These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [GCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGANNANNCCAAGNNNNCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGNNNNCGTTAGNCNNNTGCNNCTTATCAGCTTCATCGCNNACNNNNCCCCGGGCTGCGNNNNNNNNNNNNGCAACT] [+] EMBL CF195967 [GCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGAGCTCGANNANNCCAAGNNNNCGTACCCTGATGCATTCGTCCGTATCATCGGCTTCGNNNNCGTTAGNCNNNTGCNNCTTATCAGCTTCATCGCNNACNNNNCCCCGGGCTGCGNNNNNNNNNNNNGCAACT] consensusID : consensus_1311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGNNNTNNNNNNNNNNAAGANNGCGTACCCTGATGCATTCGTCCGTATCATCGGCNTNNNNNNNNNNAGGCAGGT] [+] EMBL CF197007 [AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGACGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGTGCTCAAGGNNNTNNNNNNNNNNAAGANNGCGTACCCTGATGCATTCGTCCGTATCATCGGCNTNNNNNNNNNNAGGCAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1311#0 ----------------GCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTC 44 consensus_1311#1 AGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTC 60 ******************************************** consensus_1311#0 GGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCG 104 consensus_1311#1 GGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCG 120 ************************************************************ consensus_1311#0 CCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCA 164 consensus_1311#1 CCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCA 180 ************************************************************ consensus_1311#0 GGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCAC 224 consensus_1311#1 GGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCAC 240 ************************************************************ consensus_1311#0 CGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCT 284 consensus_1311#1 CGTGGAGGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCT 300 ************************************************************ consensus_1311#0 CGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGA 344 consensus_1311#1 CGAGTTCAGCAAGGTCGGATTTGTCTACCGTGAGAACCACAGGTCCCCTGGATACTACGA 360 ************************************************************ consensus_1311#0 CGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGT 404 consensus_1311#1 CGGCAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCCACCCAGGT 420 ************************************************************ consensus_1311#0 GCTCAAGGAGCTCGANNANNCCAAGNNNNCGTACCCTGATGCATTCGTCCGTATCATCGG 464 consensus_1311#1 GCTCAAGGNNNTNNNNNNNNNNAAGANNGCGTACCCTGATGCATTCGTCCGTATCATCGG 480 ******** * ** ** *** ** ******************************* consensus_1311#0 CTTCGNNNNCGTTAGNCNNNTGCNNCTTATCAGCTTCATCGCNNACNNNNCCCCGGGCTG 524 consensus_1311#1 CNTNNNNNNNNNNAGGCAGGT--------------------------------------- 501 * * **** ** * * consensus_1311#0 CGNNNNNNNNNNNNGCAACT 544 consensus_1311#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||