Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13105 cluster # 13105       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13105#0 length = 1978 sequences # 3  
consensus_13105#1 length = 1502 sequences # 9  

consensusID : consensus_13105#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1978
fasta sequence
                              [CATTAAATGTTGAAAATGTAGCTATATTTTTCTGTAAGCTTATTCAGACTATAAGTTTGGCTTAGGATAAACCCAAAATGAGTTATAAAATGAAACGTAGGGAGTATTACTCTACTTGTTGTCGGACACAAGTTTTACCCGGATGCGGGTATTTTTTGCCCATGTAATCCTTGGGCGAACTGAGATCTAGTTAGATTATAAATTCTAGCTAGGGGTGCCAATGGGCAAATCCGTGCAAATTGACCTTGTGGGGGTGGCATGGTGGCAGCATGCACCACCTCTGCATTGGGAAAACGGCAGTGGGGCGCTGTTTTCATGGTCGGTGACTCTGCACCGGGAACATGGCACTATGCCACCGTCTTCTTGGGTGGCTCCATTTTCACTTGCCACTTGTCGATGGACGGCGTTGGAGCTGGAGCTGCTCCTGTCGGTGGTGTCTGTGAATGCCGCCTCTCTCTGCGCCTCCCTCTCCTCCGCGCTCATAGCGGCGAGGTGTCCTTCAAGCTCTCACTGCATGACCTCTCCGTCTTGCCTAACTGCCTGAGCAAGGAGTAGATCCGTAGCAGCAACTCGCTGCTTTCACTGCACCAGCGGTGTTGCCCAAGGTGAAGGCAGGGCAGGAATCAAGGGGCAGCAGCTTGATGCTTCTTGCCATCTTGCTGCTTGTGCACGGATCCAAGATGAAGCAGTTGATCGCTGCTTGACATACCCAGTGTGGCTGCGGTGGCGCCTCCTGCAGCTGCCTGGATGCAGTGCGTGGAAGAGGAACCAATGGTCCTACCATGGTCAAGGAAATGGATTGGGTTCGTTCATTTAAAACCAAGGAAACTCCTGCCCAAAACCAATCCAACCCAAACCTTCTCACTTACATACCCAAACCAGTCCACTCCAATTATCAAACATTTGAACCCACCCAAAACAAATACATTCTTAGGGCCTGTTCTAAAGTGTGGTTTGAAATGGATGATTAGCTGCACACAAAACGAGAAACATGATTAACATGATTAAAAACTTGAAAAATGATTTTTTTTTTTATTTTTAAAGCAACTTATATATTGAAAGTTTTCGTGCAAAACACACCGTTTAACAGGTTAAAAAGCGTGCTAACCAAAAATTGAAGAAGCAAGTTGAAGCGTAGTTTAGGACGCGCTCTTAAATCTGACCCCTTCCACCCATCTCAGTCCAATTCATTATCACCCCTAGTTCTAGCTAGCAGAATGTCTTCACAGTACAATGAGTTTTTTGTGTTTTGCAAACAATCTCTTGACCAAATAAGATCCTGGCTTTTAATTTTGACATGTTTTTGGAGGCCCAAGTCATGTGCATATTTATTTCCTTGCTATAGTAACTCTGGTGATTAATCAGACCAGTGTCATTCCTGGCAGCCTAATGTGATTAGCTATGTGGTATTTGCATCTTGTTAATTTTCTGCTTCCAGTGAGTTTCTGTAGTAAGTTACTTGAGAGATAGATATACTCATCTAGCCATGTGAAGTCAACGTCTGTAATTTGTAGGTACTGCTTATATATAAATGTTGAATAAGGTCTTCAAAAATGCGAAAATCGAACTGTGCAGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACACAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAAAAAAAAAAAAAAAAAAA]

[+] EMBL BE225321             [CATTAAATGTTGAAAATGTAGCTATATTTTTCTGTAAGCTTATTCAGACTATAAGTTTGGCTTAGGATAAACCCAAAATGAGTTATAAAATGAAACGTAGGGAGTATTACTCTACTTGTTGTCGGACACAAGTTTTACCCGGATGCGGGTATTTTTTGCCCATGTAATCCTTGGGCGAACTGAGATCTAGTTAGATTATAAATTCTAGCTAGGGGTGCCAATGGGCAAATCCGTGCAAATTGACCTTGTGGGGGTGGCATGGTGGCAGCATGCACCACCTCTGCATTGGGAAAACGGCAGTGGGGCGCTGTTTTCATGGTCGGTGACTCTGCACCGGGAACATGGCACTATGCCACCGTCTTCTTGGGTGGCTCCATTTTCACTTGCCACTTGTCGATGGACGGCGTTGGAGCTGGAGCTGCTCCTGTCGGTGGTGTCTGTGAATGCCGCCTCTCTCTGCGCCTCCCTCTCCTCCGCGCTCATAGCGGCGAGGTGTCCTTCAAGCTCTCACTGCATGACCTCTCCGTCTTGCCTAACTGCCTGAGCAAGGAGTAGATCCGTAGCAGCAACTCGCTGCTTTCACTGCACCAGCGGTGTTGCCCAAGGTGAAGGCAGGGCAGGAATCAAGGGGCAGCAGCTTGATGCTTCTTGCCATCTTGCTGCTTGTGCACGGATCCAAGATGAAGCAGTTGATCGCTGCTTGACATACCCAGTGTGGCTGCGGTGGCGCCTCCTGCAGCTGCCTGGATGCAGTGCGTGGAAGAGGAACCAATGGTCCTACCATGGTCAAGGAAATGGATTGGGTTCGTTCATTTAAAACCAAGGAAACTCCTGCCCAAAACCAATCCAACCCAAACCTTCTCACTTACATACCCAAACCAGTCCACTCCAATTATCAAACATTTGAACCCACCCAAAACAAATACATTCTTAGGGCCTGTTCTAAAGTGTGGTTTGAAATGGATGATTAGCTGCACACAAAACGAGAAACATGATTAACATGATTAAAAACTTGAAAAATGATTTTTTTTTTTATTTTTAAAGCAACTTATATATTGAAAGTTTTCGTGCAAAACACACCGTTTAACAGGTTAAAAAGCGTGCTAACCAAAAATTGAAGAAGCAAGTTGAAGCGTAGTTTAGGACGCGCTCTTAAATCTGACCCCTTCCACCCATCTCAGTCCAATTCATTATCACCCCTAGTTCTAGCTAGCAGAATGTCTTCACAGTACAATGAGTTTTTTGTGTTTTGCAAACAATCTCTTGACCAAATAAGATCCTGGCTTTTAATTTTGACATGTTTTTGGAGGCCCAAGTCATGTGCATATTTATTTCCTTGCTATAGTAACTCTGGTGATTAATCAGACCAGTGTCATTCCTGGCAGCCTAATGTGATTAGCTATGTGGTATTTGCATCTTGTTAATTTTCTGCTTCCAGTGAGTTTCTGTAGTAAGTTACTTGAGAGATAGATATACTCATCTAGCCATGTGAAGTCAACGTCTGTAATTTGTAGGTACTGCTTATATATAAATGTTGAATAAGGTCTTCAAAAATGCGAAAATCGAACTGTGCAGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACACAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAAAAAAAAAAAAAAAAAAA]
[+] EMBL BF430502             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACACAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTG                          ]
[+] EMBL AA749571             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACACAAACTTTGCATATTACNGGGAAGTCGGAAAAAACATCTGTTATTCATCNCNCTGGAA                                                                ]


>consensus_13105#0 CATTAAATGTTGAAAATGTAGCTATATTTTTCTGTAAGCTTATTCAGACTATAAGTTTGG CTTAGGATAAACCCAAAATGAGTTATAAAATGAAACGTAGGGAGTATTACTCTACTTGTT GTCGGACACAAGTTTTACCCGGATGCGGGTATTTTTTGCCCATGTAATCCTTGGGCGAAC TGAGATCTAGTTAGATTATAAATTCTAGCTAGGGGTGCCAATGGGCAAATCCGTGCAAAT TGACCTTGTGGGGGTGGCATGGTGGCAGCATGCACCACCTCTGCATTGGGAAAACGGCAG TGGGGCGCTGTTTTCATGGTCGGTGACTCTGCACCGGGAACATGGCACTATGCCACCGTC TTCTTGGGTGGCTCCATTTTCACTTGCCACTTGTCGATGGACGGCGTTGGAGCTGGAGCT GCTCCTGTCGGTGGTGTCTGTGAATGCCGCCTCTCTCTGCGCCTCCCTCTCCTCCGCGCT CATAGCGGCGAGGTGTCCTTCAAGCTCTCACTGCATGACCTCTCCGTCTTGCCTAACTGC CTGAGCAAGGAGTAGATCCGTAGCAGCAACTCGCTGCTTTCACTGCACCAGCGGTGTTGC CCAAGGTGAAGGCAGGGCAGGAATCAAGGGGCAGCAGCTTGATGCTTCTTGCCATCTTGC TGCTTGTGCACGGATCCAAGATGAAGCAGTTGATCGCTGCTTGACATACCCAGTGTGGCT GCGGTGGCGCCTCCTGCAGCTGCCTGGATGCAGTGCGTGGAAGAGGAACCAATGGTCCTA CCATGGTCAAGGAAATGGATTGGGTTCGTTCATTTAAAACCAAGGAAACTCCTGCCCAAA ACCAATCCAACCCAAACCTTCTCACTTACATACCCAAACCAGTCCACTCCAATTATCAAA CATTTGAACCCACCCAAAACAAATACATTCTTAGGGCCTGTTCTAAAGTGTGGTTTGAAA TGGATGATTAGCTGCACACAAAACGAGAAACATGATTAACATGATTAAAAACTTGAAAAA TGATTTTTTTTTTTATTTTTAAAGCAACTTATATATTGAAAGTTTTCGTGCAAAACACAC CGTTTAACAGGTTAAAAAGCGTGCTAACCAAAAATTGAAGAAGCAAGTTGAAGCGTAGTT TAGGACGCGCTCTTAAATCTGACCCCTTCCACCCATCTCAGTCCAATTCATTATCACCCC TAGTTCTAGCTAGCAGAATGTCTTCACAGTACAATGAGTTTTTTGTGTTTTGCAAACAAT CTCTTGACCAAATAAGATCCTGGCTTTTAATTTTGACATGTTTTTGGAGGCCCAAGTCAT GTGCATATTTATTTCCTTGCTATAGTAACTCTGGTGATTAATCAGACCAGTGTCATTCCT GGCAGCCTAATGTGATTAGCTATGTGGTATTTGCATCTTGTTAATTTTCTGCTTCCAGTG AGTTTCTGTAGTAAGTTACTTGAGAGATAGATATACTCATCTAGCCATGTGAAGTCAACG TCTGTAATTTGTAGGTACTGCTTATATATAAATGTTGAATAAGGTCTTCAAAAATGCGAA AATCGAACTGTGCAGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATA AGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAG AACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTT GGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCG TTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACACAAA CTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAATGCGTC TGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13105#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1502
fasta sequence
                              [CTATTCCAGTCCACGACCGTCGGACCGAACCGAACCATCCAGAAGCAGCCGCCGCCCCAATTCTAAAGCATCTCCCCCCCACCCATCTCCGATCTCCACCCGCAGATCCAACGGAGACAAGCGCACCAAGCCCCCCCACCAAACCCTAATCCTCCTTCCCCCCCCTCCCATGGCGAAGTACGGAGAGGGCGACGCGCGGTGGATCGTGCAGGAGCGCGCCGACGGCACCAACGTCCACAACTGGCACTGGGCGGAGCGCGACTGCCTCGAGTGGTCCCGCTCCCGCCTCACCTCCCTCCTCGCCGGCCTCCCCGTCCTCTCCGGCGAGGGCGGCCTCGCCCTCCGCACCACCGCGCTCGACAAGCTCGACGGCGAGGCCTACGTCAACATCCGCAAGGGGAAGGTCATCCCGGGGTACGAGCTCTCCCTCACCCTCGCCTGGGAGGCCGAGGCCACCACCGAGTCCGGCGTCGTCAAGGTCTCCGGCGCCGCCGAGGTGCCCTACCTCGCCGACGAGAACGCCGACGAGGACCCGGAGCTCCGCGTCACCGTCCGCGGCGACGATGGCCCCGTCGCCCGCCGCGCCAAGGACGCCTTCCTCACCAAGGGCAAGCCTCTGGTCCTCGAGAAGATCCGGGAGTACGTCGCCGCCATGGCGAAGGGCGGCCCGGCTAAGGACGAGCTGGATTCCAAGAAGACCCCCACCAAGGCCGCGGCGGTAGAGGCCGGTGGCGCGGCCACCGCGCCTGCCCCTGCGGCGGAGAAGAAGGAGGAGGCGCCGGCCGTGAAGGAGAAGAAGGCGAAGGCGAAGGACAAGGAAGGATTCAAGACGATCGAGATGACGGAGAAATTCTACTGCCGTGCGAAGGACATGTATGAGATCTTGATGGATGAGAACAGATGGAAGGGGTTCACGC-AGAGCAATGCGAGG-ATAAGCA-GA-GAGGTCGGAGGGCAGTTCAGCCTCTTCGATGGGTCAATCAGCGGCGTCAATGAGGAGTTGCAGGAAGGGAAGCTGATCGTGCAGAAGTGGCGGTTCGGTAGCTGGCCAGACGGCGTGCACTCGACGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACAGAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAGTAACCTTGTGTTGTGTTGGTTGACTCCTTGATTGTTCTGCAAAAAAAAAA]

[+] EMBL AK059195             [CTATTCCAGTCCACGACCGTCGGACCGAACCGAACCATCCAGAAGCAGCCGCCGCCCCAATTCTAAAGCATCTCCCCCCCACCCATCTCCGATCTCCACCCGCAGATCCAACGGAGACAAGCGCACCAAGCCCCCCCACCAAACCCTAATCCTCCTTCCCCCCCCTCCCATGGCGAAGTACGGAGAGGGCGACGCGCGGTGGATCGTGCAGGAGCGCGCCGACGGCACCAACGTCCACAACTGGCACTGGGCGGAGCGCGACTGCCTCGAGTGGTCCCGCTCCCGCCTCACCTCCCTCCTCGCCGGCCTCCCCGTCCTCTCCGGCGAGGGCGGCCTCGCCCTCCGCACCACCGCGCTCGACAAGCTCGACGGCGAGGCCTACGTCAACATCCGCAAGGGGAAGGTCATCCCGGGGTACGAGCTCTCCCTCACCCTCGCCTGGGAGGCCGAGGCCACCACCGAGTCCGGCGTCGTCAAGGTCTCCGGCGCCGCCGAGGTGCCCTACCTCGCCGACGAGAACGCCGACGAGGACCCGGAGCTCCGCGTCACCGTCCGCGGCGACGATGGCCCCGTCGCCCGCCGCGCCAAGGACGCCTTCCTCACCAAGGGCAAGCCTCTGGTCCTCGAGAAGATCCGGGAGTACGTCGCCGCCATGGCGAAGGGCGGCCCGGCTAAGGACGAGCTGGATTCCAAGAAGACCCCCACCAAGGCCGCGGCGGTAGAGGCCGGTGGCGCGGCCACCGCGCCTGCCCCTGCGGCGGAGAAGAAGGAGGAGGCGCCGGCCGTGAAGGAGAAGAAGGCGAAGGCGAAGGACAAGGAAGGATTCAAGACGATCGAGATGACGGAGAAATTCTACTGCCGTGCGAAGGACATGTATGAGATCTTGATGGATGAGAACAGATGGAAGGGGTTCACGC AGAGCAATGCGAGG ATAAGCA GA GAGGTCGGAGGGCAGTTCAGCCTCTTCGATGGGTCAATCAGCGGCGTCAATGAGGAGTTGCAGGAAGGGAAGCTGATCGTGCAGAAGTGGCGGTTCGGTAGCTGGCCAGACGGCGTGCACTCGACGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACAGAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTG                                                           ]
[+] EMBL AK102612             [                                                                                                             gACGGAGACAAGCGCACCAAGCCCCCCCACCAAACCCTAATCCTCCTTCCCCCCCCTCCCATGGCGAAGTACGGAGAGGGCGACGCGCGGTGGATCGTGCAGGAGCGCGCCGACGGCACCAACGTCCACAACTGGCACTGGGCGGAGCGCGACTGCCTCGAGTGGTCCCGCTCCCGCCTCACCTCCCTCCTCGCCGGCCTCCCCGTCCTCTCCGGCGAGGGCGGCCTCGCCCTCCGCACCACCGCGCTCGACAAGCTCGACGGCGAGGCCTACGTCAACATCCGCAAGGGGAAGGTCATCCCGGGGTACGAGCTCTCCCTCACCCTCGCCTGGGAGGCCGAGGCCACCACCGAGTCCGGCGTCGTCAAGGTCTCCGGCGCCGCCGAGGTGCCCTACCTCGCCGACGAGAACGCCGACGAGGACCCGGAGCTCCGCGTCACCGTCCGCGGCGACGATGGCCCCGTCGCCCGCCGCGCCAAGGACGCCTTCCTCACCAAGGGCAAGCCTCTGGTCCTCGAGAAGATCCGGGAGTACGTCGCCGCCATGGCGAAGGGCGGCCCGGCTAAGGACGAGCTGGATTCCAAGAAGACCCCCACCAAGGCCGCGGCGGTAGAGGCCGGTGGCGCGGCCACCGCGCCTGCCCCTGCGGCGGAGAAGAAGGAGGAGGCGCCGGCCGTGAAGGAGAAGAAGGCGAAGGCGAAGGACAAGGAAGGATTCAAGACGATCGAGATGACGGAGAAATTCTACTGCCGTGCGAAGGACATGTATGAGATCTTGATGGATGAGAACAGATGGAAGGGGTTCACGC AGAGCAATGCGAGG ATAAGCA GA GAGGTCGGAGGGCAGTTCAGCCTCTTCGATGGGTCAATCAGCGGCGTCAATGAGGAGTTGCAGGAAGGGAAGCTGATCGTGCAGAAGTGGCGGTTCGGTAGCTGGCCAGACGGCGTGCACTCGACGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACAGAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCT                                                                                                                    ]
[+] EMBL AU222635             [                                                                                                                         CGCACCAAGCCCCCCCACCAAACCCTAATCCTCCTTCCCCCCCCTCCCATGGCGAAGTACGGAGAGGGCGACGCGCGGTGGATCGTGCAGGAGCGCGCCGACGGCACCAACGTCCACAACTGGCACTGGGCGGAGCGCGACTGCCTCGAGTGGTCCCGCTCCCGCCTCACCTCCCTCCTCGCCGGCCTCCCCGTCCTCTCCGGCGAGGGCGGCCTCGCCCTCCGCACCACCGCGCTCGACAAGCTCGACGGCGAGGCCTACGTCAACATCCGCAAGGGGAAGGTCATCCCGGGGTACGAGCTCTCCCTCACCCTCGCCTGGGAGGCCGAGGCCACCACCGAGTCCGGCGTCGTCAAGGTCTCCGGCGCCGCCGAGGTGCCCTACCTCGCCGACGAGAACGCCGACGAGGACCCGGAGCTCCGCGTCACCGTCCGCGGCGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL D42553               [                                                                                                                                AGCCCCCCCACCAAACCCTAATCCTCCTTCCCCCCCCTCCCATGGCGAAGTACGGAGAGGGCGACG GCNGTGGATCGTGCAGGAGCGCGCCGAC GCACCAACGTCCACAACTGGCACTGGGCGGA  GCGACTGCCTCGAGTGGTCCCGCTCCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU093508             [                                                                                                                                                                                             CGACGCGCGGTGGATCGTGCAGGAGCGCGCCGACGGCACCAACGTCCACAACTGGCACTGGGCGGA CGCGACTGCCTCGAGTGGTCCCGCTCCCGCCTCACCTCCCTCCTCGCCGGCCTCCCCGTCCTCTCCGGCGAGGGCGGCCTCGCCCTCCGCACCACCGCGCTCGACAAGCTCGACGGCGAGGCCTACGTCAACATCCGCAA GGGAAGGTCATCCCGGGGTACGAGCTCTCCCTCACCCTCGCCTGGGAGGCCGAGGCCACCACCGAGTCCGGCGTCGTCAAGGTCTCCGGCGCCGCCGAGGTGCCCTACCTCGCCGACGAGAACGCCGACGAGGACCCGGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM419135             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGGTTTCACCCAAGACCAATGCGAGGNATAACCACGAGGAGTTCGGAGGCCAGTTCAGCCTCTTCGATGGGTCAATCAGCGGCGTCAATGAGGAGTTGCAGGAAGGGAAGCTGATCGTGCAGAAGTGGCGGTTCGGTAGCTGGCCAGANGGCGTGCACTCGACGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTC AACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGACACAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAGTAACCTTGTGTTGTGTTGGTTGACTCCTTGATTGTTCTGCAAAAAAAAAA]
[+] EMBL AU093507             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGAAGGGAAGCTGATCGTGCAGAAGTGGCGGTTCGGTAGCTGGCCAGACGGCGTGCACTCGACGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTT CTGTCGCAGTTTATTCGATGTTAGACAGAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAGTAAaaaaaaaaa                                      ]
[+] EMBL AA750702             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTG                                                                                                                                                                                      ]
[+] EMBL AU031000             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCGAGGCTGGNGNGAACTCATCTTCCAGNGGATACGCGGNGTGTTTGGTTTTGGGATCTAAAGCNGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACNGTTATCCCTGTCTTTG TGTCGCNGTTTATTCGATGTTAGACAGAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCAaaaaaa                                                                                                      ]


>consensus_13105#1 CTATTCCAGTCCACGACCGTCGGACCGAACCGAACCATCCAGAAGCAGCCGCCGCCCCAA TTCTAAAGCATCTCCCCCCCACCCATCTCCGATCTCCACCCGCAGATCCAACGGAGACAA GCGCACCAAGCCCCCCCACCAAACCCTAATCCTCCTTCCCCCCCCTCCCATGGCGAAGTA CGGAGAGGGCGACGCGCGGTGGATCGTGCAGGAGCGCGCCGACGGCACCAACGTCCACAA CTGGCACTGGGCGGAGCGCGACTGCCTCGAGTGGTCCCGCTCCCGCCTCACCTCCCTCCT CGCCGGCCTCCCCGTCCTCTCCGGCGAGGGCGGCCTCGCCCTCCGCACCACCGCGCTCGA CAAGCTCGACGGCGAGGCCTACGTCAACATCCGCAAGGGGAAGGTCATCCCGGGGTACGA GCTCTCCCTCACCCTCGCCTGGGAGGCCGAGGCCACCACCGAGTCCGGCGTCGTCAAGGT CTCCGGCGCCGCCGAGGTGCCCTACCTCGCCGACGAGAACGCCGACGAGGACCCGGAGCT CCGCGTCACCGTCCGCGGCGACGATGGCCCCGTCGCCCGCCGCGCCAAGGACGCCTTCCT CACCAAGGGCAAGCCTCTGGTCCTCGAGAAGATCCGGGAGTACGTCGCCGCCATGGCGAA GGGCGGCCCGGCTAAGGACGAGCTGGATTCCAAGAAGACCCCCACCAAGGCCGCGGCGGT AGAGGCCGGTGGCGCGGCCACCGCGCCTGCCCCTGCGGCGGAGAAGAAGGAGGAGGCGCC GGCCGTGAAGGAGAAGAAGGCGAAGGCGAAGGACAAGGAAGGATTCAAGACGATCGAGAT GACGGAGAAATTCTACTGCCGTGCGAAGGACATGTATGAGATCTTGATGGATGAGAACAG ATGGAAGGGGTTCACGCAGAGCAATGCGAGGATAAGCAGAGAGGTCGGAGGGCAGTTCAG CCTCTTCGATGGGTCAATCAGCGGCGTCAATGAGGAGTTGCAGGAAGGGAAGCTGATCGT GCAGAAGTGGCGGTTCGGTAGCTGGCCAGACGGCGTGCACTCGACGGTTAGGTTGGTATT TGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGA AGACAGATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCAT CTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGTACTTTGACTCTTGA GCTGGATTTCTGCTTTTCAGGAAGTCGAGCGTTACCATGTCACAGTTATCCCTGTCTTTG CTGTCGCAGTTTATTCGATGTTAGACAGAAACTTTGCATATTACGGGGAAGTCGGAAAAA ACATCTGTTATTCATCACGCTGGAATGCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAA CTGATGGTTGAGTAACCTTGTGTTGTGTTGGTTGACTCCTTGATTGTTCTGCAAAAAAAA AA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13105#0      CATTAAATGTTGAAAATGTAGCTATATTTTTCTGTAAGCTTATTCAGACTATAAGTTTGG 60
consensus_13105#1      ------------------------------------------------------------
                                                                                   

consensus_13105#0      CTTAGGATAAACCCAAAATGAGTTATAAAATGAAACGTAGGGAGTATTACTCTACTTGTT 120
consensus_13105#1      ------------------------------------------------------------
                                                                                   

consensus_13105#0      GTCGGACACAAGTTTTACCCGGATGCGGGTATTTTTTGCCCATGTAATCCTTGGGCGAAC 180
consensus_13105#1      ------------------------------------------------------------
                                                                                   

consensus_13105#0      TGAGATCTAGTTAGATTATAAATTCTAGCTAGGGGTGCCAATGGGCAAATCCGTGCAAAT 240
consensus_13105#1      ------------------------------------------------------------
                                                                                   

consensus_13105#0      TGACCTTGTGGGGGTGGCATGGTGGCAGCATGCACCACCTCTGCATTGGGAAAACGGCAG 300
consensus_13105#1      ------------------------------------------------------------
                                                                                   

consensus_13105#0      TGGGGCGCTGTTTTCATGGTCGGTGACTCTGCACCGGGAACATGGCACTATGCCACCGTC 360
consensus_13105#1      ------------------------------------------------------------
                                                                                   

consensus_13105#0      TTCTTGGGTGGCTCCATTTTCACTTGCCACTTGTCGATGGACGGCGTTGGAGC-TGGAGC 419
consensus_13105#1      -------------CTATTCCAGTCCACGAC----CGTCGGACCGAACCGAACCATCCAGA 43
                                    * ***        * **    **  **** *    * * * *  ** 

consensus_13105#0      TGCTCCTGTCGGTGGTGTCTGTGAATGCCGCCTCTCTCTGCGCCTCCC-TCTCC-TCCGC 477
consensus_13105#1      AGCAGCCGCCGCCCCAATTCTAAAGCATCTCCCCCCCACCCATCTCCGATCTCCACCCGC 103
                        **  * * **      *     *    * ** * *    *  ****  *****  ****

consensus_13105#0      GCTCATAGCGGCGAGGTGTCCTTCAAGCTCTCACTGCATGACCTCTCCGTCTTGCCTAAC 537
consensus_13105#1      AGATCCAACGGAGACAAGCGCACCAAGCCCCCCCACCAAACCCTAATCCTCCTTCC---C 160
                             * *** **   *  *  ***** * * *  **   ***   * ** * **   *

consensus_13105#0      TGCCTGAGCAAGGAGTAGATCCGTAGCAGCAACTCGCTGCTTTCACTGCACCAGCGGTGT 597
consensus_13105#1      CCCCCTCCCATGGCGAAGTACGGAGAGGGCGACGCGCGGTGGATCGTGCAGGAGCG-CGC 219
                         **    ** ** * **  * *     ** ** *** *       ****  ****  * 

consensus_13105#0      TGCCCAAGGTGAAGGCAGGGCAGGAATCAAGGGGCAGCAGCTTGA-TGCTTCTTGCCATC 656
consensus_13105#1      CGACGGCACCAACGTCCA--CAACTGGCACTGGGCGG-AGCGCGACTGCCTCGAGTGGTC 276
                        * *       * * *    **     **  **** * ***  ** *** **  *   **

consensus_13105#0      TTGCTGCTTGTGCACGGATCCAAGATGAAGCAGTTGATCGCTGCTTGACATACCCAGTGT 716
consensus_13105#1      CCGCTCCCGCCTCACCTCCCTCC-------TCGCCGGC--CTCCCCGTCCTCTCCGGCGA 327
                         *** *     ***    *            *  *    ** *  * * *  ** * * 

consensus_13105#0      GGCTGCGGTGGCGCCTCCTGCAGCTGCCTGGATGCAGTGCGTGGAAGAGGAACCAATGGT 776
consensus_13105#1      GG--GCGGCCTCGCCCTCCGCACCACCGCGCTCGACAAGCTCGACGGCGAGGCCTACG-- 383
                       **  ****   ****  * *** *  *  *   *    **  *   * *   ** * *  

consensus_13105#0      CCTACCATGGTCAAGGAAATGGATTGGGTTCGTTCATTTAAAACCAAGGAAACTCCTGCC 836
consensus_13105#1      -TCAACATCCGCAAGGGGAAGG-----------TCATCCCGGGGTACGAGCTCTCCC--- 428
                          * ***   *****  * **           ****        * *    ****    

consensus_13105#0      CAAAACCAATCCAACCCAAACCTTCTCACTTACATACCCAAACCAGTCCACTCCAATTAT 896
consensus_13105#1      -----TCACCCTCGCCTGGGAGGCCGAGGCCAC-CACCGAGTCCGGC--------GTCGT 474
                             **  *   **        *      **  *** *  ** *          *  *

consensus_13105#0      CAAACATTTGAACCCACCCAAAACAAATACATTCTTAGGGCCTGTTCTAAAGTGTGGTTT 956
consensus_13105#1      CAAGGTCTCCGGCGCCGCCGAGGTGC---CCTACCTCG---CCGACGAGAACGCCGACGA 528
                       ***    *    * *  ** *        * * * * *   * *     **    *    

consensus_13105#0      GAAATGGATGATTAGCTGCACACAAAACGAGAAACATGATTAACATGATTAAAAACTTGA 1016
consensus_13105#1      GGACCCGGAGCTCCGCGTCACCGTCCGCGGCGACGATGGCCC-CGTCGCCCGCCGCGCCA 587
                       * *   *  * *  **  ***      **   *  ***     * *         *   *

consensus_13105#0      AAAATGATTTTTTTTTTTATTTTTAAAGCAACTTATATATTGAAAGTTTTCGTGCAAAAC 1076
consensus_13105#1      AGGACGCCTTCCTCACCAAGGGC--AAGCCTCTGGT-CCTCGAGAAGATCCGGG---AGT 641
                       *  * *  **  *     *      ****  **  *   * ** *   * ** *   *  

consensus_13105#0      ACACCGTTTAACAGGTTAAAAAGCGTGCTAACCAAAAATTGAAGAAGCAAGTTGAAGCGT 1136
consensus_13105#1      ACGTCGCC-GCCATGGCGAAGGGCGGCCCGGCTAAGGA---------CGAGCTGGATTCC 691
                       **  **     ** *   **  ***  *   * **  *         * ** ** *    

consensus_13105#0      AGTTTAGGACGCGCTCTTAAATCTGACCCCTTCCACCCATCTCAGTCCAATTCATTATCA 1196
consensus_13105#1      A----AGAAGACCCCCACCAA---GGCCGCGGCGGTAGAGGCCGGTG-GCGCGGCCACCG 743
                       *    ** *  * * *   **   * ** *  *     *   * **          * * 

consensus_13105#0      CCCCTAGTTCTAGCTAGCAGAATGTCTTCACAGTACAATGAGTTTTTTGTGTTTTGCAAA 1256
consensus_13105#1      CGCCTGCCCCTG--CGGCGGAGA--------AGAAGGAGGAGGCGCCGGC----CGTGAA 789
                       * ***    **     ** **          ** *  * ***      *      *  **

consensus_13105#0      CAATCTCTTGACCAAATAAGATCCTGGCTTTTAATTTTGACATGTTTTTGGAGGCCCAAG 1316
consensus_13105#1      GGA----------GAAGAAGGCGAAGGCGAAGGACAAGGAAGGATTCAAGACGATCGAGA 839
                         *           ** ***     ***     *    **    **   *  *  * *  

consensus_13105#0      TCATGTGCATATTTATTTCCTTGCTATAGTAACTCTGGTGATTAATCAGACCAGTGTCAT 1376
consensus_13105#1      TGACGGAGAAATTC----TACTGCCGTGCGAA----GGACATGTATGAGA---------- 881
                       * * *   * ***        ***  *   **    **  **  ** ***          

consensus_13105#0      TCCTGGCAGCCTAATGTGATTAGCTATGTGGTATTTGCATCTTGTTAATTTTCTGCTTCC 1436
consensus_13105#1      TCTTGATGG----ATGAGAACAGATGGAAGGGGTTCACGCAGAGCAATGCGAGGATAAGC 937
                       ** **   *    *** **  ** *    **  **  *     *  *            *

consensus_13105#0      AGTGAGTTTCTGTAGTAAGTTA-CTTGAGAGATAGATATACTCATCTAGCCATGTGAAGT 1495
consensus_13105#1      AGAGAGGTCGGAGGGCAGTTCAGCCTCTTCGATGGGT-----CAATCAGCGGCGTCAA-T 991
                       ** *** *      * *  * * * *    *** * *     **   ***   ** ** *

consensus_13105#0      CAACGTCTGTAATTTGTAGGTACTGCTTATATATAAATGTTGAATAAGGTCTTCAAAAAT 1555
consensus_13105#1      GAGGAGTTGCAGGAAG-GGAAGCTGATCGTGCAGAAGTGGCGGTTC-GGTAGCTGGCCAG 1049
                        *     ** *    *  *   *** *  *  * ** **  *  *  ***        * 

consensus_13105#0      GCGAAAATCGAACTGTGCAGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAG 1615
consensus_13105#1      ACGGCG--TGCACT-CGACGGTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAG 1106
                        **      * ***  *  *****************************************

consensus_13105#0      TCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGG 1675
consensus_13105#1      TCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGATATGGAAATTCAACTGTGG 1166
                       ************************************************************

consensus_13105#0      TGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTG 1735
consensus_13105#1      TGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTG 1226
                       ************************************************************

consensus_13105#0      GTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTC 1795
consensus_13105#1      GTTTTGGGATCTAAAGCAGTACTTTGACTCTTGAGCTGGATTTCTGCTTTTCAGGAAGTC 1286
                       ************************************************************

consensus_13105#0      GAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGAC 1855
consensus_13105#1      GAGCGTTACCATGTCACAGTTATCCCTGTCTTTGCTGTCGCAGTTTATTCGATGTTAGAC 1346
                       ************************************************************

consensus_13105#0      ACAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAAT 1915
consensus_13105#1      AGAAACTTTGCATATTACGGGGAAGTCGGAAAAAACATCTGTTATTCATCACGCTGGAAT 1406
                       * **********************************************************

consensus_13105#0      GCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAAAAAAAAAAAAAAAA 1975
consensus_13105#1      GCGTCTGCAATGTTTGCCAAGTGTTAATCTGCAACTGATGGTTGAGTAACCTTGTGTTGT 1466
                       *********************************************  **           

consensus_13105#0      AAA--------------------------------- 1978
consensus_13105#1      GTTGGTTGACTCCTTGATTGTTCTGCAAAAAAAAAA 1502
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)