cluster # 13099

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Oryza sativa
cluster # 13099 cluster # 13099 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13099#0 length = 1948 sequences # 9

consensus_13099#1 length = 838 sequences # 2
consensus_13099#2 length = 647 sequences # 1

consensusID : consensus_13099#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1948
fasta sequence

                              [CAGCGCCGCCGTCGCGTCGCGCCGATCTCCACATCACCGGCGGCGACTTGCGAGCACCGTGCCGGGCGCCTACTGCTTCCGGCGCGTACTCGACTCCTTGCGCCAAAGTCAATCTCCCCTCGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGTTCGCCCCGCCCCGCCGCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACGGACGGGAGCATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGGAAGATGATGAGAAACAACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGGGCGAACGAGACTGTTTGCATGCACGGGTACAATTATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTCCGCTAGTTTGGTTAGATGCACTAAAGATGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCAATGGCAAGCTTACCGAAGGAAAACTGTGGAACTATGATTTATATTATAATATTGCTGTTGTCAAAATCAAGTATTTCCCAGAACTTAGTACAGCACAGATACATAATCAAGGGCAATCTAATGTTAAATTATCTCAAAGTAAACTGGTCGCTGTTGGACGTGGCTATGAATCTGGAGAACTAATGGCTACAGGTGGGACACTGCTGTACAAACCTAGCAAACTTGACTGCAAGGAACTCATGACCTCCACTTGTAAGATCACAAAGGCTGGGATTGGTGGTCCCCTTGTTGGGTTTGATGGAAACTTTGTTGGCATGAACTTTTGTGATAAGAAGGAAACTCCTTTCTTACCAATCAATATAATTCGGAAATGTTTAAAGCACTTTGATATGTTTGGGAGAGTTGTTCAGCCATGGCTTGGCCTGAGGATTGGATCACTGAAACATG-AAAAACTGGATATCCGTGAACAAATACATGGAAGCTTCTCCAACACAGGTGGCATTTATGTAAAAGAGGTTTTTGATGGATCCCCAGCAGCAGATTCTGGAATCAACGTTGGTGATGTTATTACCAAGCTTGATGGAGTCGATCTATTCCATGCACAAGAGTTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCTTTTCAAGGTGTCTATTCTAAGGCCAAGTAACGG-TTAACCTTCCGTGCAATTGTCAATGCTGAAGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCTAAGGCGGAGTGGCTATATCCATGTACGGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGCATTAATCGAGAAGAAATCTTGCATTAATCGAGAAGATATGCTGAGATACTTAATGGAACATGCACCGCAAGTTTTTGTTGACATTCATATTTGGCAACTGAATAGGGCTACAGGAGTGAAAAAAAATTGCATGTCTACTAATATTAGCAAATTGCATCCTTTGCCAGCTGAGTAATATGAATTGTGTTAATGCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTTTTTAACAAGTTTATGAAAGCTTGGGTAGTATA-GCATGATGT]

[+] EMBL AK102877             [CAGCGCCGCCGTCGCGTCGCGCCGATCTCCACATCACCGGCGGCGACTTGCGAGCACCGTGCCGGGCGCCTACTGCTTCCGGCGCGTACTCGACTCCTTGCGCCAAAGTCAATCTCCCCTCGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGTTCGCCCCGCCCCGCCGCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACGGACGGGAGCATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGGAAGATGATGAGAAACAACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGGGCGAACGAGACTGTTTGCATGCACGGGTACAATTATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTCCGCTAGTTTGGTTAGATGCACTAAAGATGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCAATGGCAAGCTTACCGAAGGAAAACTGTGGAACTATGATTTATATTATAATATTGCTGTTGTCAAAATCAAGTATTTCCCAGAACTTAGTACAGCACAGATACATAATCAAGGGCAATCTAATGTTAAATTATCTCAAAGTAAACTGGTCGCTGTTGGACGTGGCTATGAATCTGGAGAACTAATGGCTACAGGTGGGACACTGCTGTACAAACCTAGCAAACTTGACTGCAAGGAACTCATGACCTCCACTTGTAAGATCACAAAGGCTGGGATTGGTGGTCCCCTTGTTGGGTTTGATGGAAACTTTGTTGGCATGAACTTTTGTGATAAGAAGGAAACTCCTTTCTTACCAATCAATATAATTCGGAAATGTTTAAAGCACTTTGATATGTTTGGGAGAGTTGTTCAGCCATGGCTTGGCCTGAGGATTGGATCACTGAAACATG AAAAACTGGATATCCGTGAACAAATACATGGAAGCTTCTCCAACACAGGTGGCATTTATGTAAAAGAGGTTTTTGATGGATCCCCAGCAGCAGATTCTGGAATCAACGTTGGTGATGTTATTACCAAGCTTGATGGAGTCGATCTATTCCATGCACAAGAGTTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCTTTTCAAGGTGTCTATTCTAAGGCCAAGTAACGG TTAACCTTCCGTGCAATTGTCAATGCTGAAGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCTAAGGCGGAGTGGCTATATCCATGTACGGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGCATTAATCGAGAAGAAATCTTGCATTAATCGAGAAGATATGCTGAGATACTTAATGGAACATGCACCGCAAGTTTTTGTTGACATTCATATTTGGCAACTGAATAGGGCTACAGGAGTGAAAAAAAATTGCATGTCTACTAATATTAGCAAATTGCATCCTTTGCCAGCTGAGTAATATGAATTGTGTTAATGCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTTTTTAACAAGTTTATGA                          ]
[+] EMBL CB639786             [      CGCCGTCGCGTCGCGCCGATCTCCACATCACCGGCGGCGACTTGCGAGCACCGTGCCGGGCGCCTACTGCTTCCGGCGCGTACTCGACTCCTTGCGCCAAAGTCAATCTCCCCTCGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGTTCGCCCCGCCCCGCCGCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACGGACGGGAGCATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGGAAGATGATGAGAAACAACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGGGCGAACGAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB650135             [          GTCGCCTCTCGCCGATCTCCACATCACCGGCGGCGACTTGCGAGCACCGTGCCGGGCGCCTACTGCTTCCGGCGCGTACTCGACTCCTTGCGCCAAAGTCAATCTCCCCTCGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGTTCGCCCCGCCCCGCCGCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACGGACGGGAGCATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGGAAGATGATGAGAAACAACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGGGCGAACGAGACTGTTTGCATGCACGGGTACAATTATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTCCGCTAGTTTGGTTAGATGCACTAAAGATGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCAATGGCAAGCTTACCGAAGGAAAACTGTGGAACTATGATTTATATTATAATATTGCTGTTGTCAAAATCAAGTATTTCCCAGAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB673249             [             GCGTCGCGCCGATCTCCACATCACCGGCGGCGACTTGCGAGCACCGTGCCGGGCGCCTACTGCTTCCGGCGCGTACTCGACTCCTTGCGCCAAAGTCAATCTCCCCTCGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGTTCGCCCCGCCCCGCCGCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACGGACGGGAGCATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGGAAGATGATGAGAAACAACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGGGCGAACGAGACTGTTTGCATGCACGGGTACAATTATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTCCGCTAGTTTGGTTAGATGCACTAAAGATGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCAATGGGCAGCTTACCGAAGGAAAACTGTGGAACTATGATTTATATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU174712             [                                                                                                                                                                                                                                                                                                                         AAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGGGCGAACGAGACTGTTTGCATGCACGGGTACAATTATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTCCGCTAGTTTGGTTAGATGCACTAAAGATGAAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB673250             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTGAAACATGAAAAAACTGGATATCCGTGAACAAATACATGGAAGCTTCTCCAACACAGGTGGCATTTATGTAAAAGAGGTTTTTGATGGATCCCCAGCAGCAGATTCTGGAATCAACGTTGGTGATGTTATTACCAAGCTTGATGGAGTCGATCTATTCCATGCACAAGAGTTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCTTTTCAAGGTGTCTATTCTAAGGCCAAGTAACGGTTTAACCTTCCGTGCAATTGTCAATGCTGAAGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCTAAGGCGGAGTGGCTATATCCATGTACGGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGCATTAATCGAGAAGAAATCTTGCATTAATCGAGAAGATATGCTGAGATACTTAATGGAACATGCACCGCAAGTTTTTGTTGACATTCATATTTGGCAACTGAATAGGGCTACAGGAGTGAAAAAAAATTGCATGTCTACTAATATTAGCAAATTGCATCCTTTGCCAGCTGAGTAATATGAATTGTGTTAATGCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTTTTTAACAAGTTTATGGAAGCTTGGGTAGTATA GC       ]
[-] EMBL CB650136             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGCTTGATGGAGTCGATCTATTCCATGCACAAGAGTTGTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCTTTTCAAGGTGTCTATTTTAAGGCCAAGTAACGGTTTAACCTTCCGTGCAATTGTCAATGCTGAAGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCTAAGGCGGAGTGGGTATATCCATGTACGGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACTTGTGAAGATAGATATTATTTACCCGCCCTTGATGATTTTGAATTAAGACTATCTTTCGGTGAAGAATGAGGTGGAGAAATCTTGCATTAATCGAGAAGAAATCTTGCATTAATGGAGAAGATATGCTGAGATATTTAATGGACCATGCCCCGCAAGTTTTTGTTGACATTCATATTTGGCAACTGAATAGGGCTCCAGGAGTGAAAAAAAATTGCATGTTTGGTAATATTAGCAAATTGCATCCTTTGCCAGCTGAGTAATATGAATTGTGTTAATGCGGAGTTGTTCCAGCAAGATGTTCTGTTTGGCTTTTCCGTTTTTATCAAGTTTATGAAAGCTTGGGTAGTATATGCATGATGT]
[+] EMBL AU174711             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTGTCAATGCTGAAGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCTAAGGCGGAGTGGCTATATCCATGTACGGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGCATTAATCGAGAAGAAATCTTGCATTAATCGAGAAGATATGCTGAGATACTTAATGGAACATGCNCCGCAAGTTTTTGTTGACATTCATATTTGGCAACTGAATAGGGCTACAGGAGTGAAAAAAAATTGCATGTCTACTAATATTAGCAAATTGCATCCTTTGCCAGCTGAGTAATATGAATTGTGTTAATGCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTTTTTAAAAAaaa                               ]
[-] EMBL CB639139             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGCATTAATCGAGAAGAAATCTTGCATTAATCGAGAAGATATGCTGAGATACTTAATGGAACATGCACCGCAAGTTTTTGTTGACATTCATATTTGGCAACTGAATAGGGCTACAGGAGTGAAAAAAAATTGCATGTCTACTAATATTAGCAAATTGCATCCTTTGCCAGCTGAGTAATATGAATTGTGTTAATGCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTTTTTAACAAGTTTATGAAAGCTTGGGTAGTATA GCATGAT  ]




>consensus_13099#0
CAGCGCCGCCGTCGCGTCGCGCCGATCTCCACATCACCGGCGGCGACTTGCGAGCACCGT
GCCGGGCGCCTACTGCTTCCGGCGCGTACTCGACTCCTTGCGCCAAAGTCAATCTCCCCT
CGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGTTCGCCCCGCCCCGCC
GCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACGGACGGGAG
CATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGGAAGATGATGAGAAAC
AACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCT
AACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGA
AATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTG
AATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTT
AATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGGGCGA
ACGAGACTGTTTGCATGCACGGGTACAATTATGGAGTATGGACCATCTAAAATGAGCATT
CTGACTTCCGCTAGTTTGGTTAGATGCACTAAAGATGAAAACAAGACAGATGAAAAATTA
AAGATTAAGGTGCGCCTACCCAATGGCAAGCTTACCGAAGGAAAACTGTGGAACTATGAT
TTATATTATAATATTGCTGTTGTCAAAATCAAGTATTTCCCAGAACTTAGTACAGCACAG
ATACATAATCAAGGGCAATCTAATGTTAAATTATCTCAAAGTAAACTGGTCGCTGTTGGA
CGTGGCTATGAATCTGGAGAACTAATGGCTACAGGTGGGACACTGCTGTACAAACCTAGC
AAACTTGACTGCAAGGAACTCATGACCTCCACTTGTAAGATCACAAAGGCTGGGATTGGT
GGTCCCCTTGTTGGGTTTGATGGAAACTTTGTTGGCATGAACTTTTGTGATAAGAAGGAA
ACTCCTTTCTTACCAATCAATATAATTCGGAAATGTTTAAAGCACTTTGATATGTTTGGG
AGAGTTGTTCAGCCATGGCTTGGCCTGAGGATTGGATCACTGAAACATGAAAAACTGGAT
ATCCGTGAACAAATACATGGAAGCTTCTCCAACACAGGTGGCATTTATGTAAAAGAGGTT
TTTGATGGATCCCCAGCAGCAGATTCTGGAATCAACGTTGGTGATGTTATTACCAAGCTT
GATGGAGTCGATCTATTCCATGCACAAGAGTTCTATGAGCTTATTTTGGGGAAATCAGAA
GATATTTTGCGACGTGATGAAGAGATGCTTTTCAAGGTGTCTATTCTAAGGCCAAGTAAC
GGTTAACCTTCCGTGCAATTGTCAATGCTGAAGTGGTTGACATGAGTAGGAAGAACAGAT
GGCCTGTACCTAAGGCGGAGTGGCTATATCCATGTACGGACGATAGATGTGATGAAATTG
TCGCGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTG
ATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGCATTAAT
CGAGAAGAAATCTTGCATTAATCGAGAAGATATGCTGAGATACTTAATGGAACATGCACC
GCAAGTTTTTGTTGACATTCATATTTGGCAACTGAATAGGGCTACAGGAGTGAAAAAAAA
TTGCATGTCTACTAATATTAGCAAATTGCATCCTTTGCCAGCTGAGTAATATGAATTGTG
TTAATGCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTTTTTAACAAGTTTA
TGAAAGCTTGGGTAGTATAGCATGATGT

consensusID : consensus_13099#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 838
fasta sequence

                              [TCATCTGCGAAATTTTGAGATATATGCAGGAGAGTTGTTCAGCCATGGCTTGGCCTGAGGATTGGATCACTGAAACATGAAAAACTGGATATCCGTGAACAAATACATGGAAGCTTCTCCAACACAGGTGGTATTTATGTAAAAGAGGTTTTTGATGGATCCCCAGCAGCAGATTCTGGAATCAACGTTGGTGATGTTATTACCAAGCTTGATGGAGTCGATCTATTCCATGCACAAGAGTTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCTTTTCAAGGTGTCTATTCTAAGGCCAAGTAACGGTGTAACGTTCGGTGCA-ATTGTCA-ATGCTGATGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCCAAGGCGGAGTGGCTATATCCATGTACGGATGATAGATGTGATGAAATTGCCGTGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGCAAAGTTCGAGAAGACATGCTGAGATACTTAATGGAACATATGCACCGCAAGTTTTTGTTGACAGATTCATATTTGGCAACTGGATAGTGCTACAGGAGTGAAAAAAAACTGCATGTCTACTAATATTAGTAAATTGCATCCTTTGCCAGCTGAGTAATATGAAGTGTGTTAAC-GCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTTTATAACAAGTTTATGAGAAGCTTGGGTAGTATAGCATGATTTCTTTCAAAAAAAAAGA]

[-] EMBL CB629759             [TCATCTGCGAAATTTTGAGATATATGCAGGAGAGTTGTTCAGCCATGGCTTGGCCTGAGGATTGGATCACTGAAACATGAAAAACTGGATATCCGTGAACAAATACATGGAAGCTTCTCCAACACAGGTGGTATTTATGTAAAAGAGGTTTTTGATGGATCCCCAGCAGCAGATTCTGGAATCAACGTTGGTGATGTTATTACCAAGCTTGATGGAGTCGATCTATTCCATGCACAAGAGTTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCTTTTCAAGGTGTCTATTCTAAGGCCAAGTAACGGTGTAACGTTCGGTGCA ATTGTCA ATGCTGATGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCCAAGGCGGAGTGGCTATATCCATGTACGGATGATAGATGTGATGAAATTGCCGTGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGCAAAGTTCGAGAAGACATGCTGAGATACTTAATGGAACATATGCACCGCAAGTTTTTGTTGACAGATTCATATTTGGCAACTGGATAGTGCTACAGGAGTGAAAAAAAACTGCATGTCTACTAATATTAGTAAATTGCATCCTTTGCCAGCTGAGTAATATGAAGTGTGTTAAC GCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTTTATAACAAGTTTATGAGAAGCTTGGGTAGTATAGCATGATTTCTTTCAAAAAAAAAGA]
[+] EMBL BM418936             [                                                                                                                                                                                                                                                                                                                                                 acTTCGGT CACATTGTCACATGCTGATGTGGTTGACATGAGTAGGAAGAACAGATGCCCTGTACCCAAGGCGGAGTGGCTATATCCATGTACGGATGATAGATGTGATGAAATT CCGTGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGTGAAGAATGAGGTGGAGAAATCTTGC AAGTTCGAGAAGACATGCTGAGATACTTAATGGAACATATGC CCGCAAGTTTTTGTTGACAGATTCATATTTGGC ACTGGATAGTGCTACCGGAGTGAAAAAAAACTGCATGTCTACTAATATTAGTAAATTGCATCCTTTGCCNGCTGAGTAATATGAAGTGTGTTAACNCCGGAGTTGTTCCAGCCAGATGTTTTGTTTGGCTTTTCTGTTTATAACCAGTTTATGA AAGCTTGGGTAGTATAGCAaaaaaaaaa             ]




>consensus_13099#1
TCATCTGCGAAATTTTGAGATATATGCAGGAGAGTTGTTCAGCCATGGCTTGGCCTGAGG
ATTGGATCACTGAAACATGAAAAACTGGATATCCGTGAACAAATACATGGAAGCTTCTCC
AACACAGGTGGTATTTATGTAAAAGAGGTTTTTGATGGATCCCCAGCAGCAGATTCTGGA
ATCAACGTTGGTGATGTTATTACCAAGCTTGATGGAGTCGATCTATTCCATGCACAAGAG
TTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCTT
TTCAAGGTGTCTATTCTAAGGCCAAGTAACGGTGTAACGTTCGGTGCAATTGTCAATGCT
GATGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCCAAGGCGGAGTGGCTATAT
CCATGTACGGATGATAGATGTGATGAAATTGCCGTGCCTGATCCGATAGTTATTCGAACC
TGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGT
GAAGAATGAGGTGGAGAAATCTTGCAAAGTTCGAGAAGACATGCTGAGATACTTAATGGA
ACATATGCACCGCAAGTTTTTGTTGACAGATTCATATTTGGCAACTGGATAGTGCTACAG
GAGTGAAAAAAAACTGCATGTCTACTAATATTAGTAAATTGCATCCTTTGCCAGCTGAGT
AATATGAAGTGTGTTAACGCGGAGTTGTTCCAGCAAGATGTTTTGTTTGGCTTTTCTGTT
TATAACAAGTTTATGAGAAGCTTGGGTAGTATAGCATGATTTCTTTCAAAAAAAAAGA

consensusID : consensus_13099#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [AAGTCAATCTCCCCTCGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGTTCGCCCCGCCCCGCCGCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACGGACGGGAGCATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGGAAGATGATGAGAAACAACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGTCCTGTACAGGGCGAACGAGACTGTTTGCATGCACGGGTACAATTATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTTCGCTAGTTTGGTTAGATGCACTAAAGATGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCA]

[+] EMBL CB663939             [AAGTCAATCTCCCCTCGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGTTCGCCCCGCCCCGCCGCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACGGACGGGAGCATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGGAAGATGATGAGAAACAACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGGAAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACACGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGATGGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCTTCGTTTAAGGTCCTGTACAGGGCGAACGAGACTGTTTGCATGCACGGGTACAATTATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTTCGCTAGTTTGGTTAGATGCACTAAAGATGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCA]




>consensus_13099#2
AAGTCAATCTCCCCTCGCACCGTCTTCTCGGCCTCAGACTCCCTTCTCCGACTCGCTAGT
TCGCCCCGCCCCGCCGCGCCTCGCCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCC
CGCGACGGACGGGAGCATCCGTCGGGTGCCGTCGTCCTGCTGCCTCCGCCTCCGGTTCGG
AAGATGATGAGAAACAACCAAAACACACAAGTAGAAGGAGCAAGCGCAACTAAGAAGCGG
AAGACCTCATACTCTAACTCCAACAGAGAAGATTCGTCACCAGTTGTGGATGGCCTCACA
CGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGAT
GGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGCAATGAA
GAATACAGCAAAGTTAATTTAGTTGCTCTAAGAATATCTCAGTCCGTTGTCTCACTTGCT
TCGTTTAAGGTCCTGTACAGGGCGAACGAGACTGTTTGCATGCACGGGTACAATTATGGA
GTATGGACCATCTAAAATGAGCATTCTGACTTTCGCTAGTTTGGTTAGATGCACTAAAGA
TGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13099#0      -----------------------------------------------CAGCGCCGCCGTC 13
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      TCATCTGCGAAATTTTGAGATATATGCAGGAGAGTTGTTCAGCCATGGCTTGGCCTGAGG 60
                                                                                   

consensus_13099#0      GCGTCGCGCCGATCTCCACATCACCGGCGGCGACTTGCGAGCACCGTGCCGGGCGCCTAC 73
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ATTGGATCACTGAAACATGAAAAACTGGATATCCGTGAACAAATACATGGAAGCTTCTCC 120
                                                                                   

consensus_13099#0      TGCTTCCGGCGCGTACTCGACTCCTTGCGCCAAAGTCAATCTCCCCTCGCACCGTCTTC- 132
consensus_13099#2      --------------------------------AAGTCAATCTCCCCTCGCACCGTCTTC- 27
consensus_13099#1      AACACAGGTGGTATTTATGTAAAAGAGGTTTTTGATGGATCCCCAGCAGCAGATTCTGGA 180
                                                          *  *** **    ***   ***   

consensus_13099#0      -TCGGCCTCAG--ACTCCCTTCTCCGACTCGCTAGT-TCGCCCCGCCCCGCCGCGCCTCG 188
consensus_13099#2      -TCGGCCTCAG--ACTCCCTTCTCCGACTCGCTAGT-TCGCCCCGCCCCGCCGCGCCTCG 83
consensus_13099#1      ATCAACGTTGGTGATGTTATTACCAAGCTTGATGGAGTCGATCTATTCCATGCACAAGAG 240
                        **  * *  *  *     **  *   ** * * *  ***  *    **          *

consensus_13099#0      CCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACG-GACGGGAGCATCCGT 247
consensus_13099#2      CCCTCGCCTCGCCGCCTGCGCCGGTTTCCATCCATCCCGCGACG-GACGGGAGCATCCGT 142
consensus_13099#1      TTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCTT 300
                         **     *      ** *    *    *   **   ****** ** *     ** * *

consensus_13099#0      CGGGTGCCGTC-GTCCTGCTGCCT-----CCGCCTCCGGTTCGGAA-GATGATGAGAAAC 300
consensus_13099#2      CGGGTGCCGTC-GTCCTGCTGCCT-----CCGCCTCCGGTTCGGAA-GATGATGAGAAAC 195
consensus_13099#1      TTCAAGGTGTCTATTCTAAGGCCAAGTAACGGTGTAACGTTCGGTGCAATTGTCAATGCT 360
                            *  ***  * **   ***      * *  *   ******    **  * *     

consensus_13099#0      AACCAAAAC-ACACAAGTAGAAGGAGCAAGCG-----CAACTAAGA---AGCGGAAGACC 351
consensus_13099#2      AACCAAAAC-ACACAAGTAGAAGGAGCAAGCG-----CAACTAAGA---AGCGGAAGACC 246
consensus_13099#1      GATGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCCAAGGCGGAGTGGCTATAT 420
                        *        ***  ***** * ** **   *      * * ***    ** **      

consensus_13099#0      TCATACTCTAACTCCAACAGAGA--AGATT--CGTCACCAGTT--GTGGATGGCCTCACA 405
consensus_13099#2      TCATACTCTAACTCCAACAGAGA--AGATT--CGTCACCAGTT--GTGGATGGCCTCACA 300
consensus_13099#1      CCATGTACGGATGATAGATGTGATGAAATTGCCGTGCCTGATCCGATAGTTATTCGAACC 480
                        ***   *  *    *   * **  * ***  ***  *   *    * * *   *  ** 

consensus_13099#0      CGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGAT 465
consensus_13099#2      CGCATATTGCGCAGAAATCTTCTCCCCCGTGGTTATCCTATGCCATCTGAGTTCACTGAT 360
consensus_13099#1      TGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTA--AGACTATATTACG 538
                        *   *    **    ** * * * *** ** * *  **   * *   ** *  * *   

consensus_13099#0      GGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGC--AATG 523
consensus_13099#2      GGTATGCACATGGTGAATAACTTTGAAGAATCTTTTGGAGACTTGGATGACTGC--AATG 418
consensus_13099#1      GTGAAGAATGAGGTGGAGAAATCTTGCAAAGTTCGAGAAGACATGCTGAGATACTTAATG 598
                       *  * * *   **** * ** * *    **  *   * **** **      * *  ****

consensus_13099#0      AAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAAT-ATCTCAGTCCGTTGTCTCAC-T 581
consensus_13099#2      AAGAATACAGCAAAGTTAATTTAGTTGCTCTAAGAAT-ATCTCAGTCCGTTGTCTCAC-T 476
consensus_13099#1      GAACATAT-GCACCGCAAGTTT--TTGTTGACAGATTCATATTTGGCAACTGGATAGTGC 655
                        *  ***  ***  *  * ***  *** *   *** * ** *  * *   **  *     

consensus_13099#0      TGCTTCGTTTAAGG----------GGCGAACGAGACTGTTTGCATGCACGGGTA--CAAT 629
consensus_13099#2      TGCTTCGTTTAAGGTCCTGTACAGGGCGAACGAGACTGTTTGCATGCACGGGTA--CAAT 534
consensus_13099#1      TACAGGAGTGAAAAAAAACTGCATGTCTACTAATATTAGTAAATTGCATCCTTTGCCAGC 715
                       * *     * **            * * *   * * *  *    ****    *   **  

consensus_13099#0      TATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTCCGCTAGTTTGGTTAGATGCAC 689
consensus_13099#2      TATGGAGTATGGACCATCTAAAATGAGCATTCTGACTTTCGCTAGTTTGGTTAGATGCAC 594
consensus_13099#1      TGAGTAATATGAAGTGTGTTAACGCGGAGTTGTTCCAGCAAGATGTTTTGTTTG--GCTT 773
                       *  * * **** *   * * **    *  ** *  *        **** *** *  **  

consensus_13099#0      TAAAGATGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCAATGGCAA 749
consensus_13099#2      TAAAGATGAAAACAAGACAGATGAAAAATTAAAGATTAAGGTGCGCCTACCCA------- 647
consensus_13099#1      TTCTGTTTATAACAAGTTTATGAGAAGCTTGGGTAGTATAGCATGATTTCTTTCAAAAAA 833
                       *   * * * ******        **  **    * **  *   *  * *          

consensus_13099#0      GCTTACCGAAGGAAAACTGTGGAACTATGATTTATATTATAATATTGCTGTTGTCAAAAT 809
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      AAAGA------------------------------------------------------- 838
                                                                                   

consensus_13099#0      CAAGTATTTCCCAGAACTTAGTACAGCACAGATACATAATCAAGGGCAATCTAATGTTAA 869
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      ATTATCTCAAAGTAAACTGGTCGCTGTTGGACGTGGCTATGAATCTGGAGAACTAATGGC 929
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      TACAGGTGGGACACTGCTGTACAAACCTAGCAAACTTGACTGCAAGGAACTCATGACCTC 989
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      CACTTGTAAGATCACAAAGGCTGGGATTGGTGGTCCCCTTGTTGGGTTTGATGGAAACTT 1049
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      TGTTGGCATGAACTTTTGTGATAAGAAGGAAACTCCTTTCTTACCAATCAATATAATTCG 1109
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      GAAATGTTTAAAGCACTTTGATATGTTTGGGAGAGTTGTTCAGCCATGGCTTGGCCTGAG 1169
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      GATTGGATCACTGAAACATGAAAAACTGGATATCCGTGAACAAATACATGGAAGCTTCTC 1229
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      CAACACAGGTGGCATTTATGTAAAAGAGGTTTTTGATGGATCCCCAGCAGCAGATTCTGG 1289
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      AATCAACGTTGGTGATGTTATTACCAAGCTTGATGGAGTCGATCTATTCCATGCACAAGA 1349
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      GTTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGACGTGATGAAGAGATGCT 1409
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      TTTCAAGGTGTCTATTCTAAGGCCAAGTAACGGTTAACCTTCCGTGCAATTGTCAATGCT 1469
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      GAAGTGGTTGACATGAGTAGGAAGAACAGATGGCCTGTACCTAAGGCGGAGTGGCTATAT 1529
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      CCATGTACGGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACC 1589
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      TGTGAAGATAGCTATTATTTACCCGCCCTTGATGAGTCTGAACTAAGACTATATTACGGT 1649
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      GAAGAATGAGGTGGAGAAATCTTGCATTAATCGAGAAGAAATCTTGCATTAATCGAGAAG 1709
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      ATATGCTGAGATACTTAATGGAACATGCACCGCAAGTTTTTGTTGACATTCATATTTGGC 1769
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      AACTGAATAGGGCTACAGGAGTGAAAAAAAATTGCATGTCTACTAATATTAGCAAATTGC 1829
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      ATCCTTTGCCAGCTGAGTAATATGAATTGTGTTAATGCGGAGTTGTTCCAGCAAGATGTT 1889
consensus_13099#2      ------------------------------------------------------------
consensus_13099#1      ------------------------------------------------------------
                                                                                   

consensus_13099#0      TTGTTTGGCTTTTCTGTTTTTAACAAGTTTATGAAAGCTTGGGTAGTATAGCATGATGT 1948
consensus_13099#2      -----------------------------------------------------------
consensus_13099#1      -----------------------------------------------------------