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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence
[ACTCTCGAGTTTTTTTTTTTTTTTTTTTCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACACAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATGCCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACSCCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCCTCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGCGTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT]
[+] EMBL BP432967 [ACTCTCGAGTTTTTTTTTTTTTTTTTTTCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACACAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATGCCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACSCCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCCTCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGCGTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCG ]
[+] EMBL AU070876 [ GGCCGTGGCGTCGCTGACGGTGAAGTCGT GGTCGTACACGGCGTA CGGCAGCCGTCGGCGGGGAGGCTGGCGGTGAGCTCGTCGAAGCCGGCGTCGCGTGGGCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT]
consensusID : consensus_13100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 376 fasta sequence
[TTTTTTTTTTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAG]
[-] EMBL CF312991 [TTTTTTTTTTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCTGTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGTCTGAAGAAACAATTAG]
[-] EMBL CF312836 [ TTTTTCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAgtttctact ]
consensusID : consensus_13100#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 344 fasta sequence
[TTTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCAC]
[+] EMBL CF310858 [TTTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGC ]
[-] EMBL CF310859 [ TTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCA ]
[-] EMBL CF311643 [ TTTTTTTTAAGGTGCAAGCGCGATCGACCGATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCA ]
[-] EMBL CF311349 [ tttttACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCAC]
[+] EMBL CF311350 [ ttttttACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACGCCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACGTCCGCCGCCGCCGGCGACCA ]
consensusID : consensus_13100#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 264 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCAC------TTTCTACTCC-TCAGTCCTTG]
[-] EMBL CA754422 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTA ]
[+] EMBL CF312837 [ TTTTTTCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCACGTCGAGTTTCTACTCCTTCAGTCCT ]
[-] EMBL CF308179 [ ttTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACACAATCCAAACACCAAGCAAGCCGTACAAACCACACATACACATGGGCTGCAATGCCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGTCCTTGAGCAC TTTCTACTCC TCAGTCCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13100#1 ----------------------------------------------------TTTTTTTT 8
consensus_13100#3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_13100#0 ---------------------------------ACTCTCGAGTTTTTTTTTTTTTTTTTT 27
consensus_13100#2 ------------------------------TTTTTTTTTAAGGTGCAAGCGCGATCGACC 30
*
consensus_13100#1 TTTTACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 68
consensus_13100#3 TTTNACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 120
consensus_13100#0 --TCNCCGGTTTAATCGNCTNTTTATTATTCNCGTAATGTAAATTAACCACACACGTACA 85
consensus_13100#2 GATCACCGGTTTAATCGTCTCTTTATTATTCGCGTAATGTAAATTAACCACACACGTACA 90
* ************ ** ********** ****************************
consensus_13100#1 CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 122
consensus_13100#3 CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 174
consensus_13100#0 CAATTCCAAACACCAARMMAGCCGGTACAAANCCCACAACAWACACATGGGCTGCAAATG 145
consensus_13100#2 CAAT-CCAAACACCAAGCAAGCCG-TACAAACCACA---CATACACATGGGCTGCAA-TG 144
**** *********** ***** ****** * ** ** *************** **
consensus_13100#1 CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 182
consensus_13100#3 CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 234
consensus_13100#0 CCAAMGKWAWTACTTGGAAAATCGAGGTAATTAACGGCGNGATTAATTAGGAGGTGTGGT 205
consensus_13100#2 CCAACGTAATTACTTGGAAAATCGAGGTAATTAACGGCGTGATTAATTAGGAGGTGTGGT 204
**** * * ***************************** ********************
consensus_13100#1 CCTTGAGCACGTCGACCACCTGCCGCATCGCG-TCGTCGATCTTGAACACCACGAACCTG 241
consensus_13100#3 CCTTGAGCACTTTCTACTCCTCAGTCCTTG------------------------------ 264
consensus_13100#0 CCTTGAGCACGTCGAAGGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACS 265
consensus_13100#2 CCTTGAGCACGTCGA-GGGTGAGCTCGCTGGGGTCGGTGGCCTGCAGGTCGATCTGGACG 263
********** * * *
consensus_13100#1 TGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCACA 301
consensus_13100#3 ------------------------------------------------------------
consensus_13100#0 CCGTCRAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACG 325
consensus_13100#2 CCGTCGAGCTCCTTCTTGAACCCTTCGTTGGAGCTCGCGTACACCATCTTGCTCCTCACG 323
consensus_13100#1 CCCGACGTCGCGTTCG-CCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGT 360
consensus_13100#3 ------------------------------------------------------------
consensus_13100#0 TCCGCCGCCGCCGGCGACCACGACACGAARAARATCTTGCTGCGCGGSGCCTCGCCGCCC 385
consensus_13100#2 TCCGCCGCCGCCGGCGACCAC--------------------------------------- 344
consensus_13100#1 CTGAAGAAACAATTAG-------------------------------------------- 376
consensus_13100#3 ------------------------------------------------------------
consensus_13100#0 TCGCCGGCGGCCGCCGTGGCCGTGGCGTCGCTGACGGTGAARTCGTGGGTCGTACACGGC 445
consensus_13100#2 ------------------------------------------------------------
consensus_13100#1 ------------------------------------------------------------
consensus_13100#3 ------------------------------------------------------------
consensus_13100#0 GTARCGGCAGCCGTCGGCGGGGAGGYKGGCGGTGAGCTCGTCGAARCCSGCGTCGCGTGG 505
consensus_13100#2 ------------------------------------------------------------
consensus_13100#1 ------------------------------------------------------------
consensus_13100#3 ------------------------------------------------------------
consensus_13100#0 GCCCACCCTGTCGACCACCACCTGCCGCATCGCGTCGTCGATCTTGAACACCACGAACCT 565
consensus_13100#2 ------------------------------------------------------------
consensus_13100#1 ------------------------------------------------------------
consensus_13100#3 ------------------------------------------------------------
consensus_13100#0 GTGGGCCCGCCCCGCCCTCAGCTCCTGGAACCTCGCCTTGCACTCCTCGCTCACCGCCAC 625
consensus_13100#2 ------------------------------------------------------------
consensus_13100#1 ------------------------------------------------------------
consensus_13100#3 ------------------------------------------------------------
consensus_13100#0 ACCCGACGTCGCGTTCGCCATGTTTCGTTCGAAGTGTCCTGGAGAATGCTCTGAAGAAGT 685
consensus_13100#2 ------------------------------------------------------------
consensus_13100#1 --------------------------------------------
consensus_13100#3 --------------------------------------------
consensus_13100#0 CTGAAGAAACAATTAGTTGGATTCTGCAATGGTCGATNAGAAGT 729
consensus_13100#2 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||