These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1316 fasta sequence [AATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAANNCCNCCCGCCCCAA-AATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGA-TCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC----TTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTC-GTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCAAAAATCCCCTCTTGTTTTTTTCTTCTCTCATCGGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGCCCCACTGCCAA] [+] EMBL AU055803 [AATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAANNCCNCCCGCCCCAA AATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCGCCCGCGGGTTCCTGAGCCCCGCGCGCGCG GATTCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC TTTTTTNTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCA TGTTCGGTAGAGAAATTGTTTTNGGGGGCTTTTCCAACCAATCCTGCAGCGATT CCCGCAGAAA CTCTNA CAT TATCAAAAncctctgg ] [+] EMBL AK100927 [ GGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAA AATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGA TCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC TTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTC GTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCAAAAATCCCCTCTTGTTTTTTTCTTCTCTCATCGGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGCCCCAC ] [+] EMBL CB630595 [ CCAACAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGG AAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGA TCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTCTTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTC GTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCTCCATCTATCAAAAATACCCTCTTGTTTTTTTCTTCTCTCATC GGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCAC ] [+] EMBL AU197557 [ CAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGA TCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC TTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTC ] [+] EMBL CB637506 [ GGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC TTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTC GTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCAAAAATCCCCTCTTGTTTTTTTCTTCTCTCATCGGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCANGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGG ] [+] EMBL CB666733 [ AAGGAGGCGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCCGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAAGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGATTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCCACCAGCGAATGCCCCACTGCCAA] [+] EMBL CB666034 [ GCTCCCGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGCCCCAC ] [+] EMBL AU055998 [ ncaCAAGAAAGGTCTTGAGCAGACTGTCCATNTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGNCCCAC ] consensusID : consensus_13138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGGTTCTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGGTTTTGGGGGCTGTTACACCCAGTCCTGCATCGAATCCCCTGAGAAACCCTCTACCATCTATCAAAATACACTCTTGGATGTTGCTTTCTAACGGGGGGAAAAAATAGAAGATCCGCTGTTTGGTGGGCGAATCTGACGCCTTATAGGCTGCGGAAGCCAGGAAGGAGTGGGGTGTCTCTAGTAACTGCGTTGATTCATCTGAAGTTTGTACTTAGGACATGGACTAAGATTGTTGCATGACTATGATGAATAATAGTGTAGGACAAAGCTGCGAGTTGATTATGACGTAAGTGCAGAGATGGTATTACTAGCTTCATTCGTGATAGTGAGGATAAAAGTGTATCTAACCTAGAGATTGTAAGCGCCTCAGTAAGATATGGTAG] [+] EMBL AW155022 [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGGTTCTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGGTTTTGGGGGCTGTTACACCCAGTCCTGCATCGAATCCCCTGAGAAACCCTCTACCATCTATCAAAATACACTCTTGGATGTTGCTTTCTAACGGGGGGAAAAAATAGAAGATCCGCTGTTTGGTGGGCGAATCTGACGCCTTATAGGCTGCGGAAGCCAGGAAGGAGTGGGGTGTCTCTAGTAACTGCGTTGATTCATCTGAAGTTTGTACTTAGGACATGGACTAAGATTGTTGCATGACTATGATGAATAATAGTGTAGGACAAAGCTGCGAGTTGATTATGACGTAAGTGCAGAGATGGTATTACTAGCTTCATTCGTGATAGTGAGGATAAAAGTGTATCTAACCTAGAGATTGTAAGCGCCTCAGTAAGATATGGTAG] consensusID : consensus_13138#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [AAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTCTTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCTCCATCTATCAAAAATACCCTCTTGTTTTTTTCTTCTCTCATCGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGTATTAGCACTGCCCTGATTCAACTTATATCAGCACTGTTCTTCGTCCCCTGTGTTATAGATAAAAAGATGGTCTGTC] [+] EMBL CB628644 [AAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTCTTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCTCCATCTATCAAAAATACCCTCTTGTTTTTTTCTTCTCTCATCGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGTATTAGCACTGCCCTGATTCAACTTATATCAGCACTGTTCTTCGTCCCCTGTGTTATAGATAAAAAGATGGTCTGTC] consensusID : consensus_13138#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTTNTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCANAAATCCCCTCTTGGTNTNTCTTCTCTCATCGGGGGAAAAAANAAGAGATCCCCTTTTTGGTTGCCGACTTGAGCCCGCATGGGCTGCAGCATCCAGGAAGAGCTGTGTATCACAGGTAACTACGGNACGCGATGGGATTCGGCGCTCGGNCAGGGGCGGTTTGAGTGGTCACAAGAAGGAGATCCTTGATGCCAACAGCGCCTGACTGACAGGGTAGGGTATAGTTGGTCAAGTACCTACCA] [+] EMBL AW155293 [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTTNTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCANAAATCCCCTCTTGGTNTNTCTTCTCTCATCGGGGGAAAAAANAAGAGATCCCCTTTTTGGTTGCCGACTTGAGCCCGCATGGGCTGCAGCATCCAGGAAGAGCTGTGTATCACAGGTAACTACGGNACGCGATGGGATTCGGCGCTCGGNCAGGGGCGGTTTGAGTGGTCACAAGAAGGAGATCCTTGATGCCAACAGCGCCTGACTGACAGGGTAGGGTATAGTTGGTCAAGTACCTACCA] consensusID : consensus_13138#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGNGGTCGACGAATTCCGCAACCCGTTGGTTCTTTTTTTTTCTTTTCCTCGATTGGTTTTCTGCGCGATTCCGATTCCGGCGAAATTTTTTTCTTTTTGGGCTTCCCTGTTCATTCTGAACTGCGCAGCTGTTCGTAAAAGAAATGGTTTTTGGGGCCTTTTCAACCCAATCTTGCACGAATTCCCCGAAAAAACTTTTAACCATTTTTCAAAAATCCCCTCTGGTTNTTTCCTTCTCTCATCGGGGGGAAAAAAAGAGAAGACCTCTTTTTGGGTGGCAATCTTGAGCCCATTGGGGCTGCAGAATCCAGGAAGGACTGGGTATACAGGTAACTACGCAACGCCATGGATCGGCGCCTGGCACAGGCCATGTCTGAGGGATCAATGAAGGAAACCCCTGTGGTCAAAGAAGGCAGTCAGAATGGGTAAGGCTTTAATTGGCAATAAACCC] [+] EMBL AW155292 [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGNGGTCGACGAATTCCGCAACCCGTTGGTTCTTTTTTTTTCTTTTCCTCGATTGGTTTTCTGCGCGATTCCGATTCCGGCGAAATTTTTTTCTTTTTGGGCTTCCCTGTTCATTCTGAACTGCGCAGCTGTTCGTAAAAGAAATGGTTTTTGGGGCCTTTTCAACCCAATCTTGCACGAATTCCCCGAAAAAACTTTTAACCATTTTTCAAAAATCCCCTCTGGTTNTTTCCTTCTCTCATCGGGGGGAAAAAAAGAGAAGACCTCTTTTTGGGTGGCAATCTTGAGCCCATTGGGGCTGCAGAATCCAGGAAGGACTGGGTATACAGGTAACTACGCAACGCCATGGATCGGCGCCTGGCACAGGCCATGTCTGAGGGATCAATGAAGGAAACCCCTGTGGTCAAAGAAGGCAGTCAGAATGGGTAAGGCTTTAATTGGCAATAAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13138#1 ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAAT 60 consensus_13138#3 ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAAT 60 consensus_13138#4 ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAAT 60 consensus_13138#0 --------------------------------------------AATTAATTAACAGAAT 16 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 ACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCG 120 consensus_13138#3 ACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCG 120 consensus_13138#4 ACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCG 120 consensus_13138#0 ACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCG 76 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 CATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 180 consensus_13138#3 CATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 180 consensus_13138#4 CATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 180 consensus_13138#0 CATTGAAAANNCCNCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 136 consensus_13138#2 ------AAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 54 *** ** ********************************************** consensus_13138#1 GAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 240 consensus_13138#3 GAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 240 consensus_13138#4 GAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 240 consensus_13138#0 GAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 196 consensus_13138#2 GAAA-TCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 113 **** ******************************************************* consensus_13138#1 CCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGGTTC 300 consensus_13138#3 CCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC 300 consensus_13138#4 CCTCGGGGTACTCGGATTCCGCCCGCACGGNGGTCGACGAATTCCGCAACCCGTTGGTTC 300 consensus_13138#0 CCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC 256 consensus_13138#2 CCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC 173 ****************************** ************************* *** consensus_13138#1 TT----TTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAAT 356 consensus_13138#3 TT----TNTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAAT 356 consensus_13138#4 TT----TTTTTTT-CTTTTCCTCGATTGGTTTT-CTGCGCGATTCCGATTCCGGCGAAAT 354 consensus_13138#0 TT----TTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAAT 312 consensus_13138#2 TTCTTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAAT 233 ** * ***** ******************* ********************** *** consensus_13138#1 TTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGA-GAAATT 415 consensus_13138#3 TTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGA-GAAATT 415 consensus_13138#4 TTTTTTCTTTTTGGGCTTCCCTGTTCATTCTGAACTGCGCAGCTGTTCGTAAAAGAAATG 414 consensus_13138#0 TTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGA-GAAATT 371 consensus_13138#2 TTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGA-GAAATT 292 ****** **** ** ********* *********************** * ***** consensus_13138#1 GGTTTTGGGGGCTGTTACACCCAGTCCTGCATCGAATCCCCTGAGAAACCCTCTACCATC 475 consensus_13138#3 GTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATC 475 consensus_13138#4 GTTTTTGGGGCCTTTTCAACCCAATCTTGCACGAATTCCCCGAAAAAACTTTTAACCATT 474 consensus_13138#0 GTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATC 431 consensus_13138#2 GTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCTCCATC 352 * ******** ** ** ***** ** **** * ***** * **** **** consensus_13138#1 TATCAAAA-TACACTCTTGGATGTTGCTT-TCTAA-CGGGGG-GAAAAAATAGAAGATCC 531 consensus_13138#3 TATCANAAATCCCCTCTTGGTNTNTCTTC-TCTCA-TCGGGG-GAAAAAANAAGAGATCC 532 consensus_13138#4 TTTCAAAAATCCCCTCTGGTTNTTTCCTTCTCTCATCGGGGG-GAAAAAAAGAGAAGACC 533 consensus_13138#0 TATCAAAAATCCCCTCTTGTTTTTTTCTTCTCTCATCGGGGGGAAAAAAAAAGAAGATCC 491 consensus_13138#2 TATCAAAAATACCCTCTTGTTTTTTTCTTCTCTCATCGGGGG-AAAAAAAAAGAAGATCC 411 * *** ** * * **** * * * *** * **** ****** * ** consensus_13138#1 GCTGTTTGG-TGGGCGAATCTGACGCCTTATAGG-CTGCGG-AAGCCAGGAAGGAGTGGG 588 consensus_13138#3 CCTTTTTGG-TTGCCGA-CTTGAGCCCGCATGGG-CTGCAG-CATCCAGGAAG-AGCTGT 587 consensus_13138#4 TCTTTTTGG-GTGGCAATCTTGAGCCCATTGGGG-CTGCAG-AATCCAGGAAG-GACTGG 589 consensus_13138#0 CCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGG 551 consensus_13138#2 CCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGG 471 ** ***** * * * *** ** ** **** * * *** * ** * consensus_13138#1 -GTGTC-TCTAGT-AACTGCGTTGATTCATCTGAAGTTTG--TACTTAGGACATGGACTA 643 consensus_13138#3 -GTATC-ACAGGT-AACTACGGNACGCGAT--GGGATTCG--GCGCTCGGNCAGGGGC-- 638 consensus_13138#4 -GTAT--ACAGGT-AACTACGCAACGCCAT---GGATCGG--CGCCT--GGCACAGGCCA 638 consensus_13138#0 TGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCG 611 consensus_13138#2 TGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCG 531 ** * * ** **** ** * * * * * consensus_13138#1 AGATTGTTGCATGA--CTATGATGAATAATAG-TGTAGGACAAAGCTGCGAGTTGATTAT 700 consensus_13138#3 -GGTT--TGAGTGG--TCACAA-GAAGGAGAT-CCTTGATGCCAACAGCGC-CTGACTGA 690 consensus_13138#4 TGTCTGAGGGAT----CAATGAAGGAAACCCC-TGTGGTCAAAGAAGGCAGTCAGAATG- 692 consensus_13138#0 CAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGC 671 consensus_13138#2 CAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGC 591 * * * * * * * ** consensus_13138#1 GACGTAAGTGCAGAGATGGTATTACTAGCTTCATTCGTGATAGTGAGGATAAAAGTGTAT 760 consensus_13138#3 CAGGGTAGGGTATAGTTGGT-CAAGTACCTACCA-------------------------- 723 consensus_13138#4 --GGTAAGGCTTTAATTGGCAATAAACCC------------------------------- 719 consensus_13138#0 CTGATCTGATCA-ATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTAC 730 consensus_13138#2 CTGATCTGATCA-ATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTAC 650 * * *** consensus_13138#1 CTAACCTAGAGATTGTA-AGCGCCTCAGTAAGATATGGTAG------------------- 800 consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 CGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAG 790 consensus_13138#2 CGTCCTGG----TATTA--GCACTGCCCTG----ATTCAACTTATATCAGCACTGTTCT- 699 consensus_13138#1 ------------------------------------------------------------ consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 ACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCAC 850 consensus_13138#2 -TCGTCCCCTGTGTTATAGATAA-AAAGATGGTCTGTC---------------------- 735 consensus_13138#1 ------------------------------------------------------------ consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 ACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGA 910 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 ------------------------------------------------------------ consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 CGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCA 970 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 ------------------------------------------------------------ consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 TTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGA 1030 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 ------------------------------------------------------------ consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 AATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAA 1090 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 ------------------------------------------------------------ consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 CCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCC 1150 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 ------------------------------------------------------------ consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 AATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTG 1210 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 ------------------------------------------------------------ consensus_13138#3 ------------------------------------------------------------ consensus_13138#4 ------------------------------------------------------------ consensus_13138#0 TGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAG 1270 consensus_13138#2 ------------------------------------------------------------ consensus_13138#1 ---------------------------------------------- consensus_13138#3 ---------------------------------------------- consensus_13138#4 ---------------------------------------------- consensus_13138#0 GTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGCCCCACTGCCAA 1316 consensus_13138#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||