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Oryza sativa
cluster # 13141 cluster # 13141       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13141#0 length = 1636 sequences # 9  
consensus_13141#1 length = 1102 sequences # 3  

consensusID : consensus_13141#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1636
fasta sequence
                              [GCCTCATAAAACACGCCACGCCTCATCTGACTCTTCTTCCCCCTTCCTCCCTCCCGAGCTCCGCCCGCCCGCCCGCCGCCGCCGCCGTCGAGTTCGCCGCACCTCTCGCACGGCCCCCACCCCGCGCTTCCTTCCTCGTCGGACCGCCCGCGACCGCGAGCCTGCCTCCCGTCCAAGTTGACGGGAACCCTCGCCGCGGAAGACCGCGGAGAGGTGGGGGGCCGCGTCCCGACCCCGGCGGTGGTCGATCGGTTCCGGACGAGAGGAGCGATGCAGGGCGGCGTGTCCGGATTCCAGAACGCGCCGGTGACGCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCCCAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCAGGGGATTGTCAAAAACTTCCGTCTATGGAAGTTGTTTGCATCTGGGTTTGCCTTTCAGTCAACACCGGAGCTATTGTTTGGAGTCTACCTGCTCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTGAAAGACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCATTCATTCCATTCTTTCTTGACA-TTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCC-GTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCCCCAGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAGCTAACTTAATGCGACTT-CCCTGGAAACA-TTGCGGGCAGAATTGGTGATATTTCTAAGATGAGGCAACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCACTTGCCACTGGTACCATGATTTGATGAGAAGTTCCACTCGGCTCTTGCTAGCTGTCAGGCGTCTGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCACCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAATTTGTGCCTCGTGATCAGTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGGTCAGGAAAACTGAACCCGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK105874             [GCCTCATAAAACACGCCACGCCTCATCTGACTCTTCTTCCCCCTTCCTCCCTCCCGAGCTCCGCCCGCCCGCCCGCCGCCGCCGCCGTCGAGTTCGCCGCACCTCTCGCACGGCCCCCACCCCGCGCTTCCTTCCTCGTCGGACCGCCCGCGACCGCGAGCCTGCCTCCCGTCCAAGTTGACGGGAACCCTCGCCGCGGAAGACCGCGGAGAGGTGGGGGGCCGCGTCCCGACCCCGGCGGTGGTCGATCGGTTCCGGACGAGAGGAGCGATGCAGGGCGGCGTGTCCGGATTCCAGAACGCGCCGGTGACGCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCCCAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCAGGGGATTGTCAAAAACTTCCGTCTATGGAAGTTGTTTGCATCTGGGTTTGCCTTTCAGTCAACACCGGAGCTATTGTTTGGAGTCTACCTGCTCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTGAAAGACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCATTCATTCCATTCTTTCTTGACA TTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCC GTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCCCCAGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAGCTAACTTAATGCGACTT CCCTGGAAACA TTGCGGGCAGAATTGGTGATATTTCTAAGATGAGGCAACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCACTTGCCACTGGTACCATGATTTGATGAGAAGTTCCACTCGGCTCTTGCTAGCTGTCAGGCGTCTGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCACCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAATTTGTGCCTCGTGAT                                                                                                                             ]
[+] EMBL AK073347             [                      TCATCTGACTCTTCTTCCCCCTTCCTCCCTCCCGAGCTCCGCCCGCCCGCCCGCCGCCGCCGCCGTCGAGTTCGCCGCACCTCTCGCACGGCCCCCACCCCGCGCTTCCTTCCTCGTCGGACCGCCCGCGACCGCGAGCCTGCCTCCCGTCCAAGTTGACGGGAACCCTCGCCGCGGAAGACCGCGGAGAGGTGGGGGGCCGCGTCCCGACCCCGGCGGTGGTCGATCGGTTCCGGACGAGAGGAGCGATGCAGGGCGGCGTGTCCGGATTCCAGAACGCGCCGGTGACGCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCCCAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCAGGGGATTGTCAAAAACTTCCGTCTATGGAAGTTGTTTGCATCTGGGTTTGCCTTTCAGTCAACACCGGAGCTATTGTTTGGAGTCTACCTGCTCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTGAAAGACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCATTCATTCCATTCTTTCTTGACA TTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCC GTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCCCCAGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAGCTAACTTAATGCGACTT CCCTGGAAACA TTGCGGGCAGAATTGGTGATATTTCTAAGATGAGGCAACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCACTTGCCACTGGTACCATGATTTGATGAGAAGTTCCACTCGGCTCTTGCTAGCTGTCAGGCGTCTGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCACCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAATTTGTG                                                                                                                                      ]
[+] EMBL CB653467             [                                                                     CGCCCGCCGCCGCCGCCGTCGAGTTCGCCGCACCTCTCGCACGGCCCCCACCCCGCGCTTCCTTCCTCGTCGGACCGCCCGCGACCGCGAGCCTGCCTCCCGTCCAAGTTGACGGGAACCCTCGCCGCGGAAGACCGCGGAGAGGTGGGGGGCCGCGTCCCGACCCCGGCGGTGGTCGATCGGTTCCGGACGAGAGGAGCGATGCAGGGCGGCGTGTCCGGATTCCAGAACGCGCCGGTGACGCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCCCAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCAGGGGATTGTCAAAAACTTCCGTCTATGGAAGTTGTTTGCATCTGGGTTTGCCTTTCAGTCAACACCGGAGCTATTGTTTGGAGTCTACCTGCTCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTGAAAGACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCATTCATTCCATTCTTTCTTGACA TTCCTGTCGCATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATATGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB657984             [                                                                                                                                                                                                                                                                                                                       GCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCCCAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCAGGGGATTGTCAAAAACTTCCGTCTATGGAAGTTGTTTGCATCTGGGTTTGCCTTTCAGTCAACACCGGAGCTATTGTTTGGAGTCTACCTGCTCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTGAAAGACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCATTCATTCCATTCTTTCTTGACA TTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCC GTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCCCCAGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF318192             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCATTCATTCCATTCTTTCTTGACA TTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTATCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGAAGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCC GTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCCCCACAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB657985             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCTTTC TGACATTTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCC GTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCCCCAGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAGCTAACTTAATGCGACTT CCCTGGAAACA TTGCGGGCAGAATTGGTGATATTTCTAAGATGAGGCAACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCACTTGCCACTGGTACCATGATTTGATGAGAAGTTCCACTCGGCTCTTGCTAGCTGTCAGGCGTCTGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCACCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAAACATTGGAA                                                                                                                                                                    ]
[-] EMBL CB653468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCC GTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCCCCAGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAGCTAACTTAATGCGACTT CCCTGGAAACA TTGCGGGCAGAATTGGTGATATTTTTAAGATGAGGCAACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCACTTGCCACTGGTACCATGATTTGATGAGAAGTTCCACTCGGCTCTTGCTAGCTGTCAGGCGTCTGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCACCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAA                                                                                                                                                        ]
[+] EMBL BQ907651             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGAGTTCTCGTACAACCCGGTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCCCCAGAATCTTCGATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAACTAACTTAATGCGACTTCCCCTGGAAACACTTGCGGGCAGAATTGGTGATATTTCTAAGATGAGGCAACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCACTTGCCACTGGTACCATGATTTGATGAGAAGTTCCACTCGGCTCTTGCTAGCTGTCAGGCGTCAGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCACCTTACAGATGATGTATAATTCC AATTCAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAAaa                                                                                                                                          ]
[-] EMBL CF318191             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACTCGTTGAGCTAACTTAATGCGACTT CCCGGGAAACA TTGCGGGCAGAATTGGTGATATTTTTAAGATGAGGCAACATGTTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCACTTGCCACTGGTCCCATGATTTGATGAGAAGTTCCACTCGGCTCTTGCTAGCTGTCAGGCGTCTGCTTAGGAAGTCAGCAAACATTTCCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCCCCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAACCATTGGAATCATAGTGTAAAATTCTTTAGAAATTTGTGCCTCGTGATCAGTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGGTCAGGAAAACTGAACCCGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13141#0 GCCTCATAAAACACGCCACGCCTCATCTGACTCTTCTTCCCCCTTCCTCCCTCCCGAGCT CCGCCCGCCCGCCCGCCGCCGCCGCCGTCGAGTTCGCCGCACCTCTCGCACGGCCCCCAC CCCGCGCTTCCTTCCTCGTCGGACCGCCCGCGACCGCGAGCCTGCCTCCCGTCCAAGTTG ACGGGAACCCTCGCCGCGGAAGACCGCGGAGAGGTGGGGGGCCGCGTCCCGACCCCGGCG GTGGTCGATCGGTTCCGGACGAGAGGAGCGATGCAGGGCGGCGTGTCCGGATTCCAGAAC GCGCCGGTGACGCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCC CAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCAGGGGATTGTCAAAAACTTCCGTCTA TGGAAGTTGTTTGCATCTGGGTTTGCCTTTCAGTCAACACCGGAGCTATTGTTTGGAGTC TACCTGCTCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGGTT TTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTG AAAGACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCA TTCATTCCATTCTTTCTTGACATTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAAC TTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAG CGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTG CTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTC GCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCT CGTACAAGCCGTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGCCC CCAGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAG GCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCGCAG ACTCGTTGAGCTAACTTAATGCGACTTCCCTGGAAACATTGCGGGCAGAATTGGTGATAT TTCTAAGATGAGGCAACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGC GCTGCTAATTTTATTCACTTGCCACTGGTACCATGATTTGATGAGAAGTTCCACTCGGCT CTTGCTAGCTGTCAGGCGTCTGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGT TATCTATGTCAATATTTAAATTTCTCTCACCTTACAGATGATGTATAATTCCAAATTCAG CTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAATTTG TGCCTCGTGATCAGTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGGTCA GGAAAACTGAACCCGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAAAAAAA AAAAAAAAAAAAAAAA



consensusID : consensus_13141#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1102
fasta sequence
                              [TGGATGTTCTGGAAACTGATTGGCTGTTGTCTAGATAAGAAAATGTCAAGACACCACGTACTTCAGCACTCTTGCATGTGGACCTTATGCCCTTATATGTGCCTCATTCATTCCATTCTGTCTTGACATTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCGTTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCCGTGCTGTGCAGAACAATCAACCATCTGGA-TCGCTCCCCGTCGTGGAGCCCCCCAGAATCTTCGATCCTTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACCCGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAACTAACTTAATGCGACTTCCCTGGAAACATTGCGGGCAGAATTGGTGATATTTTTAAGATGAGGCAACATGCTGAGGTCCCTTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCCCTTGCCCCTGGTACCATGATTTGATGAGAAGTTCCCCTCGGCTCTTGCTAGCTGTCAGGCGTCAGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCCCCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAATTTGTGCCTCGTGATCAGTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGGTCAGGAAAACTGAAACCGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAATTTTATGCTTGGTTTGGGTTAAAAAAAAAAAAAAAAAAAA]

[-] EMBL BU673250             [TGGATGTTCTGGAAACTGATTGGCTGTTGTCTAGATAAGAAAATGTCAAGACACCACGTACTTCAGCACTCTTGCATGTGGACCTTATGCCCTTATATGTGCCTCATTCATTCCATTCTGTCTTGACATTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCGTTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCCGTGCTGTGCAGAACAATCAGCCATCTGGATTCGCT CCTGTCGTGGAG CCCCCAGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAGCTAACTTAATGCGACTTCCGTGGAAACATTGCGGGCAGAATTGGTGATATTTCTAAGATGAGGC ACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCACTT                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CA760179             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  AACCATCTGGA TCGCTCCCCGTCGTGGAGCCCCCCAGAATCTTCGATCCTTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACCCGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAACTAACTTAATGCGACTTCCCTGGAAACATTGCGGGCAGAATTGGTGATATTTTTAAGATGAGGCAACATGCTGAGGTCCCTTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCCCTTGCCCCTGGTACCATGATTTGATGAGAAGTTCCCCTCGGCTCTTGCTAGCTGTCAGGCGTCAGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCCCCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAATTTGTGCCTCGTGATCAGTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGGTCAGGAAAACTGAAACCGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAATTTTATGCTTGGTTTGGGTTAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760180             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  AACCATCTGGA TCGCTCCCCGTCGTGGAGCCCCCCAGAATCTTCGATCCTTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAGCCAGAAATGACATCAACCCGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAACTAACTTAATGCGACTTCCCTGGAAACATTGCGGGCAGAATTGGTGATATTTTTAAGATGAGGCAACATGCTGAGGTCCCTTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTATTCCCTTGCCCCTGGTACCATGATTTGATGAGAAGTTCCCCTCGGCTCTTGCTAGCTGTCAGGCGTCAGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAATATTTAAATTTCTCTCCCCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAATTTGTGCCTCGTGATCAGTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGGTCAGGAAAACTGAAACCGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAATTTTATGCTTGGTTTGGGTTAAAAAAAAAAAAAAAAAAAA]


>consensus_13141#1 TGGATGTTCTGGAAACTGATTGGCTGTTGTCTAGATAAGAAAATGTCAAGACACCACGTA CTTCAGCACTCTTGCATGTGGACCTTATGCCCTTATATGTGCCTCATTCATTCCATTCTG TCTTGACATTCCTGTCACATCACGATTTCGTATTTTTGGTGTTAACTTCAGTGATAAATC ATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGAAGCGTTCTCTTATTCC TGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACGTGCTTGGCATCCGCAG GATGAAGATGCCACAGGTTATTGCATCGTTTTTCGCAAGAATTTTCGCACCTTCTTCGGG AGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTCGTACAAGCCGTGC TGTGCAGAACAATCAACCATCTGGATCGCTCCCCGTCGTGGAGCCCCCCAGAATCTTCGA TCCTTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGACAGGCGCTAATGCGAG CCAGAAATGACATCAACCCGGCCACGAACATCCTCCTTGAAGCGCAGACTCGTTGAACTA ACTTAATGCGACTTCCCTGGAAACATTGCGGGCAGAATTGGTGATATTTTTAAGATGAGG CAACATGCTGAGGTCCCTTAGGCAGCAGATTGGCGACGAAATGGTGCGCTGCTAATTTTA TTCCCTTGCCCCTGGTACCATGATTTGATGAGAAGTTCCCCTCGGCTCTTGCTAGCTGTC AGGCGTCAGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACGGGTTATCTATGTCAAT ATTTAAATTTCTCTCCCCTTACAGATGATGTATAATTCCAAATTCAGCTTGTAGGATAGA TGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAATTTGTGCCTCGTGATCA GTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGGTCAGGAAAACTGAAAC CGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAATTTTATGCTTGGTTTGGG TTAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13141#0      GCCTCATAAAACACGCCACGCCTCATCTGACTCTTCTTCCCCCTTCCTCCCTCCCGAGCT 60
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      CCGCCCGCCCGCCCGCCGCCGCCGCCGTCGAGTTCGCCGCACCTCTCGCACGGCCCCCAC 120
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      CCCGCGCTTCCTTCCTCGTCGGACCGCCCGCGACCGCGAGCCTGCCTCCCGTCCAAGTTG 180
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      ACGGGAACCCTCGCCGCGGAAGACCGCGGAGAGGTGGGGGGCCGCGTCCCGACCCCGGCG 240
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      GTGGTCGATCGGTTCCGGACGAGAGGAGCGATGCAGGGCGGCGTGTCCGGATTCCAGAAC 300
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      GCGCCGGTGACGCGGGCCGTCGTCCTCGCCAGCGGCCTCCTCTCCGTCGTCTTCAGCGCC 360
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      CAGCGCCGCGCCCGCGCCCTCGTCCTCTCCCACCAGGGGATTGTCAAAAACTTCCGTCTA 420
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      TGGAAGTTGTTTGCATCTGGGTTTGCCTTTCAGTCAACACCGGAGCTATTGTTTGGAGTC 480
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      TACCTGCTCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGGTT 540
consensus_13141#1      ------------------------------------------------------------
                                                                                   

consensus_13141#0      TTTAGTTTATTCACTATCTCAGTATC--ATTGCTTCTTGAGATCCTATCTTTGGTTCTCC 598
consensus_13141#1      ----------TGGATGTTCTGGAAACTGATTGGCTGTTG----TCTAGATAAGAAAATGT 46
                                 *   * *    * * *  ****  * ***     ***  *  *    *  

consensus_13141#0      TGAAAGACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCT 658
consensus_13141#1      C--AAGACACCACGTACTTCAGCACTCTTGCATGTGGACCTTATGCCCTTATATGTGCCT 104
                          *********  *** *************************** ******** *****

consensus_13141#0      CATTCATTCCATTCTTTCTTGACATTCCTGTCACATCACGATTTCGTATTTTTGGTGTTA 718
consensus_13141#1      CATTCATTCCATTCTGTCTTGACATTCCTGTCACATCACGATTTCGTATTTTTGGTGTTA 164
                       *************** ********************************************

consensus_13141#0      ACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGA 778
consensus_13141#1      ACTTCAGTGATAAATCATTCATATACCTAGCTGGCCTGCAGCTGCTTTTATCTTCTGGGA 224
                       ************************************************************

consensus_13141#0      AGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACG 838
consensus_13141#1      AGCGTTCTCTTATTCCTGGTATTTGTGGTCTGATTGCTGGTTCTCTCTATCGTCTGAACG 284
                       ************************************************************

consensus_13141#0      TGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTT 898
consensus_13141#1      TGCTTGGCATCCGCAGGATGAAGATGCCACAGGTTATTGCATCGTTTTTCGCAAGAATTT 344
                       ******************************************* ****************

consensus_13141#0      TCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTT 958
consensus_13141#1      TCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTT 404
                       ************************************************************

consensus_13141#0      CTCGTACAAGCCGTGCTGTGCAGAACAATCAGCCATCTGGATTCGCTCCTGTCGTGGAGC 1018
consensus_13141#1      CTCGTACAAGCCGTGCTGTGCAGAACAATCAACCATCTGGATCGCTCCCCGTCGTGGAGC 464
                       ******************************* **********     ** **********

consensus_13141#0      CCCC-AGAATCTTCAATCGCTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGA 1077
consensus_13141#1      CCCCCAGAATCTTCGATCCTTATGCTGGTTTCGATGGGCTTTGATGGAAATGCTGCAAGA 524
                       **** ********* ***  ****************************************

consensus_13141#0      CAGGCGCTAATGCGAGCCAGAAATGACATCAACACGGCCACGAACATCCTCCTTGAAGCG 1137
consensus_13141#1      CAGGCGCTAATGCGAGCCAGAAATGACATCAACCCGGCCACGAACATCCTCCTTGAAGCG 584
                       ********************************* **************************

consensus_13141#0      CAGACTCGTTGAGCTAACTTAATGCGACTTCCCTGGAAACATTGCGGGCAGAATTGGTGA 1197
consensus_13141#1      CAGACTCGTTGAACTAACTTAATGCGACTTCCCTGGAAACATTGCGGGCAGAATTGGTGA 644
                       ************ ***********************************************

consensus_13141#0      TATTTCTAAGATGAGGCAACATGCTGAGGTCCATTAGGCAGCAGATTGGCGACGAAATGG 1257
consensus_13141#1      TATTTTTAAGATGAGGCAACATGCTGAGGTCCCTTAGGCAGCAGATTGGCGACGAAATGG 704
                       ***** ************************** ***************************

consensus_13141#0      TGCGCTGCTAATTTTATTCACTTGCCACTGGTACCATGATTTGATGAGAAGTTCCACTCG 1317
consensus_13141#1      TGCGCTGCTAATTTTATTCCCTTGCCCCTGGTACCATGATTTGATGAGAAGTTCCCCTCG 764
                       ******************* ****** **************************** ****

consensus_13141#0      GCTCTTGCTAGCTGTCAGGCGTCTGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACG 1377
consensus_13141#1      GCTCTTGCTAGCTGTCAGGCGTCAGCTTAGGAAGTCAGCAAACATTTGCCGTAGTTAACG 824
                       *********************** ************************************

consensus_13141#0      GGTTATCTATGTCAATATTTAAATTTCTCTCACCTTACAGATGATGTATAATTCCAAATT 1437
consensus_13141#1      GGTTATCTATGTCAATATTTAAATTTCTCTCCCCTTACAGATGATGTATAATTCCAAATT 884
                       ******************************* ****************************

consensus_13141#0      CAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAAT 1497
consensus_13141#1      CAGCTTGTAGGATAGATGATATATAAACATTGGAATCATAGTGTAAAATTCTTTAGAAAT 944
                       ************************************************************

consensus_13141#0      TTGTGCCTCGTGATCAGTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGG 1557
consensus_13141#1      TTGTGCCTCGTGATCAGTTCTAGCATCGATTCATGGATAAGTACTCTAATCATGTTTCGG 1004
                       ************************************************************

consensus_13141#0      TCAGGAAAACTGAACCCGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAAA- 1616
consensus_13141#1      TCAGGAAAACTGAAACCGGATAAAATTGAACAAAAATAACTAAATTTTTGTTCAAAAATT 1064
                       ************** *******************************************  

consensus_13141#0      ------------------AAAAAAAAAAAAAAAAAAAA 1636
consensus_13141#1      TTATGCTTGGTTTGGGTTAAAAAAAAAAAAAAAAAAAA 1102
                                         ********************




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)