These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1135 fasta sequence [GAGAGAAAGGAGGAGAAAAGTAGTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG-AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCAC-TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGTCCTGATATCTATATTCTACTGCTTGCAAGGCAGAGGAGCTGTTGACATCCCCTGCATGATCAAAAA] [+] EMBL CF293670 [GAGAGAAAGGAGGAGAAAAGTAGTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCAC TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTG ] [+] EMBL AK102752 [ GAAAGGAGGAGAAAAGTAGTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCAC TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGT ] [+] EMBL AU031053 [ GTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCANTTGCTTATCCATTATATGCCTCTGTGAGAGNAATAGAAAACAAAATCTCCTGTTGATG TCAGCAATGGCTCACTTACTGGGn ] [+] EMBL OSC109781 [ ccGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTTGTTTGAGCTTACTTTTGCTCCAGTAATTG ] [+] EMBL C28395 [ GTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATNAC TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGNCTTACCTTGCTTCCATGGNGCTGCTTATGNTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGNCAA ] [+] EMBL AK061806 [ CTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCAC TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGTCCTGATATCTATATTCTACTGCTTGCAAGGCAGAGGAGCTGTTGA ] [+] EMBL AU102145 [ TGCTTATGTTTATGATCACTTTGTGCGNCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAACCCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGTCCTGATATCTATATTCTACTGCTTGCAAGGCAGAGGAGCTGTTGACATCCCCTGCATGATCAAAAA] [-] EMBL CF293669 [ TCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTTTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATTTTGGAGGAGGTAGAATTTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATTTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTTTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAA AAAAAa ] [+] EMBL AU031054 [ CACATGGCCAGGGCTGAAAGAGAATCATGGGGCGANAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCNCGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTNGTGACAACCTCTGGACTTGGTTGGCNGTTAaaaaaaa ] [-] EMBL CF310812 [ TTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAAa ] consensusID : consensus_13088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence [GAAGGAGTAGAAAAGTCTCCCGAGCACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAGAAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAA] [+] EMBL CF310811 [GAAGGAGTAGAAAAGTCTCCCGAGCACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAGAAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAA] [+] EMBL BE230397 [ TGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTAAGTAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13088#0 GAGAGAAAGGAGGAGAAAAGTAGTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACG 60 consensus_13088#1 -------------------------------GAAGGAGTAGAAAAGTCTCCCGAGCA-CG 28 **** * ************* ** consensus_13088#0 GCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATC 120 consensus_13088#1 GCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATC 88 ************************************************************ consensus_13088#0 CATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCT 180 consensus_13088#1 CATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCT 148 ************************************************************ consensus_13088#0 TTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCT 240 consensus_13088#1 TTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCT 208 ************************************************************ consensus_13088#0 TATCCATTATATGCCTCTGTGAGAGCAATAGAAACAAAATCTCCTGTTGATGATCAGCAA 300 consensus_13088#1 TATCCATTATATGCCTCTGTGAGAGCAATAGAAACAAAATCTCCTGTTGATGATCAGCAA 268 ************************************************************ consensus_13088#0 TGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCA 360 consensus_13088#1 TGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCA 328 ************************************************************ consensus_13088#0 GTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTC 420 consensus_13088#1 GTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTC 388 ************************************************************ consensus_13088#0 TTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTG 480 consensus_13088#1 TTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTG 448 ************************************************************ consensus_13088#0 AATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGAT 540 consensus_13088#1 AATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGAT 508 ************************************************************ consensus_13088#0 GATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAA 600 consensus_13088#1 GATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAA 568 ************************************************************ consensus_13088#0 CTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTG 660 consensus_13088#1 CTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAA--------- 619 *************************************************** consensus_13088#0 GAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCA 720 consensus_13088#1 ------------------------------------------------------------ consensus_13088#0 TTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCA 780 consensus_13088#1 ------------------------------------------------------------ consensus_13088#0 GGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGT 840 consensus_13088#1 ------------------------------------------------------------ consensus_13088#0 ACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGT 900 consensus_13088#1 ------------------------------------------------------------ consensus_13088#0 GCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAAT 960 consensus_13088#1 ------------------------------------------------------------ consensus_13088#0 GATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTG 1020 consensus_13088#1 ------------------------------------------------------------ consensus_13088#0 GCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGTCCTGATATCTA 1080 consensus_13088#1 ------------------------------------------------------------ consensus_13088#0 TATTCTACTGCTTGCAAGGCAGAGGAGCTGTTGACATCCCCTGCATGATCAAAAA 1135 consensus_13088#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||