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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 609 fasta sequence
[ACCACCGGCGCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT-ACGACA-GCGCCGCGC-TCC-ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG-CCCCGCCGCCGCCGCTGCCCAAGGCGGCGGCGCT-GGCCG-TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGGGACACGCCCGCCGCCGCCNCGGTGGCGGCCGCGGNCAAGGCCCAGGTGCCCGCCTCGCCTTCGCTCGATCTGAGCCTCGGGGATGTCGGNCATGGTGGCCGCCCAGCCGTTCCTGTTCCTCGCACCCAGGGTCGCGGTGACCGTGGAC]
[+] EMBL AU083511 [ACCACCGGCGCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACNACCACG CCCCGCCGCCGCCGCTGCCCAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGGGACACGC ]
[+] EMBL AU184879 [ ACCGGCGCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG CC ]
[+] EMBL AU071044 [ CGGCGCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGCTTCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACGACCCNGCNGCCGCCGCTGCCCAAGGCGGCGGCGCTGGGCCGTTCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGG ]
[+] EMBL AU083457 [ GGCGCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG CCCCGCCGCCGCCGCTGCCCAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGGGACACGCCCGCCGC ]
[+] EMBL AU083456 [ GGCGCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCG CGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG CCCCGCCGCCGCCGCTG CCAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGGGACACGCCCGCC ]
[+] EMBL CA753947 [ GCGCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG CCCCGNCGCCGCCGCTGCCCAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGGGACACGCCCGCCGCCGCCCCGGTGGCGGCCGCGGNCAAGGCCCAGGTGCCCGCCTCGCCTTCGCTCGATCTGAGCCTCGGGGATGTCGGNCATGGTGGCCGCCCAGCCGTTCCTGTTCCTCGCACCCAGGGTCGCGGTGACCGTGGAC]
[+] EMBL AU173832 [ GCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG CCCCGCCGCCGCCGCTGCCCAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCT ]
[+] EMBL AU183274 [ CCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCTAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG CCCCGCCGCCGNCGTTGCCCAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGC ]
[+] EMBL AU083502 [ AAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCTAACGACA GCGCCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACNACCACGACCCCGCCGCCGCCGCTGCCCAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCT ]
[+] EMBL AU083506 [ CCACCGGTCGAACACTTGGCG TCTCGCCCGCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGAACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCAGGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACA GCGCCGCGN TCCAACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG CCCCGCCGCCGCCGCTGCCCAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGGGACACGCCCGCCGCCGCCN ]
[+] EMBL AU083512 [ AGGTTCCGCGGNGTGAGGAAGCGCCCGTGGGGNNGGTACGCGGCGGAGATCCGCGACCCGGCCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT ACGACANGCACCGCGC TCC ACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCTTCGCGCACGCCCACCACCACG CCCCGCCGCCGCCGCTGCCNAAGGCGGCGGCGCT GGCCG TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGGGACACGCCCGCCGCCGCCNC ]
consensusID : consensus_13144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[GACCAGCAGTACGGTCGATTCGTCCTCCCGGGACACGCCCGCCGCCGCCCCGGTGGCGGCCGCGGTCAAAGCCCATGTGCCCGCCTCGCCTTCGCTCTATTTGAGCCTCGGGATGTCTGGCATGGTGGCCGCCCAGCCGTTCCTGTTCCTCGACCCCTGGGTCTTCCGGTGACCGTGGCCGTCACCGCAACCTGGTGCCTCACCGGGCCGGTCGTCTTCATCATCAAAAAAGGAAGTTTCTCTCGCCTGGAACAA]
[+] EMBL AF061643 [GACCAGCAGTACGGTCGATTCGTCCTCCCGGGACACGCCCGCCGCCGCCCCGGTGGCGGCCGCGGTCAAAGCCCATGTGCCCGCCTCGCCTTCGCTCTATTTGAGCCTCGGGATGTCTGGCATGGTGGCCGCCCAGCCGTTCCTGTTCCTCGACCCCTGGGTCTTCCGGTGACCGTGGCCGTCACCGCAACCTGGTGCCTCACCGGGCCGGTCGTCTTCATCATCAAAAAAGGAAGTTTCTCTCGCCTGGAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13144#0 ACCACCGGCGCCAAACCAACCACCCACCATCCACCGGTCGAACACTTGGCGCTCTCGCCC 60
consensus_13144#1 ------------------------------------------------------------
consensus_13144#0 GCCTTAGCTCGCTCTGCTCGTGGTGCTCGACCCGAACAAGAACGGACATGGCTCCCAGGA 120
consensus_13144#1 ------------------------------------------------------------
consensus_13144#0 ACGCCGCCGAGGCCGTCGCCGTCGCCGTGGCGGAGGGCGGAGGAGCCGGCATGGAGCCCA 180
consensus_13144#1 ------------------------------------------------------------
consensus_13144#0 GGTTCCGCGGCGTGAGGAAGCGCCCGTGGGGCAGGTACGCGGCGGAGATCCGCGACCCGG 240
consensus_13144#1 ------------------------------------------------------------
consensus_13144#0 CCAGGAAGGCGCGGGTGTGGCTCGGCACCTTCGACACCGCCGAGGCCGCGGCGCGCGCCT 300
consensus_13144#1 ------------------------------------------------------------
consensus_13144#0 ACGACAGCGCCGCGCTCCACTTCCGCGGGCCCAAGGCCAAGACCAACTTCCCCGTCGCCT 360
consensus_13144#1 ------------------------------------------------------------
consensus_13144#0 TCGCGCACGCCCACCACCACGCCCCGCCGCCGCCGCTGCCCAAGGCGGCGGCGCTGGCCG 420
consensus_13144#1 ------------------------------------------------------------
consensus_13144#0 TCGTCAGCCCGACCAGCAGCACGGTCGAGTCGTCCTCCCGGGACACGCCCGCCGCCGCCN 480
consensus_13144#1 ----------GACCAGCAGTACGGTCGATTCGTCCTCCCGGGACACGCCCGCCGCCGCCC 50
********* ******** ******************************
consensus_13144#0 CGGTGGCGGCCGCGGNCAAGGCCCAGGTGCCCGCCTCGCCTTCGCTCGATCTGAGCCTCG 540
consensus_13144#1 CGGTGGCGGCCGCGGTCAAAGCCCATGTGCCCGCCTCGCCTTCGCTCTATTTGAGCCTCG 110
*************** *** ***** ********************* ** *********
consensus_13144#0 GGGATGTCGGNCATGGTGGCCGCCCAGCCGTTCCTGTTCCTCGCACCCAGGGTCG--CGG 598
consensus_13144#1 GG-ATGTCTGGCATGGTGGCCGCCCAGCCGTTCCTGTTCCTCGACCCCTGGGTCTTCCGG 169
** ***** * ******************************** *** ***** ***
consensus_13144#0 TGACCGTGGAC------------------------------------------------- 609
consensus_13144#1 TGACCGTGGCCGTCACCGCAACCTGGTGCCTCACCGGGCCGGTCGTCTTCATCATCAAAA 229
********* *
consensus_13144#0 --------------------------
consensus_13144#1 AAGGAAGTTTCTCTCGCCTGGAACAA 255
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||