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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 595 fasta sequence
[GTGCCCCTTCTGCCAGGCCATGGAGGCGTCCTACCTGGAGCTCGCCGAGAGG-TGGGCGGCGCGGGCGGCGGCGTGAAGGTGGGCAAGTTCC-CG-CCGACG-GGA-GCAGAAGGCGTTC-GCGCA-CAGG-AGCTGC-AGCTGCAGAGCTTCCCGACC-ATCCTCCTC-TTCCCGAGCCGCACC-G-CGAGGCCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTC-GC-C-TTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCA-TTTGTTCTTGGCATCCAA-TGGC-AATCGAC-TTGGCGAC-GACCATGATCCGGTGTATT--AGTATT-AGGGTGAGA-TGGGTT-AAG-TTGGGAAT-C-GGGGAGGTCAGAGGAAGGGGTCGGGGTCAGGGTTCAGAT-GCAGTTGCTGCATCTATAGCTTTTGCTGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAGGAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAACA-GAGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTATGGAGCTTTTTGTCATGTTAAAAAAAAAAAAAA]
[+] EMBL AU062587 [GTGCCCCTTCTGCCAGGCCATGGAGGCGTCCTACCTGGAGCTCGCCGAGAGG TGGGCGGCGCGGGCGGCGGCGTGAAGGTGGGCAAGTTCCGCG CCGACG GGA GCAGAAGGCGTTC GCGCA NAGGNAGCTGC AGCTGCAGAGCTTCCCGACC ATCCTCCTC TTCCCGAGCCGCACC G CGAGGCCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTC GC C TTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCA TTTGTTCTTGGCATCCAA TGGC AATCGAC TTGGCGAC GACCATGATCCGGTGTATT AGTATT AGGGTGAGA TGGGTT AAG TTGGGAAT C GGGGAGGTCAGANGAAGGGGTCGGGGTCAGGGTTCAGAT GCAGTTGCTNCATCTATAGCTTTTGCTGCTACTNCGGG ]
[+] EMBL AU062603 [GTGCCCCTTCTGCCAGGCCATGGAGGCGTCCTACCTGGAGCTCGCCGAGAGN TGGGCGGCGCGGGCGGCGGCGTGAAGGTGGGCAAGTTCCGCG CCGACG GGATGCAGAAGGCGTTC GCGCA NAGG AGCTGC AGCTGCAGAGCTTCCCGACC ATCCTCCTC TTCCCGAGCCGCACC G CGAGGCCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTC GC C TTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAAGCATCATTTTGTTCTTGGCATCCAATTGGCAAATCGACTTTGGCGACGGACCATGATCCCGTGTATTTAAGTATTAAGGGTTANATTGGGTTNAAGTTTGGGAATNCGGGGGAGGTtaaaa ]
[+] EMBL AU100738 [ GCCCCTTCTGCCAGGCCATGGAGNCGTCCTACCTGGAGCTCGCCGAGAGGCTGGGCGGNGCGGGCGGCGGCGTGAAGTTGGGCAAGTTCC CGCCCGACGCCGA GCAGAAGGCGTTC GCGCAGCAGG AGCTGC AGCTGCAGAGCTTCCCGACC ATCCTCCTC TTCCCGAGCCGCACC G CGAGGCCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTC GC C TTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCA TTTGTTCTTGGCATCCAA TGGC AATCGAC TTGGCGAC GACCATGATCCGGTGTATT AGTATT AGGGTGAGA TGGGTT AAG TTGGGAAT C GGGGAGGTCAGAGGAAGGGGTCGGGGTCAGGGTTCAGAT GCAGTTGCTGCATCTATAGCTTTTGCTGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAGGAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAACA GAGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTATGGAGCTTTTTGTCATGTTAAAAAAA ]
[+] EMBL AU108571 [ A GCAGAAGGCGTTC GCGCAGCAGG AGCTGC AGCTGNAGAGCTTCCNGACC ATCCTCCTC TTCCCGAGCCGCACC G CGAGGCCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTC GC C TTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCA TTTGTTCTTGGCATCCAA TGGC AATCGAC TTGGCGAC GACCATGATCCGGTGTATT AGTATT AGGGTGAGA TGGGTT AAG TTGGGAAT C GGGGAGGTCAGAGGAAGGGGTCGGGGTCAGGGTTCAGAT GCAGTTGCTGCATCTATAGCTTTTGCTGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAGGAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAACA GAGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTATGGAGCTTTTTGTCATGTTAAAAAAA ]
[+] EMBL BI809972 [ AAGGCGTTCAGCGCA CAGG AGCTGCAAGCTGCAGAGCTTCCCGACCAATCCTCCTCGTTCCCGAGCCGCACCAGTCGA GCCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTCAGCACATTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCA TTTGTTCTTGGCATCCAA TGGCAAATCGAC TTGGCGAC GACCATGATCCGGTGTATT AGTATT AGGGTGAGA TGGGTT AA TTGGGAAT C GGGGAGGTCAGAGGAA GGGTCGGGGTCAGGGTTCAGATCGCAGTTGCTGCATCTATAGCTTTTGCTGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAGGAAGAGGGTAATTT GGTC TCGTGTGTACTTGTAGCTAGTAATAACACGAGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTATGGAaaaaaaaaa ]
[+] EMBL AU181391 [ CTCCTC TTCCCGAGCCGCACC G CGAGGCCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTC GC C TTCGTCAACAGCCTCCGATNAGGGAGAGACCCGATCGGCACAGCCATCA TTTGTTNTTGGCATCCAA TGGC AATCGAC TTGGCGAC GACCATGATCCGGTGTATT AGTATT AGGGTGANA TGGGTT AAG TTGGGAAT C GGGGAGGTCANAGGAAGGGGTCGGGGTCAGGGTTCANAT GCAGTTGCTGCATCTATAGCTTTTGCTGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAGGAANAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAACA NAGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTATGGAGCTTTTTGTCAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 443 fasta sequence
[AGCTTCCCGACCATCCTCCTCTTCCCGAGCCGCACCGCGAGGCCGATCAAGTACCCGTCGGAGAAGC-GGGACGTCGAC-TC-GCTCCTC-GC-C-TTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCATTTGTTCTTGGCATCCA-ATGGCAATCGACTTGGCGACGACCATGATCCGGTGTATTAGTATTAGGGTGAGATGGGTTAAGTTGGGAATCGGGGAGGTCA-GAGGAAGGGGTCGGGGTCA-GGGTTCAGATGCAG-TTGCTGCATCTATAGCTTTTGCTGCTAC-TGCGGGTTAATCCTGGAAAGCTTCTCTTC-TTTCGGAGGAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAA-CAGAGGATTGTAAGGGTAAATTTAAATAAAAAATTTT-GGTTATGGAGCTAAAAAAAAAAAA]
[+] EMBL AU197649 [AGCTTCCCGACCATCCTCCTCTTCCCGAGCCGCACCGCGAGGCCGATCAAGTACCCGTCGGAGAAGC GGGACGTCGAC TC GCTCCTC GC C TTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCATTTGTTCTTGGCATCCA ATGGCAATCGACTTGGCGACGACCATGATCCGGTGTATTAGTATTAGGGTGAGATGGGTTAAGTTGGGAATCGGGGAGGTCA GAGGAAGGGGTCGGGGTCA GGGTTCAGATGCAG TTGCTGCATCTATAGCTTTTGCTGCTAC TGCGGGTTAATCCTGGAAAGCTTCTCTTC TTTCGGAGGAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAA CAGAGGATTGTAAGGGTAAATTTAAATAAAAAATTTT GGTTATGGAGCTAAAAAAAAAAAA]
[+] EMBL AU197638 [ CCGCTCCGNGAGGCCGATCAAGTACCCGTNGGAGAA C GGGACGTCGAC TC GCTCCTC GC C TTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCATTTGTTCTTGGCATCCA ATGGCAATCGACTTGGCGACGACCATGATCCGGTGTATTAGTATTAGGGTGAGATGGGTTAAGTTGGGAATCGGGGAGGTCA GAGGAAGGGGTCGGGGTCA GGGTTCAGATGCAG TTGCTGCATCTATAGCTTTTGCTGCTAC TNCGGGTTAATCCTGGAAAGCTTCTCTTC TTTCGGAGGAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAA CAGAGGATTGTAAGGGTAAATTTAAATAAAAAATTTT GGTTATGGAGCTAAAAAAAAAAAA]
[+] EMBL BM038586 [ CAAGTACCCCTCGGAGAAGCAGGGACGTCGACATCAGCTCCTCAGCACATTCGTCAACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCATTTGTTCTTGGCATCCACATGGCNATCGACTTGGCGACGACCCTGATCCGGTGTATTAGTATTAGGGTGAGATGGGTTAAGTTGGGAATCGGGGAGGTCACGAGGAAGGGGTCGGGGTCACGGGTTCAGATCCNGCTTGCTGCATCTATAGCNTTTGCTGCTACATGCGGGTTAATCCTGGAAAGCTTCTCTTCATTTCGGAGGAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAACCCGAGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGGTTAaa ]
[+] EMBL AU055827 [ GTCA GGGTTCAGATGCAG TTGCTGCNTCTATAGCTTTTGCTGCTAC TGCGGGTTAATCCTGGAAAGCTTCTCTTC TTTCGGAGGAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAATAA CAGAGGATTGTAAGGGTAAATTTAAATAAAANATTTT GGTTAaaaaaa ]
consensusID : consensus_13152#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[TTGGCATCACCATGGCACATCGACTTGGCAGACGACCCCTGATCCGGTGTATTAGTATTAGGGTGAGATGGGTTAAGTTGGGAATCGGGGAGTTCAGAGGAAGGGTCAGGGATCCAGGGTTCAANATCCCATTGCTGCATCTATAGCTTTTGCATGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAGGAAGAGGGTAATTTGGGTCATCAGTGTGTACATTGTAGCTAGTNATNCACANGAGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTAA]
[+] EMBL BM421682 [TTGGCATCACCATGGCACATCGACTTGGCAGACGACCCCTGATCCGGTGTATTAGTATTAGGGTGAGATGGGTTAAGTTGGGAATCGGGGAGTTCAGAGGAAGGGTCAGGGATCCAGGGTTCAANATCCCATTGCTGCATCTATAGCTTTTGCATGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAGGAAGAGGGTAATTTGGGTCATCAGTGTGTACATTGTAGCTAGTNATNCACANGAGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTAA]
consensusID : consensus_13152#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence
[ACAGCCTCCGATGAGGGAGAGACCCAGATCGGCACAACCATCATTTGTTCTTGCCATCCAATGCCAATCAGACTTGCAGACGCACCATGATCCGGTGGTATTAGTATTAGGTTGAGAATGGTTTAATTGGGAATCGGGGAGTTCAGAGGAAAGGGTTCGGGTTCCAGGTTTCAAGATCAGTTGCTGGCAATCTATAAGCTTTTGGCTGCTACTGCCGGGTTAATC]
[+] EMBL BI808288 [ACAGCCTCCGATGAGGGAGAGACCCAGATCGGCACAACCATCATTTGTTCTTGCCATCCAATGCCAATCAGACTTGCAGACGCACCATGATCCGGTGGTATTAGTATTAGGTTGAGAATGGTTTAATTGGGAATCGGGGAGTTCAGAGGAAAGGGTTCGGGTTCCAGGTTTCAAGATCAGTTGCTGGCAATCTATAAGCTTTTGGCTGCTACTGCCGGGTTAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13152#0 GTGCCCCTTCTGCCAGGCCATGGAGGCGTCCTACCTGGAGCTCGCCGAGAGGTGGGCGGC 60
consensus_13152#2 ------------------------------------------------------------
consensus_13152#1 ------------------------------------------------------------
consensus_13152#3 ------------------------------------------------------------
consensus_13152#0 GCGGGCGGCGGCGTGAAGGTGGGCAAGTTCCCGCCGACGGGAGCAGAAGGCGTTCGCGCA 120
consensus_13152#2 ------------------------------------------------------------
consensus_13152#1 ------------------------------------------------------------
consensus_13152#3 ------------------------------------------------------------
consensus_13152#0 CAGGAGCTGCAGCTGCAGAGCTTCCCGACCATCCTCCTCTTCCCGAGCCGCACCGCGAGG 180
consensus_13152#2 ------------------------------------------------------------
consensus_13152#1 ------------------AGCTTCCCGACCATCCTCCTCTTCCCGAGCCGCACCGCGAGG 42
consensus_13152#3 ------------------------------------------------------------
consensus_13152#0 CCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTCGCCTTCGTCAACAGC 240
consensus_13152#2 ------------------------------------------------------------
consensus_13152#1 CCGATCAAGTACCCGTCGGAGAAGCGGGACGTCGACTCGCTCCTCGCCTTCGTCAACAGC 102
consensus_13152#3 ------------------------------------------------------ACAGCC 6
consensus_13152#0 CTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCATTTGTTCTTGGCATC-CAATGGC 299
consensus_13152#2 --------------------------------------------TTGGCATCACCATGGC 16
consensus_13152#1 CTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCATTTGTTCTTGGCATC-CAATGGC 161
consensus_13152#3 TCCGATGAGGGAGAGACCCAGATCGGCACAACCATCATTTGTTCTTGCCATC-CAATGCC 65
*** **** * *** *
consensus_13152#0 A-ATCGACTTGGC-GACGACCA-TGATCCGGTG-TATTAGTATTAGGGTGAGATGGGTTA 355
consensus_13152#2 ACATCGACTTGGCAGACGACCCCTGATCCGGTG-TATTAGTATTAGGGTGAGATGGGTTA 75
consensus_13152#1 A-ATCGACTTGGC-GACGACCA-TGATCCGGTG-TATTAGTATTAGGGTGAGATGGGTTA 217
consensus_13152#3 A-ATCAGACTTGCAGACGCACCATGATCCGGTGGTATTAGTATTAGGTTGAGAATGGTTT 124
* *** * ** **** * ********** ************* ***** ****
consensus_13152#0 AGTTGGGAATCGGGGAGGTCAGAGGAA-GGGGTCGGGGTC-AGGGTTCA-GATGCAGTTG 412
consensus_13152#2 AGTTGGGAATCGGGGAGTTCAGAGGAA-GGGTCAGGGATCCAGGGTTCAANATCCCATTG 134
consensus_13152#1 AGTTGGGAATCGGGGAGGTCAGAGGAA-GGGGTCGGGGTC-AGGGTTCA-GATGCAGTTG 274
consensus_13152#3 AATTGGGAATCGGGGAGTTCAGAGGAAAGGGTTCGGGTTCCAGGTTTCAAGAT-CAGTTG 183
* *************** ********* *** *** ** *** **** ** * ***
consensus_13152#0 CTGC--ATCTATA-GCTTTTGC-TGCTACTGC-GGGTTAATCCTGGAAAGCTTCTCTTCT 467
consensus_13152#2 CTGC--ATCTATA-GCTTTTGCATGCTACTGC-GGGTTAATCCTGGAAAGCTTCTCTTCT 190
consensus_13152#1 CTGC--ATCTATA-GCTTTTGC-TGCTACTGC-GGGTTAATCCTGGAAAGCTTCTCTTCT 329
consensus_13152#3 CTGGCAATCTATAAGCTTTTGGCTGCTACTGCCGGGTTAATC------------------ 225
*** ******* ******* ********* *********
consensus_13152#0 TTCGGAGGAAGAGGGTAATTTGGGTCGTC-GTGTGTAC-TTGTAGCTAGTAATA-ACAG- 523
consensus_13152#2 TTCGGAGGAAGAGGGTAATTTGGGTCATCAGTGTGTACATTGTAGCTAGTNATNCACANG 250
consensus_13152#1 TTCGGAGGAAGAGGGTAATTTGGGTCGTC-GTGTGTAC-TTGTAGCTAGTAATA-ACAG- 385
consensus_13152#3 ------------------------------------------------------------
consensus_13152#0 AGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTATGGAGCTTTTTGTCATGTTAA 583
consensus_13152#2 AGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTAA-------------------- 290
consensus_13152#1 AGGATTGTAAGGGTAAATTTAAATAAAAAATTTTGGTTATGGAGCTAAAAAAAAAAAA-- 443
consensus_13152#3 ------------------------------------------------------------
consensus_13152#0 AAAAAAAAAAAA 595
consensus_13152#2 ------------
consensus_13152#1 ------------
consensus_13152#3 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||