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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 703 fasta sequence
[CCGNGACGCTTGGGTAACTCCCTNTCCCTCAACAATTTCTNTTCTCCTCTCCACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGG-CGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCT-GCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATNGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGGCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGCAGGGGGGTGTCCCCCTCCTCTTCTTCCTCCCGTCTGTATCCACGCTGCCACGCGGGGGGACGGTGCAGCCTCTCGGGGCGCCCCCGGGCGAGAGGGCCGGGCTCGCACCGAGCCTCGCGTCGGCAACGCCCGCACTGAGGCGCGCCGCGTCAGCGGCGGCGCGTCCCGCGCCGGTCGCGCCCCGACCCGCGCGCGTCGCGCGCTTCGCGGCGGGCCG]
[+] EMBL C28538 [CCGNGACGCTTGGGTAACTCCCTNTCCCTCAACAATTCTTNATGTCCTCTCCACCCCTCCCCTATGGATCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGG NGNTCCCCCTCTTTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTNACAGCAGCNATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCT GCATGGATGGGCCGACGACGGCGGTGGTGGCG ]
[+] EMBL C28899 [ TTCTCTTCTCCTCTCCACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGGNCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATNGGGGACGCGGCGGC GCGTGGACGGCGACGTCTNGCATGGATGGGCCGACGAC GNGGTNGTNGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATNGCGACGACGGCATGGAT ]
[+] EMBL AU069056 [ TTCTTTTCTCCTCTCCACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTNCGG NGCTCCCCCTCTNTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACANCAGCNATGCAGACATNGGGGACGCGGCGGCGGCGTNGACGGCGACGTCT TCATGGATGGGCCGACGACGGCGGT ]
[+] EMBL AU085738 [ CTCNNCACCCCTCCCCACCGGCTCACCNCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGN CGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGC GCGT ]
[+] EMBL CA756085 [ TCCGATCGGAGGAGGGGAGCAACGGCAGTGCGG CGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCT GCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGGCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGCAGGGGGGTGTCCCCCTCCTCTTCTTCCTCCCGTCTGTATCCACGCTGCCACGCGGGGGGACGGTGCAGCCTCTCGGGGCGCCCCCGGGCGAGAGGGCCGGGCTCGCACCGAGCCTCGCGTCGGCAACGCCCGCACTGAGGCGCGCCGCGTCAGCGGCGGCGCGTCCCGCGCCGGTCGCGCCCCGACCCGCGCGCGTCGCGCGCTTCGCGGCGGGCCG]
consensusID : consensus_13087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 637 fasta sequence
[ACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCTGTTTCTTGGATGAGGTTTGTGAGAATTTGTGATTTGTGATTTGAAACCTTAAA]
[+] EMBL AK120383 [ACCCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGT ]
[+] EMBL CF332568 [ CCCTCCCCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGTGCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGATGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGG ]
[+] EMBL CB665680 [ ACGGCCACTTCTGCATGGATGGGCCGACGACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGGGGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGG ]
[-] EMBL CB665681 [ GCTCCTCCCTCCGGCTTGTGGAGGGGGAGATACGTCGCCGTGGATGGCGACGACGGCATGGATGGGGCGACATAGGTTGCCCGGTCGGCGACGGCGGTGCGGAAGCGGTTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCCCCGCATGCAAAGGAGTTTGCCGGCGACGACGATGATGTTGTTTCTTTTTTTTTTCTAAGTTTCCATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCTGTTTCTTG ]
[-] EMBL CB644582 [ CCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCTGTTTCTTGGATGAGGTTTGTGAGAATTTGTGATTTGTGATTTGAAACCTTAAA]
consensusID : consensus_13087#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 390 fasta sequence
[GGGACCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACG-ATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU085739 [GGGACCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGGACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACG ATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF332569 [ ATCCGGCCCCTACGAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGAGGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGAATGATGTTGTTTCTTTTTTTTTTCTAAGTTTACATGTTGATTGCCGTGGATTTGAATCCAATGTTTTGTGTTGATGAATGGATGTTTGTGATTGGATTCAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13087#1 ----------------------------------------------------ACCCCTCC 8
consensus_13087#2 ------------------------------------------------------------
consensus_13087#0 CCGNGACGCTTGGGTAACTCCCTNTCCCTCAACAATTTCTNTTCTCCTCTCCACCCCTCC 60
consensus_13087#1 CCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGT 68
consensus_13087#2 ------------------------------------------------------------
consensus_13087#0 CCACCGGCTCACCTCCTCTCCTCCCTCCCAATCCGATCGGAGGAGGGGAGCAACGGCAGT 120
consensus_13087#1 GCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGA 128
consensus_13087#2 ------------------------------------------------------------
consensus_13087#0 GCGGCGCTCCCCCTCTCTCCCTCCCCACTGGAGGAGGGGGAGCGACGGTGACAGCAGCGA 180
consensus_13087#1 TGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACG 188
consensus_13087#2 ------------------------------------------------------------
consensus_13087#0 TGCAGACATGGGGGACGCGGCGGCGGCGTGGACGGCGACGTCTGCATGGATGGGCCGACG 240
consensus_13087#1 ACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGG 248
consensus_13087#2 ------------------------------------------------------------
consensus_13087#0 ACGGCGGTGGTGGCGGCTCCCCCTCTCTCCCTCCCCGCTCCTAGATCTGGCTGGAGGAGG 300
consensus_13087#1 GGGAGCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGG 308
consensus_13087#2 GGGACCGACGACGACGTGGATGGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGG 60
consensus_13087#0 GGGAGCGACGACGACGTGGATNGCGACGACGGCATGGATGGGGCGACAGCGGTTGCCCGG 360
**** **************** **************************************
consensus_13087#1 ACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTAC 368
consensus_13087#2 ACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGCCCCTAC 120
consensus_13087#0 ACGGCGACGGCGGTGCGGACGCGGCTCCCCTCCCCTCCCTCTCCTAGATCCGGGCCCTAC 420
***************************************************** ******
consensus_13087#1 GAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGA 428
consensus_13087#2 GAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGA 180
consensus_13087#0 GAGGAGAGGGGAGGGCGGTGGCGGTGGCGGAAACCTCCCTCCCTCCTAGATCCGGCCTGA 480
************************************************************
consensus_13087#1 GGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGA 488
consensus_13087#2 GGAGGGAGGGGGGTGGCGGCGGCCACCGCATGCAAAGGAGTTTGCCGGCGACGACGATGA 240
consensus_13087#0 GGAGGCAGGGGGGTGTCCCCCTCCTCTTCTTCCTCCCGTCTGTATCCACGCTGCCACGCG 540
***** ********* * * ** * * * * * * * * ** * *
consensus_13087#1 TGTTGTTTCTTTTTTTTTTCTAAGTTTACATGT-TGATTGCCGTGGATTTGAATCCAATG 547
consensus_13087#2 TGTTGTTTCTTTTTTTTTTCTAAGTTTACATGT-TGATTGCCGTGGATTTGAATCCAATG 299
consensus_13087#0 GGGGGACGGTGCAGCCTCTCGGGGCGCCCCCGGGCGAGAGGGCCGGGCTCGCACCGA--G 598
* * * * ** * * * ** * ** * * * * * *
consensus_13087#1 TTTTGTGTTGATGAATGGATGT-TTGTGATTGGATTCTGTTTCTTGGATGAGGTTTGTGA 606
consensus_13087#2 TTTTGTGTTGATGAATGGATGT-TTGTGATTGGATTCAAAAAAAAAAAAAAAAAAAAAAA 358
consensus_13087#0 CCTCGCGTCGGC-AACGCCCGCACTGAGGCGCGCCGCGTCAGCGGCGGCGCGTCCCGCGC 657
* * ** * ** * * ** * * *
consensus_13087#1 GAATTTGTGATTTGTGATTTGAAACCTTAAA--------------- 637
consensus_13087#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 390
consensus_13087#0 CGGTCGCGCCCCGACCCGCGCGCGTCGCGCGCTTCGCGGCGGGCCG 703
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||