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Oryza sativa
cluster # 13119 cluster # 13119       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13119#0 length = 1520 sequences # 8  
consensus_13119#1 length = 706 sequences # 3  
consensus_13119#2 length = 236 sequences # 1  

consensusID : consensus_13119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1520
fasta sequence
                              [CGTCGTTTTGGCTCGTCTCCTCCCCCGCGACTATAAAAACGGGAGCTTTGCTGCTGCGCCGGCCGCCCCACCACCTCCGGTCCATCTCGGCCGCCGCCGCTGTCGCTGTCGCGATCGCGATCCCCGCCTAGATAGACTTCCCCAAGAACCCGCCGCCGCCGCTGCAGGGGTGGCGTGGCATCGCGGGAGACCAGCTCGAGCCTTCAGCCTCTTTTGCGCCGCCGCCGCCGCCGCCGGTCGATCCGTGTTCTTGGCTCAGGCGGCGTCAATGGCGGCGGCGAATGGGAGCGCCTGCGGCGGAG-GCGG-CG-TGGACAAGGAGAAGGAGGAGTTCAAGCAGATCTAC-GGGGTGCTCAAGGAGGAGCTGCT-CAGGGACCCCGCCTTCGAGTTCACCGACTCGTCGCGGCAGTGGATCGATCGCATGTTGGACTACAATGTACCTGGAGGGAAGTGCAATCGTGGTCTCTCTGTGGTCGATAGCTATAAGCTGTTGAAGGGCACCAATGTTCTAAGTCAGGAAGACATG-TTTCTCGCGAGCACTCTTGGTTGGTGCGTTGAATGGCTTCAAGCTTACTTTCTCGTGCTTGATGATATCATGGATGATTCTCACACTCGACGTG-GTCAGCCTTGTTGGTTTCGGGTGCCTCAGGTTGGCTCCATTGCTATCAATGATGGAATTATCCTTCGCAACCATATCACGCGAATGCTTCGGCTCCACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCCGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGA-AGATTACAAATGCTCTTGGCTAGTTGTGCAAGCCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTTCTATTTGAAAATTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTACAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTGCAAGGTGTTATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGTTTG-TCTTGTTATTAGCAAAAA]

[+] EMBL AK073822             [CGTCGTTTTGGCTCGTCTCCTCCCCCGCGACTATAAAAACGGGAGCTTTGCTGCTGCGCCGGCCGCCCCACCACCTCCGGTCCATCTCGGCCGCCGCCGCTGTCGCTGTCGCGATCGCAATCCCCGCCTAGATAGACTTCCCCAAGAACCCGCCGCCGCCGCTGCAGGGGTGGCGTGGCATCGCGGGAGACCAGCTCGAGCCTTCAGCCTCTTTTGCGCCGCCGCCGCCGCCGCCGGTCGATCCGTGTTCTTGGCTCAGGCGGCGTCAATGGCGGCGGCGAATGGGAGCGCCTGCGGCGGAG GCGG CG TGGACAAGGAGAAGGAGGAGTTCAAGCAGATCTAC GGGGTGCTCAAGGAGGAGCTGCT CAGGGACCCCGCCTTCGAGTTCACCGACTCGTCGCGGCAGTGGATCGATCGCATGTTGGACTACAATGTACCTGGAGGGAAGTGCAATCGTGGTCTCTCTGTGGTCGATAGCTATAAGCTGTTGAAGGGCACCAATGTTCTAAGTCAGGAAGACATG TTTCTCGCGAGCACTCTTGGTTGGTGCGTTGAATGGCTTCAAGCTTACTTTCTCGTGCTTGATGATATCATGGATGATTCTCACACTCGACGTG GTCAGCCTTGTTGGTTTCGGGTGCCTCAGGTTGGCTCCATTGCTATCAATGATGGAATTATCCTTCGCAACCATATCACGCGAATGCTTCGGCTCCACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCCGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGA AGATTACAAATGCTCTTGGCTAGTTGTGCAAGCCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTTCTATTTGAAAATTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTACAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTT                                                                                        ]
[+] EMBL OSC301               [                                              TTTGCTGCTGCGCCGGCCGCCCCACCACCTCCGGTCCATCTCGGCCGCCGCC CTGTCGCTGTCGC ATCG GATCCCCGCCTAGATAGACTTCCCCAAGAACCCGCCGCCGCCGCTGCAGGGGTGGCGTGGCATCGCGGGAGACCAGCTCGAGCCTTCAGCCTCTTTTGCGCCGCCGCCGCCGCCGCCGGTCGATCCGTGTTCTTGGCTCAGGCGGCGTCAATGGCGGCGGCGAATGGGAGCGCCTGC GCGAAGNGCGGCCGTTTGACAAGGAGAAGGAGGAGTTCAAGCAGATCTACGGGGGTGCTCAAGGAGGAGCTTCTNAAGGGACCCCGCCTTCGAGTTn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK100273             [                                                                        ACCTCCGGTCCATCTCGGCCGCCGCCGCTGTCGCTGTCGCGATCGCGATCCCCGCCTAGATAGACTTCCCCAAGAACCCGCCGCCGCCGCTGCAGGGGTGGCGTGGCATCGCGGGAGACCAGCTCGAGCCTTCAGCCTCTTTTGCGCCGCCGCCGCCGCCGCCGGTCGATCCGTGTTCTTGGCTCAGGCGGCGTCAATGGCGGCGGCGAATGGGAGCGCCTGCGGCGGAG GCGG CG TGGACAAGGAGAAGGAGGAGTTCAAGCAGATCTAC GGGGTGCTCAAGGAGGAGCTGCT CAGGGACCCCGCCTTCGAGTTCACCGACTCGTCGCGGCAGTGGATCGATCGCATGTTGGACTACAATGTACCTGGAGGGAAGTGCAATCGTGGTCTCTCTGTGGTCGATAGCTATAAGCTGTTGAAGGGCACCAATGTTCTAAGTCAGGAAGACATG TTTCTCGCGAGCACTCTTGGTTGGTGCGTTGAATGGCTTCAAGCTTACTTTCTCGTGCTTGATGATATCATGGATGATTCTCACACTCGACGTG GTCAGCCTTGTTGGTTTCGGGTGCCTCAGGTTGGCTCCATTGCTATCAATGATGGGATTATCCTTCGCAACCATATCACGCGAATGCTTCGGCTCCACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCCGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGA AGATTACAAATGCTCTTGGCTAGTTGTGCAAGCCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTTCTATTTGAAAATTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTACAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTGCAAGGTGTTATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGTTTG TCT               ]
[+] EMBL CA753426             [                                                                                    TCTCGGCCGCCGCCGCTGTCGCTGTCGCGATCGCGATCCCCGCCTAGATAGACTTCCCCAAGAACCCGCCGCCGCCGCTGCAGGGGTGGCGTGGCATCGCGGGAGACCAGCTCGAGCCTTCAGCCTCTTTTGCGCCGCCGCCGCCGCCGCCGGTCGATCCGTGTTCTTGGCTCAGGCGGCGTCAATGGCGGCGGCGAATGGGAGCGCCTGCGGCGGAG GCGG CG TGGACAAGGAGAAGGAGGAGTTCAAGCAGATCTAC GGGGTGCTCAAGGAGGAGCTGCT CAGGGACCCCGCCTTCGAGTTCACCGACTCGTCGCGGCAGTGGATCCATCGCATGTTGGACTACAATGTACCTGGAGGGAAGTGCAATCGTGGTCTCCCTGTGGTCGATAGCTATTAGCTGTTGAAGGGCACC ATGTTCTTAGTCAGGAAAACCTGTTTTCTCCCGAACACCCTGGGGTGGTGCGTTGAATGGCCTCAAGCTAACTTCCTCGTGCTTGATTATATCCTGGATTATTCTCCCCCTCCACCTGTGTCCGCCct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BP184754             [                                                                                                                                                                                                                       GCGCCGCCGCCGCCGCCGCCGGTCGATCCGTGTTCTTGGCTCAGGCGGCGTCAATGGCGGCGGCGAATGGGAGCGCCTGCGGCGGAG GCGG CG TGGACAAGGAGAAGGAGGAGTTCAAGCAGATCTAC GGGGTGCTCAAGGAGGAGCTGCT CAGGGACCCCGCCTTCGAGTTCACCGACTCGTCGCGGCAGTGGATCGATCGCATGTTGGACTACAATGTACCTGGAGGGAAGTGCAATCGTGGTCTCTCTGTGGTCGATAGCTATAAGCTGTTGAAGGGCACCAATGTTCTAAGTCAGGAAGACATG TTTCTCGCGAGCACTCTTGGTTGGTGCGTTGAATGGCTTCAAGCTTACTTTCTCGTGCTTGATGATATCATGGATGATTCTCACACTCGACGTG GTCAGCCTTGTTGGTTTCGGGTGCCTCAGGTTGGCTCCATTGCTATCAATGATGGAATTATCCTTCGCAACCATATCACGCGAATGCTTCGGCTCCACTTTAGAGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGGTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA999743             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTCTCTCTGTGGTCGATAGCTATAATCTGCTGAATGGCACCAATGTTCTAAATCAGGAAGACATG TTTCTCGCGAGCACTCTTGGCTGGCGCGGTGAATGGCTTCAAGCTTACTTTCTCGTGCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU094399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACATTGACAGATTACAAATGCTCTTGGCTAGTTGTGCAAGCCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTTCTATTTGAAAATTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGANCCTCTACNGAGAACTAAACCTAGAGGCGGTCTTTCTGGACTATGAGANCGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTACAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTNTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTGCAAGGTGTTATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGTTTG TCTTGTTATTAGCAAAAA]
[+] EMBL AU197555             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAATTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGAGCCTNTACAGAGAACTAAACCTAGAGGCGGTCTTTNTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTNTGAAGTCCTTCTTGCACAAGATCTACAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTGCAAGGTGTTATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGTTTGTTCTTGTTAaaaa      ]


>consensus_13119#0 CGTCGTTTTGGCTCGTCTCCTCCCCCGCGACTATAAAAACGGGAGCTTTGCTGCTGCGCC GGCCGCCCCACCACCTCCGGTCCATCTCGGCCGCCGCCGCTGTCGCTGTCGCGATCGCGA TCCCCGCCTAGATAGACTTCCCCAAGAACCCGCCGCCGCCGCTGCAGGGGTGGCGTGGCA TCGCGGGAGACCAGCTCGAGCCTTCAGCCTCTTTTGCGCCGCCGCCGCCGCCGCCGGTCG ATCCGTGTTCTTGGCTCAGGCGGCGTCAATGGCGGCGGCGAATGGGAGCGCCTGCGGCGG AGGCGGCGTGGACAAGGAGAAGGAGGAGTTCAAGCAGATCTACGGGGTGCTCAAGGAGGA GCTGCTCAGGGACCCCGCCTTCGAGTTCACCGACTCGTCGCGGCAGTGGATCGATCGCAT GTTGGACTACAATGTACCTGGAGGGAAGTGCAATCGTGGTCTCTCTGTGGTCGATAGCTA TAAGCTGTTGAAGGGCACCAATGTTCTAAGTCAGGAAGACATGTTTCTCGCGAGCACTCT TGGTTGGTGCGTTGAATGGCTTCAAGCTTACTTTCTCGTGCTTGATGATATCATGGATGA TTCTCACACTCGACGTGGTCAGCCTTGTTGGTTTCGGGTGCCTCAGGTTGGCTCCATTGC TATCAATGATGGAATTATCCTTCGCAACCATATCACGCGAATGCTTCGGCTCCACTTTAG AGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGGTCGAGTTCAAGACAGC TTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATA TAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCT GCCGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGA AGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTA TGGTGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGAAGATTACAAATGCTCTTG GCTAGTTGTGCAAGCCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTTCTATTTGAAAA TTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAA CCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATAT AGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTA CAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTT CTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTGCAAGGT GTTATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGTT TGTCTTGTTATTAGCAAAAA



consensusID : consensus_13119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 706
fasta sequence
                              [AGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCCGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGAAGATTACAAATGCTCTTGGCTAGTTGTGCAAG-CCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTT-CTATTTGAAAATTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTG-AAGAGCCTCTACAGAGAACTAAACCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTACAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGT]

[+] EMBL AB021979             [AGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCCGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGAAGATTACAAATGCTCTTGGCTAGTTGTGCAAG CCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTT CTATTTGAAAATTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTG AAGAGCCTCTACAGAGAACTAAACCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTACAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGT]
[+] EMBL C27703               [AGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGANATCCTACTATTCATTTAATCTGCNGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTNCANGTCCAAGACGATTATCTAGATTNTAATGGTGACCCCAAATTTATTGGCAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL D42743               [                                                                                                                                                                                                                                                                                                        gcCTAGTTGTGCAAGCCCCTTGACCGTGCTGATGAGAGTCAAAAGACCGTTCCTATTTGAAAATTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAAGAGCCTCTACAGAGAACTAAACCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTACAAGAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCT                                                                      ]


>consensus_13119#1 AGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAA CATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCC GGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGA CATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTATGG TGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGAAGATTACAAATGCTCTTGGCT AGTTGTGCAAGCCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTTCTATTTGAAAATTA TGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAACCT AGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATATAGA AGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTACAA GAGACAGAAGTAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCTTCTC TAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTATTTCGGGTG TGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGT



consensusID : consensus_13119#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence
                              [CCAGAGGCCGAGCCAAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTTTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGGTAATAATGTTGCAAGGTGTTATTTGGGGTGTGATGGACCGCTTGGTGTAGCCCTTAGCCAATAATCCCTGAGTTGTTTGTCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA]

[-] EMBL CA760780             [CCAGAGGCCGAGCCAAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTTTTCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGGTAATAATGTTGCAAGGTGTTATTTGGGGTGTGATGGACCGCTTGGTGTAGCCCTTAGCCAATAATCCCTGAGTTGTTTGTCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA]


>consensus_13119#2 CCAGAGGCCGAGCCAAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTTT TCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGGTAATAATGTTGCAAGG TGTTATTTGGGGTGTGATGGACCGCTTGGTGTAGCCCTTAGCCAATAATCCCTGAGTTGT TTGTCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13119#0      CGTCGTTTTGGCTCGTCTCCTCCCCCGCGACTATAAAAACGGGAGCTTTGCTGCTGCGCC 60
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      GGCCGCCCCACCACCTCCGGTCCATCTCGGCCGCCGCCGCTGTCGCTGTCGCGATCGCGA 120
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TCCCCGCCTAGATAGACTTCCCCAAGAACCCGCCGCCGCCGCTGCAGGGGTGGCGTGGCA 180
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TCGCGGGAGACCAGCTCGAGCCTTCAGCCTCTTTTGCGCCGCCGCCGCCGCCGCCGGTCG 240
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      ATCCGTGTTCTTGGCTCAGGCGGCGTCAATGGCGGCGGCGAATGGGAGCGCCTGCGGCGG 300
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      AGGCGGCGTGGACAAGGAGAAGGAGGAGTTCAAGCAGATCTACGGGGTGCTCAAGGAGGA 360
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      GCTGCTCAGGGACCCCGCCTTCGAGTTCACCGACTCGTCGCGGCAGTGGATCGATCGCAT 420
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      GTTGGACTACAATGTACCTGGAGGGAAGTGCAATCGTGGTCTCTCTGTGGTCGATAGCTA 480
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TAAGCTGTTGAAGGGCACCAATGTTCTAAGTCAGGAAGACATGTTTCTCGCGAGCACTCT 540
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TGGTTGGTGCGTTGAATGGCTTCAAGCTTACTTTCTCGTGCTTGATGATATCATGGATGA 600
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TTCTCACACTCGACGTGGTCAGCCTTGTTGGTTTCGGGTGCCTCAGGTTGGCTCCATTGC 660
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TATCAATGATGGAATTATCCTTCGCAACCATATCACGCGAATGCTTCGGCTCCACTTTAG 720
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      AGGAAAACTTTACTATGCTGATCTCCTTGATTTATTCAATGAGGTCGAGTTCAAGACAGC 780
consensus_13119#1      ------------------------------------------------------------
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATA 840
consensus_13119#1      ---AGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATA 57
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCT 900
consensus_13119#1      TAACATAGGAGTTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCT 117
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      GCCGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGA 960
consensus_13119#1      GCCGGTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGA 177
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      AGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTA 1020
consensus_13119#1      AGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAGACGATTATCTAGATTGTTA 237
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TGGTGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGAAGATTACAAATGCTCTTG 1080
consensus_13119#1      TGGTGACCCCAAATTTATTGGCAAGATCGGGACTGACATTGAAGATTACAAATGCTCTTG 297
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      GCTAGTTGTGCAAGCCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTTCTATTTGAAAA 1140
consensus_13119#1      GCTAGTTGTGCAAGCCCTTGAGCGTGCTGATGAGAGTCAAAAGAGCGTTCTATTTGAAAA 357
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      TTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAA 1200
consensus_13119#1      TTATGGAAAGAAAGATCCAGCCTGTGTGGCAAAAGTGAAGAGCCTCTACAGAGAACTAAA 417
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      CCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATAT 1260
consensus_13119#1      CCTAGAGGCGGTCTTTCTGGACTATGAGAACGAGAGTTACAAGAAGTTGATTGCGGATAT 477
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      AGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTA 1320
consensus_13119#1      AGAAGCCCAGCCAAGCATAGCTGTTCAGAATGTTCTGAAGTCCTTCTTGCACAAGATCTA 537
consensus_13119#2      ------------------------------------------------------------
                                                                                   

consensus_13119#0      CAAGAGACAGAAGTA-GGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCT 1379
consensus_13119#1      CAAGAGACAGAAGTA-GGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTCT 596
consensus_13119#2      CCAGAGGCCGAGCCAAGGGGGGGTTTCTGTGCAGGAAGCTGTCCATTGTTGCATGTTTTT 60
                       * **** * **   * ****************************************** *

consensus_13119#0      TCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTTGCAAGG 1439
consensus_13119#1      TCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGATAATAATGTT------ 650
consensus_13119#2      TCTCTAGCAACTGATGTTGTATGTTGCAATTTGCTGATCTTGGGTAATAATGTTGCAAGG 120
                       ******************************************* **********      

consensus_13119#0      TGTTATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGT 1499
consensus_13119#1      ----ATTTCGGGTGTGATGGACCGCTTGGTGTAGACATTAGACAATAATACATGAGCTGT 706
consensus_13119#2      TGTTATTTGGGGTGTGATGGACCGCTTGGTGTAGCCCTTAGCCAATAATCCCTGAGTTGT 180
                           **** ************************* * **** ******* * **** ***

consensus_13119#0      TTGTCTTGTTATTAGCAAAAA----------------------------------- 1520
consensus_13119#1      --------------------------------------------------------
consensus_13119#2      TTGTCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA 236
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)