTGTCTCTGGTGAATNACCCTTATG ] [+] EMBL OSC1421 [ GTCGGCNCTGCTGAGGAAGGCGACGGTAGGCGGCTCCNCGGCGGCGGCNGCGGCGAGGTGGGCTTCCAGGGGGCTCGCNTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCNCGGCGTGTCGCTGCAGAAGGCCCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTTCCATGGGAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACATTT GACAAG TTNAAAGCA AAAGNGGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATGNCCCTGAATGGATGGG CAAGAAAAGCTACCAGGCNAAAAAATGCTt ] [+] EMBL AU082086 [ ACCCCTNTCAAGGACATCTTCCATGGNAAGAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATANCA TT GACAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGAT GG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAAaaaaa ] [+] EMBL BI807758 [ CATGGGAAGAAA TGTTCATGCTTC GCCTGCCTGGTGCATACACAGGA TCTGTTCAC AGGCACACGTCCCTAGTGATAAAAATAACC TT GACAAG TTGAAAGCATAAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGGCC AGAAAAGCTA CAGGC AAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACCAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTT GCC CCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGCGTGTC ATGTTGAGGTAGCTCCTTGCTGACTTCAAGGTTTCTGGTGCCGAGGTGGATCTT GACC AATCTGATCCGAGTAACGAAATTCTGTCCTTGTTTGTTTTCTCAT CAGCATGCATGCTTTT CTGTAGTAAAT AACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAaaaa ] [-] EMBL CB679882 [ GAAAGTGGTCAT CTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCAC AGGCACACGTCCCTAGTTATAAAAATAACA TT GCCAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GAGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTTTGGTGCCGAGGT GATTTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGGGTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTAATGCGCCCAGAATATTTGTTTT ] [+] EMBL CB000221 [ TGTTCAC AGGCACACGTCCCTAGTTATAAAAA CCTT TT GACAAG TTGAAAGCA AAAG GGGTTGACTC TGTTAT C TGTGTCTCT GTGAATGACCCTTATG CCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTT CCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTAAAAAaaa ] [+] EMBL AU070430 [ GGTTGACTC TGTTATCC TGTGTCTCT GTGAATGACCCTTATGCCCCTGAATGGATGGG C AGAAAAGCTA CAGGC AAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGC TTTCAATGTTGAGGTAGCTCCTT CTGACTTCAAGGTTTCTGGTGCCGAGGT GATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTG TACGCCCAGAATATTTGTTTTCCTGTTACAAAaa ] consensusID : consensus_13086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CAGGCAAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGCTTTCAATGTTGAGGTAGCTCCTTCTGACTTCAAGGTTTCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU082094 [CAGGCAAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCACAAAAGCTTGGATTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTTTGTTGACGATGGGAAGATCAAGGCTTTCAATGTTGAGGTAGCTCCTTCTGACTTCAAGGTTTCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGAAATTCTGTCGTTGTTTGTTTTCTCATGCAGCATGCATGCTTTTGCTGTAGTAAATAAACGAAAACTCGACTACTCGAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCTGTTACAAATCAGCTTGCCGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [GAGGTAAACCGAAANTGTCCNTGTGTCGCTTGGTAGTTGGTGTTTCCGTCACGTGCCACGCCACNTGCATGCCCGTGTTGTGCCGTGGTAGGTAAACGTACAACCGAAAACGTCGACGTACTCCGAAGGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCCTGTTACAAATCACGCTTGCCGGGTAAAAAAAAAA] [+] EMBL BQ906417 [GAGGTAAACCGAAANTGTCCNTGTGTCGCTTGGTAGTTGGTGTTTCCGTCACGTGCCACGCCACNTGCATGCCCGTGTTGTGCCGTGGTAGGTAAACGTACAACCGAAAACGTCGACGTACTCCGAAGGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCCAGAATATTTGTTTTCCCTGTTACAAATCACGCTTGCCGGGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13086#0 GTTCGTGACGCGTCACGCCCCGCGGCCTTCCCCTCCCAAAAAGCGGCAGGACGCAACCTG 60 consensus_13086#1 ------------------------------------------------------------ consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 ATCCCCATCCCCCGAGCAAGCAAAGCGGAGGAACGCGATGGCGTCGGCGCTGCTGAGGAA 120 consensus_13086#1 ------------------------------------------------------------ consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 GGCGACGGTAGGCGGCTCCGCGGCGGCGGCGGCGGCGAGGTGGGCTTCCAGGGGGCTCGC 180 consensus_13086#1 ------------------------------------------------------------ consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 GTCGGTGGGCTCCGGCTCCGACATCGTCTCGGCGGCGCCCGGCGTGTCGCTGCAGAAGGC 240 consensus_13086#1 ------------------------------------------------------------ consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 CCGCTCCTGGGACGAGGGCGTCGCCACCAACTTCTCCACCACCCCTCTCAAGGACATCTT 300 consensus_13086#1 ------------------------------------------------------------ consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 CCATGGGAAGAAAGTGGTCATCTTCGGCCTGCCTGGTGCATACACAGGAGTCTGTTCACA 360 consensus_13086#1 ------------------------------------------------------------ consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 GGCACACGTCCCTAGTTATAAAAATAACATTGACAAGTTGAAAGCAAAAGGGGTTGACTC 420 consensus_13086#1 ------------------------------------------------------------ consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 TGTTATCTGTGTCTCTGTGAATGACCCTTATGCCCTGAATGGATGGGCAGAAAAGCTACA 480 consensus_13086#1 ----------------------------------------------------------CA 2 consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 GGCAAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCACAAAAGCTTGGA 540 consensus_13086#1 GGCAAAAGATGCTATTGAATTTTATGGTGATTTTGATGGGAGTTTCCACAAAAGCTTGGA 62 consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 TTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTT 600 consensus_13086#1 TTTGGAAGTAGACCTCTCTGCTGCTTTGCTTGGCCGCCGTTCCCACAGGTGGTCAGCCTT 122 consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 TGTTGACGATGGGAAGATCAAGGCTTTCAATGTTGAGGTAGCTCCTTCTGACTTCAAGGT 660 consensus_13086#1 TGTTGACGATGGGAAGATCAAGGCTTTCAATGTTGAGGTAGCTCCTTCTGACTTCAAGGT 182 consensus_13086#2 ------------------------------------------------------------ consensus_13086#0 TTCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGA--AATTCTGTCGTT 718 consensus_13086#1 TTCTGGTGCCGAGGTGATCTTGGACCAAATCTGATCCGAGTAACGA--AATTCTGTCGTT 240 consensus_13086#2 ----------GAGGTAAACCGAAANTGTCCNTGTGTCGCTTGGTAGTTGGTGTTTCCGTC 50 ***** * * * ** ** * * * *** consensus_13086#0 GTTTGTTTTCTCATGCAGCATGCATGCTTT-TGCTGTAGTAAATAAACG--------AAA 769 consensus_13086#1 GTTTGTTTTCTCATGCAGCATGCATGCTTT-TGCTGTAGTAAATAAACG--------AAA 291 consensus_13086#2 ACGTGCCACGCCACNT-GCATGCCCGTGTTGTGCCGTGGTAGGTAAACGTACAACCGAAA 109 ** ** ****** * ** *** ** *** ****** *** consensus_13086#0 AC-TCGAC-TACTC---GAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCC 824 consensus_13086#1 AC-TCGAC-TACTC---GAGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCC 346 consensus_13086#2 ACGTCGACGTACTCCGAAGGTATCCATGTAAAGATGTTTGTAGTCTGCCTTGCTACGCCC 169 ** ***** ***** ***************************************** consensus_13086#0 AGAATATTTGTTTTCC-TGTTACAAATCA-GCTTGCCGGTCAACATGTTTGTCAGCATTG 882 consensus_13086#1 AGAATATTTGTTTTCC-TGTTACAAATCA-GCTTGCCGGGCAAAAAAAAAAAAAAAAAAA 404 consensus_13086#2 AGAATATTTGTTTTCCCTGTTACAAATCACGCTTGCCGGGTAAAAAAAAAA--------- 220 **************** ************ ********* ** * consensus_13086#0 ACGTGAG----------- 889 consensus_13086#1 AAAAAAAAAAAAAAAAAA 422 consensus_13086#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||