These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1517 fasta sequence [ATCCCCGATCCGTTCTCTCCCTCTTTCCTCCTTCCTCACCGTCGCTGCCGTCCTCCCCGGCACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGCGTTGCCTCCTCGCCCCCTCCGCAGCCAGATTGACACCGCGCCGTTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCGCTGCCGATCCCGAGTCGAGACGACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCGACTCGCCGACGATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCT-CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCA-AGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATTTATTTAAACATTCTTTGTTGGTGTCGGTGCATTGCCTCTGAATTTTAGATCTTTTTTAGTGCAAAATGCATATGAATGTGTGGCATTGATATTCCCTTGGAGATGAAACAAGGTATTCAGTGTTTGCAAATTAACATTTACGAGTAGGATTTACCTAGCTAGCATGGCCTCTTTCATAGCCACTTTTGCATGTATGAATCTTTGTAAATTGTGGTCCTATAGGCAAATAGAAAGGTAAAA] [+] EMBL AK101468 [ATCCCCGATCCGTTCTCTCCCTCTTTCCTCCTTCCTCACCGTCGCTGCCGTCCTCCCCGGCACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGCGTTGCCTCCTCGCCCCCTCCGCAGCCAGATTGACACCGCGCCGTTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCGCTGCCGATCCCGAGTCGAGACGACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCGACTCGCCGACGATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCT CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCA AGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATTTATTTAAACATTCTTTGTTGGTGTCGGTGCATTGCCTCTGAATTTTAGATCTTTTTTAGTGCAAAATGCATATGAATGTGTGGCATTGATATTCCCTTGGAGATGAAACAAGGTATTCAGTGTTTGCAAATTAACATTTACGAGTAGGATTTACCTAGCTAGCATGGCCTCTTTCATAGCCACTTTTGCATGTATGAATCTTTGTAAATTGTGGTCCTATAGGCAAATAGAAAGGTAAAA] [+] EMBL CA754017 [ CCCCCTTTCCTCCTTCCCCACCGTCGCTGCCGTCCTCCCCGGCACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGTGTCGCCTCCTCGCCCCCTCCGCAGCTAGATTGACACTGCGCCATTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCACTGCCGATCCCGAGTCGAGACGACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTCCCTCACCCGCGACTCGCCGAC ATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCT CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCAGCAGTAACAACATCATAACATATCGTGGTTCATACAATGGAT ] [+] EMBL CB672133 [ GTCCTCCCCGGCACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGTGTCGCCTCCTCGCCCCCTCCGCAGCTAGATTGACACTGCGCCATTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCACTGCCGATCCCGAGTCGAGACGACGTCGGCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCGCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTCCCTCACCCGCGACTCGCCGAC ATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCTCCCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCAGCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTC ] [+] EMBL CB666327 [ TCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCGCCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGCGTTGCCTCCTCGCCCCCTCCGCAGCCAGATTGACACCGCGCCGTTCAATCCACCGCCTCAAGCACCATGCATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCGCTGCCGATCCCGAGTCGAGACGACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTATCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCGACTCGCCGACGATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCT CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCA ] [+] EMBL CB681325 [ TATCGCCCTCCCCATCTGTTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCTCTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCGACTCGCCGACGATGGTGCTCCACAAACCATTCAAGCCGTCACTGGTCT CCGGAGCGCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCATTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAAGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGATGCAAGCTGCAATGATCTGATATTTGGTATGTTTTAGAGCAAGATCTGCCTTATATATAATGCTATAATTATGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCA AGGAACCTTTTCAGGTCTTTCTGTCACGTTAATTGACAGATCGAGATGCACTTACACATATCTTGTTTTACGAAA ] [+] EMBL CB663377 [ GCCCGAGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCA AGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATTTATTTAAACATTCTTTGTTGGTGTCGGTGCATTGCCTCTGAATTTTAGATCTTTTTTAGTGC ] [+] EMBL BI811864 [ ACTCCTAGACTGCTATTTATTTTTACGTTACAGGGATTT GCTACAGATA TTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGACCAA ATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCACAGTAACCTTTTCAGTTCTTTATGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGC AAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATGGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCC ATGTATGTGAATGTGATCCTTATGCTGC AAGGTGCTACTATAAACACTTCGTT TTTTATCTATTTATTTAAACAaaaaaaaaa ] consensusID : consensus_13126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence [TGCGCCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGATATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTATGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATGGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTTAACCATCTCAATAAAGCTGATGAAGACAAGGTGCTCGATATTCAGACGATATTGGTCAAGTATAACATATTTCATATTGACCAGTGAGAAGCATCCAGAAGAAGTAAACGAATGAGCATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCACCCTCATGTTTTATGTATAGTTTTTATTATTTTGTGAAAGGATGGTAGTGTCAATATGTAGAGGTTTTATTAATTTGTGAAAGGATGGTAGTGTCAATAAAAAGA] [-] EMBL CB672134 [TGCGCCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGATATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTATGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATGGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTTAACCATCTCAATAAAGCTGATGAAGACAAGGTGCTCGATATTCAGACGATATTGGTCAAGTATAACATATTTCATATTGACCAGTGAGAAGCATCCAGAAGAAGTAAACGAATGAGCATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCACCCTCATGTTTTATGTATAGTTTTTATTATTTTGTGAAAGGATGGTAGTGTCAATATGTAGAGGTTTTATTAATTTGTGAAAGGATGGTAGTGTCAATAAAAAGA] consensusID : consensus_13126#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence [TGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTAAGGATTTAAACATTCTTTGTTGGTGTCGGTGCAAACAAAAAAAGA] [-] EMBL CB681326 [TGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTAAGGATTTAAACATTCTTTGTTGGTGTCGGTGCAAACAAAAAAAGA] [-] EMBL CB681382 [ AATCTTGCTTTGCTGCATCAGTAACAACATCATAACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATTGATTTAAACATTCTTTGTTGGTGTCGGTGCAAAAAAAAAAAGA] consensusID : consensus_13126#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 770 fasta sequence [CCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTGATGAAGACAAGGTGCTCGATATTCAGACGATATTGGTCAAGTATAACATATTTCATATTGACCAGTGAGAAGCATCCGGAAGAAGTAAACGAATGAGCATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCAACCTGCATGTTTTATGTATAGTTTTTA] [-] EMBL CB666328 [CCCTGAACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCCGCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGCTCACTTACGATGACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAGTTTTACGTTACAGGGATTTGGCTACAGATAGTTGCAAGCTGCAATGTTCTGATATTTGTTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTTGCTTATGTTCTTTAAAAATTCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAATGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTGATGAAGACAAGGTGCTCGATATTCAGACGATATTGGTCAAGTATAACATATTTCATATTGACCAGTGAGAAGCATCCGGAAGAAGTAAACGAATGAGCATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCAACCTGCATGTTTTATGTATAGTTTTTA] consensusID : consensus_13126#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [AATACTTGTAGTTTTGAATTTGATAATCTGATCGAAAAAATAGTTAACCCCAAAATCCTTTCCCAAAACCATGAGCTAAACGATTACTCTTGCTAACTCCAACTATACAATACCCCTTTTTCTGGAACTAAATATTGACACTACCATCCTTTCACAAATTAATAAAAACTCTACGTATTGACCCTACCATCCTTTCCCAAAATAATAAAAACTATACATAAAACTGGGGGGGGATTGCTTTTCATAATTCCATCTAAACTAAACCCCATTTTCGGGAACTCAAGGCTCATTCGTTTACTTCTTCCGGAGGCTTCTCACGGGTCAAAATGAAATATGTTATACTTGACCAATATCGTCTGAATATCGAGCACCTTGTCTTCATCAGCTTTATTGAGAGGGTTAAGCTAGCAGCCAGCAGGGAATTCTCAGATAAAACAACAATTAAAAGCTAAACCCCAATAAAAAATCAAAAAGTTCTATACTACTTCATACTTCAAAAGGAATTAAAAAAACTTCAAATTTTCAACCACCAAGCTTAATGCTGACTTGAATGACAAAAAAGGGATATCCTCTTTAAAA] [+] EMBL CB663378 [AATACTTGTAGTTTTGAATTTGATAATCTGATCGAAAAAATAGTTAACCCCAAAATCCTTTCCCAAAACCATGAGCTAAACGATTACTCTTGCTAACTCCAACTATACAATACCCCTTTTTCTGGAACTAAATATTGACACTACCATCCTTTCACAAATTAATAAAAACTCTACGTATTGACCCTACCATCCTTTCCCAAAATAATAAAAACTATACATAAAACTGGGGGGGGATTGCTTTTCATAATTCCATCTAAACTAAACCCCATTTTCGGGAACTCAAGGCTCATTCGTTTACTTCTTCCGGAGGCTTCTCACGGGTCAAAATGAAATATGTTATACTTGACCAATATCGTCTGAATATCGAGCACCTTGTCTTCATCAGCTTTATTGAGAGGGTTAAGCTAGCAGCCAGCAGGGAATTCTCAGATAAAACAACAATTAAAAGCTAAACCCCAATAAAAAATCAAAAAGTTCTATACTACTTCATACTTCAAAAGGAATTAAAAAAACTTCAAATTTTCAACCACCAAGCTTAATGCTGACTTGAATGACAAAAAAGGGATATCCTCTTTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13126#0 ATCCCCGATCCGTTCTCTCCCTCTTTCCTCCTTCCTCACCGTCGCTGCCGTCCTCCCCGG 60 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 CACTCCCATCCCTTTCTCCTCCATGCCGCACCCCTCCCCATCGTCGCAGCCGCCCCGTCG 120 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 CCCCTGCTCGCCTGCATCCACCACACCGCCTCCCTCCCCAGTCGAGACGGCGTTGCCTCC 180 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 TCGCCCCCTCCGCAGCCAGATTGACACCGCGCCGTTCAATCCACCGCCTCAAGCACCATG 240 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 CATCGTCGTCGTTGCAGGCGTCGGCACGGGCGCGGGCGCTGCCGATCCCGAGTCGAGACG 300 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 ACGTCGTCCGCTGCTGCTTCTCCACCACTGACGGTTGCCCTGCGTATATCCTCCCTATTA 360 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 TCGCGGTCCCCATCTGCTCCTGAATCCTGATCCACAAAAACAGCGGAGCGCCGTCGGCCT 420 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 CTCTGCCTCCCTGCGACCACCAGTGGCATCTGCCCCGCCGTCGGCTCTTCCTCACCCGCG 480 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 ACTCGCCGACGATGGTGCTCCACAAACCATTCAGGCCGTCACTGGTCTCCGGAGCGCCCG 540 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 AGGCCGACGTGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATA 600 consensus_13126#2 ---------TGTCTCGCACTCCCTATAATCTTGCTTTGCTGCATCAGTAACAACATCATA 51 consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------------ consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 ACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGA 660 consensus_13126#2 ACATATCGTGGTTCATACAATGGATCAGGCTGGTAATTCGATTCCAATTCTTGCTCCTGA 111 consensus_13126#1 ------------------------------------------------------------ consensus_13126#3 ------------------------------------------------------CCCTGA 6 consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 ACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCC 720 consensus_13126#2 ACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCC 171 consensus_13126#1 --------------------------------------------------------TGCG 4 consensus_13126#3 ACTTTTTTATTGGTGATTCCCTCTAATGTTCAGCAGATTGGGTTTGGTGGTGGCAGTGCC 66 consensus_13126#4 ------------------------AATACTTGTAGTTTTGAATTTGATAATCTGA---TC 33 consensus_13126#0 GCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGC 780 consensus_13126#2 GCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGC 231 consensus_13126#1 CCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGC 64 consensus_13126#3 GCACCACTGATTTGTGTTAGACATTGGTCCTTATCCAACCCTCTAATCTCTTGATTATGC 126 consensus_13126#4 GAAAAAATAGTTAACCCCAAAATCCTTTCCCAAAACCATGAGCTAAACGATTACTCTTGC 93 * * * ** * * *** * * * **** * ** * *** consensus_13126#0 TCACTTACGATG-ACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAG 839 consensus_13126#2 TCACTTACGATG-ACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAG 290 consensus_13126#1 TCACTTACGATG-ACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAG 123 consensus_13126#3 TCACTTACGATG-ACTTCAGCTCAGGTGGTTGCAAGAAACACTCCTAGACTGCTATTTAG 185 consensus_13126#4 TAACTCCAACTATACAATACCCCTTTTTCTGGAACTAAATATTG--ACACTACCATCCTT 151 * *** * ** * * * * * * * *** * * * *** * ** consensus_13126#0 TTTTACGTTA-CAGGGATTTGGC-TACAGATAGTTGCAAGCTGCAATGTTCTGATATTTG 897 consensus_13126#2 TTTTACGTTA-CAGGGATTTGGC-TACAGATAGTTGCAAGCTGCAATGTTCTGATATTTG 348 consensus_13126#1 TTTTACGTTA-CAGGGATTTGGC-TACAGATAGTTGCAAGCTGCAATGTTCTGATATTTG 181 consensus_13126#3 TTTTACGTTA-CAGGGATTTGGC-TACAGATAGTTGCAAGCTGCAATGTTCTGATATTTG 243 consensus_13126#4 TCACAAATTAATAAAAACTCTACGTATTGACCCTACCATCCTTTCCCAAAATAATAAAAA 211 * * *** * * * * ** ** * ** ** * *** consensus_13126#0 TTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTT 957 consensus_13126#2 TTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTT 408 consensus_13126#1 TTATGTTTTAGAGCAAGATCTGCCTTATATATAATGATATAATTAGGCTTCGAATTTCTT 241 consensus_13126#3 TTATGTTTTAGAGCAAGATCTGCCTTATATATAATGTTATAATTAGGCTTCGAATTTCTT 303 consensus_13126#4 CTATACATAAAACTGGGGGGGGATTGCTTTTCATAATTCCATCTAAACT--AAACCCCAT 269 *** * * * * * * * * * * * ** ** ** * * consensus_13126#0 GCTTATGTTCTTTAAAAAT-TCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGA 1016 consensus_13126#2 GCTTATGTTCTTTAAAAAT-TCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGA 467 consensus_13126#1 GCTTATGTTCTTTAAAAAT-TCCAAGTAACCTTTTCAGTTCTTTATGTCAGGTTAATTGA 300 consensus_13126#3 GCTTATGTTCTTTAAAAAT-TCCAAGTAACCTTTTCAGTTCTTTCTGTCAGGTTAATTGA 362 consensus_13126#4 TTTCGGGAACTCAAGGCTCATTCGTTTACTTCTTCCGGAGGCTTCTCACGGGTCAA--AA 327 * * ** * * * ** ** * * ** * * *** ** * consensus_13126#0 CAGATCGAGTTGCACTT-ACACATATCTTGT---TTTAGGAAATG----CTCCAATGGCC 1068 consensus_13126#2 CAGATCGAGTTGCACTT-ACACATATCTTGT---TTTAGGAAATG----CTCCAATGGCC 519 consensus_13126#1 CAGATCGAGTTGCACTT-ACACATATCTTGT---TTTAGGAAATG----CTCCAATGGCC 352 consensus_13126#3 CAGATCGAGTTGCACTT-ACACATATCTTGT---TTTAGGAAATG----CTCCAATGGCC 414 consensus_13126#4 TGAAATATGTTATACTTGACCAATATCGTCTGAATATCGAGCACCTTGTCTTCATCAGCT 387 * *** **** ** ***** * * * * * * ** ** ** consensus_13126#0 CT-TGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATA 1127 consensus_13126#2 CT-TGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATA 578 consensus_13126#1 CT-TGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATGGACAATA 411 consensus_13126#3 CT-TGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATA 473 consensus_13126#4 TTATTGAGAGGGTTAAGCTAGCAGCCAGCAGGGAATTCTCAGATAAAACAACAATTAAAA 447 * * * * ** * * ** * ** * * * * ** * consensus_13126#0 TCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATT-TCTTTCTGGGTGCATGCA 1186 consensus_13126#2 TCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATT-TCTTTCTGGGTGCATGCA 637 consensus_13126#1 TCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATT-TCTTTCTGGGTGCATGCA 470 consensus_13126#3 TCTATACCTCAAGGAAGCCTCTTCATGTTCCCCTCAATATT-TCTTTCTGGGTGCATGCA 532 consensus_13126#4 GCTAAACCCCAATAAAAAATCAAAAAGTTCTATACTACTTCATACTTCAAAAGGAATTAA 507 *** *** *** ** ** * **** * * * * *** * ** * consensus_13126#0 CTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTG 1246 consensus_13126#2 CTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGGTG 697 consensus_13126#1 CTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCTT 530 consensus_13126#3 CTCTATGCTTGCTATGCAAAACCCAATGTATGTGAATGTGATCCTTATGCTGCAAAGCT- 591 consensus_13126#4 AAAAACTTCAAATTTTCAACCACCAAGCTTAATGC---TGACTTGAATGACAAAAAAGGG 564 * * * *** **** * ** *** *** *** consensus_13126#0 CTACTATAAACACTTCGTTCTTTTATCTATTTATTTAAACATTCTTTGTTGGTGTCGGTG 1306 consensus_13126#2 CTACTATAAACACTTCGTTCTTTTATCTAAGGATTTAAACATTCTTTGTTGGTGTCGGTG 757 consensus_13126#1 A-ACCATCTCAATAAAGCTGATGAAGACAAGGTGCTCGATATTCA--GACGATATTGGTC 587 consensus_13126#3 -------------------GATGAAGACAAGGTGCTCGATATTCA--GACGATATTGGTC 630 consensus_13126#4 ATATC------------CTCTTTAAAA--------------------------------- 579 * * consensus_13126#0 CATTGCCTCTGAATTTTAGATCTTTTTTAGTGCAAAATGCATATGAATGTGTGGCATTGA 1366 consensus_13126#2 CAA-ACAAAAAAAGA--------------------------------------------- 771 consensus_13126#1 AAGTATAAC-ATATTTCATATTGACCAGTGAGAAGCATCCAGAAGAAGTAAACGAATGAG 646 consensus_13126#3 AAGTATAAC-ATATTTCATATTGACCAGTGAGAAGCATCCGGAAGAAGTAAACGAATGAG 689 consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 TATTCCCTTGGAGATGAAACAAGGTATTCAGTGTTTGCAAATTAACATTTACGAGTAGGA 1426 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 CATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCACCCT-C 705 consensus_13126#3 CATTGAGTTCCAGAAAATGGTGTATAGTATAGATGGAATTATGAAAAGCAATCAACCTGC 749 consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 TTTACCTAGCTAGCATGGCCTCTTTCATAGCCACTTTTGCATGTATGAATCTTTGTAAAT 1486 consensus_13126#2 ------------------------------------------------------------ consensus_13126#1 ATGTTTTATGTATAGTTTTTATTATTTTGTGAAAGGATGGTAGTGTCAATATGTAGAGGT 765 consensus_13126#3 ATGTTTTATGTATAGTTTTTA--------------------------------------- 770 consensus_13126#4 ------------------------------------------------------------ consensus_13126#0 TGTGGTCCTATAGGCAAATAGAAAGGTAAAA--------- 1517 consensus_13126#2 ---------------------------------------- consensus_13126#1 TTTATTAATTTGTGAAAGGATGGTAGTGTCAATAAAAAGA 805 consensus_13126#3 ---------------------------------------- consensus_13126#4 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||