These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCTCAGTAAAGGGAATAAGTGAGGGCGTGAAGATGTCGACGTTGCTCCGCACGAACTAGTCGGGGGCGGCACGCCATGAGGCCGACCCACGCCTGCAGGTTCGTGATGAGGATGTCTGTTGCCGGGCGACGTGTACAGCTCCACGCCGAGCGTCGTGTCGGTGCCGGCCTTCCAGATCGAGCCCGACTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGATCTCCTCGCGATCCGTAGCTCCGGCGGCACTGCGCATTCAAGGATTACTAGTATGGTGAAGGCTGATCACCGAGATGGAGCATCATAAGTCGAGACTCATAGAAAGTGTAGAACGAGGTACCAAATGCCGCCAGGGATAATGAGTGCCGTTAGAGCAGAGGATGCTTATGCGCCTATTGTTGAGAGGCTTGAAGAATGCAGACGTGTGTCGGATGCTTTATCGTGCACATTTTGGGACTGTGATGTGTACCAGACGATGAGTCTACTTAAGCGTGGGTAATGAGGCTTCTGATAGACGGAGACAAAACGGCATAGGGGAACTGGCACACATGCTACCGTCATACGATTAAATGATTACTGCAGTGTTATGTTGAGATGAATGTGTCGATATTATGCTTCGATTATACACCCGTTGAATCTTGGCT] [+] EMBL BU673440 [CCTCAGTAAAGGGAATAAGTGAGGGCGTGAAGATGTCGACGTTGCTCCGCACGAACTAGTCGGGGGCGGCACGCCATGAGGCCGACCCACGCCTGCAGGTTCGTGATGAGGATGTCTGTTGCCGGGCGACGTGTACAGCTCCACGCCGAGCGTCGTGTCGGTGCCGGCCTTCCAGATCGAGCCCGACTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGATCTCCTCGCGATCCGTAGCTCCGGCGGCACTGCGCATTCAAGGATTACTAGTATGGTGAAGGCTGATCACCGAGATGGAGCATCATAAGTCGAGACTCATAGAAAGTGTAGAACGAGGTACCAAATGCCGCCAGGGATAATGAGTGCCGTTAGAGCAGAGGATGCTTATGCGCCTATTGTTGAGAGGCTTGAAGAATGCAGACGTGTGTCGGATGCTTTATCGTGCACATTTTGGGACTGTGATGTGTACCAGACGATGAGTCTACTTAAGCGTGGGTAATGAGGCTTCTGATAGACGGAGACAAAACGGCATAGGGGAACTGGCACACATGCTACCGTCATACGATTAAATGATTACTGCAGTGTTATGTTGAGATGAATGTGTCGATATTATGCTTCGATTATACACCCGTTGAATCTTGGCT] consensusID : consensus_13155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 642 fasta sequence [GGGAATAGCTGCGGTCG-TGAAGATGTCGACGTTGCTCCGC-TCGAAGTAGTCGTGG-C--GGCCGCCATGAGGCCG-CCCACGCCTGCAGGTTCCTGATGAGGATGCC-GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA-TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG-CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC-TTAAGC-TGGC-TAATGAGGCTTC-TTATAGA-CGGAGACAAAACGGA-TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT-TTTTTATGCTTTGATTAGACAACAAGTTGAATTCAGCCGCGAGGCCAAAT] [+] EMBL CB967429 [GGGAATACTTGCGGTGC TGAAGATGTCGACGTTGCTCCGC TCTAAGTAGTCGTGG C GGCCG CATGAGGCCG CCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAACTGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGACTGTGTCGT AATCTATGCTTTGATTAGACA ] [+] EMBL BU673470 [ GGAATAGCTTCGGCCGCTGAAGATGTCGACGTTGCTCCGC TCTAAGTAGTCGTGG CCTGGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGGGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG GCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTGGAAGGCTTGAAGACGCAGACTGTCTCGAGCTTTATCTGCACTTTCGGGATGTGATGTGTACCGACGATGATCTAC TTACGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTACCTGAT ] [+] EMBL BU673596 [ CTGCGGTCG TGAAGATGTCGACGTTGCTCCG TCGAAGTAGTCGTGG C GGCCG CATGAGGCCG CCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAG ] [+] EMBL BU673123 [ aagttGGGCG TG ATATGTCGACGTTGCTCCGC TCGAAGTAGTCGTGG C GGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGACATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTATGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAACACGGA TAGGGGAACTGGAAATGCTACCGTATAAAATTAACTGATTAATGCACTGTATACTTTACATGAATGTGTCGT TCTTTATGCTTTGATTAcg ] [+] EMBL CB966131 [ GAAGATGTCGACGTTGCTCCGCGTCGAAGTAGTCGTGGCC GGCCGCCATGAGGCCG CCCACGCCTGCAGGTTCCTGATGAGGATGCCAGTTGCCGGCCGACGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATAGTGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAGCCCGCCATGGAAATGAGTGCCGTAGAGCGGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACGAAACGGACTCGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTGAGATGAATGTGTCGC CTCTTATGCTTTGATTAG ] [+] EMBL CB966222 [ ATGTCGA GTTGCTCCGC TCGAAGTAGTCGTGG C GGCCG CATGAGGCCG CCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGGCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAG ] [+] EMBL CB967393 [ GTCGACGTTGCTCCGC TCTAAGTAGTCGTGGCC GGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAG ] [+] EMBL CB965799 [ GACGTTGCTCCGC TCGAAGTAGTCGTGGCC GGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGTATAATAATGCTTTGATTAG ] [-] EMBL BU673902 [ aATGTGATGTGTACCGACGATGATCTACGTTAAGCGTGGCTTAATGAGGCTTCTTTATAGACCGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAGACAACAAGTTGAATTCAGCCGCGAGGCCAAAT] [-] EMBL BU673876 [ GAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGC CTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAGACCACAg ] consensusID : consensus_13155#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [GACGTTGCTCCGCTCGAAGTAGTCGTGGCCGGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCCGTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATATGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAGCCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGATTGAAGAAGCAGACTGTCTCGAGCTTTATCTGCACATAAAGGGATGTGATGTGTAACGAAGATGATCTAATAAGAAGGAATAAAGAGAAAAAAAAAGACA] [+] EMBL CB965426 [GACGTTGCTCCGCTCGAAGTAGTCGTGGCCGGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCCGTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATATGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAGCCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGATTGAAGAAGCAGACTGTCTCGAGCTTTATCTGCACATAAAGGGATGTGATGTGTAACGAAGATGATCTAATAAGAAGGAATAAAGAGAAAAAAAAAGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13155#1 ----------GGGAATAGCTGCGGTCGTGAAGATGTCGACGTTGCTCCGCTCGAAGTAGT 50 consensus_13155#2 -------------------------------------GACGTTGCTCCGCTCGAAGTAGT 23 consensus_13155#0 CCTCAGTAAAGGGAATAAGTGAGGGCGTGAAGATGTCGACGTTGCTCCGCACGAACTAGT 60 ************* **** **** consensus_13155#1 CGTGGC-GGC-CGCCATGAGGCCGCCC-ACGCCTGCAGGTTCCTGATGAGGATGCC-GTT 106 consensus_13155#2 CGTGGCCGGC-CGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC-GTT 81 consensus_13155#0 CGGGGGCGGCACGCCATGAGGCCGACCCACGCCTGCAGGTTCGTGATGAGGATGTCTGTT 120 ** ** *** ************* ** ************** *********** * *** consensus_13155#1 GCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGA 166 consensus_13155#2 GCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGA 141 consensus_13155#0 GCCGGGCGACGTGTACAGCTCCACGCCGAGCGTCGTGTCGGTGCCGGCCTTCCAGATCGA 180 ***** ** ****** ************* ** ** ************************ consensus_13155#1 GCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAG 226 consensus_13155#2 GCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAG 201 consensus_13155#0 GCCCGACTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAG 240 ***** ****************************************************** consensus_13155#1 CAGCGCGCCCGTGTCCTCCTC-CGA--CGTTGCTCCGGCGGC-CTGCGCATTCAAGG-TT 281 consensus_13155#2 CAGCGCGCCCGTGTCCTCCTC-CGA--CGTTGCTCCGGCGGC-CTGCGCATTCAAGG-TT 256 consensus_13155#0 CAGCGCGCCCGTGATCTCCTCGCGATCCGTAGCTCCGGCGGCACTGCGCATTCAAGGATT 300 ************* ****** *** *** *********** ************** ** consensus_13155#1 AT--ATATGGTGAAG-CTGATCAC-GAGATGGAC--TCATAAG-CGAGACTCA--GAAAA 332 consensus_13155#2 AT--ATATGGTGAAG-CTGATCAC-GAGATGGAC--TCATAAG-CGAGACTCA--GAAAA 307 consensus_13155#0 ACTAGTATGGTGAAGGCTGATCACCGAGATGGAGCATCATAAGTCGAGACTCATAGAAAG 360 * ********** ******** ******** ******* ********* **** consensus_13155#1 TGTAGAAC-ACGTACCAAA-GCCGCCATGGA-AATGAGTGCCGT-AAAGCAGAGGA-GCT 387 consensus_13155#2 TGTAGAAC-ACGTACCAAA-GCCGCCATGGA-AATGAGTGCCGT-AAAGCAGAGGA-GCT 362 consensus_13155#0 TGTAGAACGAGGTACCAAATGCCGCCAGGGATAATGAGTGCCGTTAGAGCAGAGGATGCT 420 ******** * ******** ******* *** ************ * ********* *** consensus_13155#1 TATGCGCC-ATTGTTGA-AGGCTTGAAGAA-GCAGAC-TGTCTCGA--CCTTTATC-TGC 440 consensus_13155#2 TATGCGCC-ATTGTTGA-AGGATTGAAGAA-GCAGAC-TGTCTCGA--GCTTTATC-TGC 415 consensus_13155#0 TATGCGCCTATTGTTGAGAGGCTTGAAGAATGCAGACGTGTGTCGGATGCTTTATCGTGC 480 ******** ******** *** ******** ****** *** *** ******* *** consensus_13155#1 ACTTTT-GGGA-TGTGATGTGTACC-GACGATGA-TCTACTTAAGCT-GGCTAATGAGGC 495 consensus_13155#2 ACATAAAGGGA-TGTGATGTGTAAC-GAAGATGA-TCTAATAAGAAG-GAATAAAGAG-- 469 consensus_13155#0 ACATTTTGGGACTGTGATGTGTACCAGACGATGAGTCTACTTAAGCGTGGGTAATGAGGC 540 ** * **** *********** * ** ***** **** * * * *** *** consensus_13155#1 TTCTTATAGACGGAGACAAAACGG-ATAGGGGAACTGGAA---ATGCTACCGT-ATAAGA 550 consensus_13155#2 -----AAAAAAAAAGACA------------------------------------------ 482 consensus_13155#0 TTCTGATAGACGGAGACAAAACGGCATAGGGGAACTGGCACACATGCTACCGTCATACGA 600 * * * ***** consensus_13155#1 TTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGTTTTTTATGCTTTGATTAG 610 consensus_13155#2 ------------------------------------------------------------ consensus_13155#0 TTAAATGATTACTGCAGTGTTATGTTGAGATGAATGTGTCGATATT-ATGCTTCGATTAT 659 consensus_13155#1 ACAACAAGTTGAATTCAGCCGCGAGGCCAAAT 642 consensus_13155#2 -------------------------------- consensus_13155#0 ACACCCGTTGAATCTTGGCT------------ 679 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||