These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 611 fasta sequence [CTCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC-GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGCAACAGTGAGAATAATCATATCGTTTNTGCGCCCTGTAGACATGTCAGGTGCTTAATATNTGTAANAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCCCTTTACTTTTATTTNTGCCAGAGGCATTGAACTCTNTACATCTGGGTTNGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCCCGGAAAAAAAAAAAAAA] [+] EMBL CF327288 [CTCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC ] [+] EMBL AK062186 [ TCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC ] [+] EMBL AK120450 [ CCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC ] [+] EMBL BE039903 [ ccgCCGCCGCCGCCGCCCTCCTCCGCGCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGTGGTCGCGTCGCCTCGCCGGGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCACTGTACTGGTCAATACTTCGATTATTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC ] [+] EMBL BE039904 [ ccgCCGCCGCCGCCGCCCTCCTCCGCGCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGTGGTCGCGTCGCCTCGCCGGGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCACTGTACTGGTCAATACTTCGATTATTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC ] [+] EMBL C27479 [ CCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAA GCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGCA ] [+] EMBL AU181760 [ TGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTNAAGATGATNAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTNTCTCTTGCTACCGTTTACGCAACAGTGAGAATAATCATATCGTTTNTGCGCCCTGTAGACATGTCAGGTGCTTAATATNTGTAANAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCCCTTTACTTTTATTTNTGCCAGAGGCATTGAACTCTNTACATCTGGGTTNGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCCCGGAAAAAAAAAAAAAA] consensusID : consensus_13104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [CCAGAGGTCGAGACAAGGGGATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGCCAGTTTTTCATCCACCCCTTTACTTTTATTTGTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTATTGCGGTATTGGCTCGTGCTTTTTCCCTTTCGGTTTATAATTGATATATCCCTAGATTGTGAATGAGCACGGAATGCTGTCATTTGCCTTTTCCATATTGCCTGTCTTGTTTTTTGCACGTCTGCCACTGTCTGGATTTGTGTACCGGGTTAAAAAAACCCCGAGCTGGCAATAACGATTTTTTATCTTTGGTGTCAAAAAAAAAAAAAA] [-] EMBL CA760498 [CCAGAGGTCGAGACAAGGGGATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGCCAGTTTTTCATCCACCCCTTTACTTTTATTTGTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTATTGCGGTATTGGCTCGTGCTTTTTCCCTTTCGGTTTATAATTGATATATCCCTAGATTGTGAATGAGCACGGAATGCTGTCATTTGCCTTTTCCATATTGCCTGTCTTGTTTTTTGCACGTCTGCCACTGTCTGGATTTGTGTACCGGGTTAAAAAAACCCCGAGCTGGCAATAACGATTTTTTATCTTTGGTGTCAAAAAAAAAAAAAA] consensusID : consensus_13104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 227 fasta sequence [GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTG-AATGAGCAC-GGAATGCTGTCATTTGCCTTTT-CCAAAAAA] [+] EMBL AU165655 [GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCACTTTACTTTTATTTCTGCCAGAGG ATTGAACTCTCTACATCTGGGTTCGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGNAATGAGCACGGGAATGCTGTCATTTGCCTTTTNCCAAAAA ] [+] EMBL AU057763 [GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTG AATGAGCAC GGAATGCTGTCATTTGCCTTTT CCAAAAAA] [+] EMBL BI799479 [GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCACCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTACTGCGTTATTGGCTCGTGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTG AATGAGCAaaaaaaaaa ] [+] EMBL AU165039 [ gCATGTCGGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCACCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTACTGCGTTATTGGCTCGTGCTTTTTCCCTTTCGGTTCGTAATTGATATATCCCCAGATTGTG AATGAGCAC GGAATGCTGTCATTTGCCTTTT CCAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13104#0 CTCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGA 60 consensus_13104#2 ------------------------------------------------------------ consensus_13104#1 ------------------------------------------------------------ consensus_13104#0 ATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCCGGCGGCCGTCGCGAGCATG 120 consensus_13104#2 ------------------------------------------------------------ consensus_13104#1 ------------------------------------------------------------ consensus_13104#0 TCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGT 180 consensus_13104#2 ------------------------------------------------------------ consensus_13104#1 ------------------------------------------------------------ consensus_13104#0 GTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGT 240 consensus_13104#2 ------------------------------------------------------------ consensus_13104#1 ------------------------------------------------------------ consensus_13104#0 CAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCC 300 consensus_13104#2 ------------------------------------------------------------ consensus_13104#1 ------------------------------------------------------------ consensus_13104#0 GAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACG 360 consensus_13104#2 ------------------------------------------------------------ consensus_13104#1 ------------------------------------------------------------ consensus_13104#0 CAACAGTGAGAATAATCATATCGTTTNTGCGCCCTGTAGACATGTCAGGTGCTTAATATN 420 consensus_13104#2 --------------------------------------GACATGTCAGGTGCTTAATATC 22 consensus_13104#1 --------------------------------CCAGAGGTCGAGACAAG-----GGGATC 23 * * * ** * ** consensus_13104#0 TGTAANAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCCCTTTACT 480 consensus_13104#2 TGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCACTTTACT 82 consensus_13104#1 TGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGCCAGTTTTTCATCCACCCCTTTACT 83 ***** ***************************** ********** ** ** ******* consensus_13104#0 TTTATTTNTGCCAGAGGCATTGAACTCTNTACATCTGGGTTNGTACTGCGTTATTGGCTC 540 consensus_13104#2 TTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCGTACTGCGTTATTGGCTC 142 consensus_13104#1 TTTATTTGTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTATTGCGGTATTGGCTC 143 ******* ******************** ************ ** **** ********* consensus_13104#0 ATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCCCGGAAA 600 consensus_13104#2 ATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCACGGAAT 202 consensus_13104#1 GTGCTTTTTCCCTTTCGGTTTATAATTGATATATCCCTAGATTGTGAATGAGCACGGAAT 203 ******************* **************** *************** ***** consensus_13104#0 AAAAAAAAAAA------------------------------------------------- 611 consensus_13104#2 GCTGTCATTTGCCTTTTCCAAAAAA----------------------------------- 227 consensus_13104#1 GCTGTCATTTGCCTTTTCCATATTGCCTGTCTTGTTTTTTGCACGTCTGCCACTGTCTGG 263 * consensus_13104#0 ------------------------------------------------------------ consensus_13104#2 ------------------------------------------------------------ consensus_13104#1 ATTTGTGTACCGGGTTAAAAAAACCCCGAGCTGGCAATAACGATTTTTTATCTTTGGTGT 323 consensus_13104#0 --------------- consensus_13104#2 --------------- consensus_13104#1 CAAAAAAAAAAAAAA 338 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||