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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCTCAGTAAAGGGAATAAGTGAGGGCGTGAAGATGTCGACGTTGCTCCGCACGAACTAGTCGGGGGCGGCACGCCATGAGGCCGACCCACGCCTGCAGGTTCGTGATGAGGATGTCTGTTGCCGGGCGACGTGTACAGCTCCACGCCGAGCGTCGTGTCGGTGCCGGCCTTCCAGATCGAGCCCGACTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGATCTCCTCGCGATCCGTAGCTCCGGCGGCACTGCGCATTCAAGGATTACTAGTATGGTGAAGGCTGATCACCGAGATGGAGCATCATAAGTCGAGACTCATAGAAAGTGTAGAACGAGGTACCAAATGCCGCCAGGGATAATGAGTGCCGTTAGAGCAGAGGATGCTTATGCGCCTATTGTTGAGAGGCTTGAAGAATGCAGACGTGTGTCGGATGCTTTATCGTGCACATTTTGGGACTGTGATGTGTACCAGACGATGAGTCTACTTAAGCGTGGGTAATGAGGCTTCTGATAGACGGAGACAAAACGGCATAGGGGAACTGGCACACATGCTACCGTCATACGATTAAATGATTACTGCAGTGTTATGTTGAGATGAATGTGTCGATATTATGCTTCGATTATACACCCGTTGAATCTTGGCT]
[+] EMBL BU673440 [CCTCAGTAAAGGGAATAAGTGAGGGCGTGAAGATGTCGACGTTGCTCCGCACGAACTAGTCGGGGGCGGCACGCCATGAGGCCGACCCACGCCTGCAGGTTCGTGATGAGGATGTCTGTTGCCGGGCGACGTGTACAGCTCCACGCCGAGCGTCGTGTCGGTGCCGGCCTTCCAGATCGAGCCCGACTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGATCTCCTCGCGATCCGTAGCTCCGGCGGCACTGCGCATTCAAGGATTACTAGTATGGTGAAGGCTGATCACCGAGATGGAGCATCATAAGTCGAGACTCATAGAAAGTGTAGAACGAGGTACCAAATGCCGCCAGGGATAATGAGTGCCGTTAGAGCAGAGGATGCTTATGCGCCTATTGTTGAGAGGCTTGAAGAATGCAGACGTGTGTCGGATGCTTTATCGTGCACATTTTGGGACTGTGATGTGTACCAGACGATGAGTCTACTTAAGCGTGGGTAATGAGGCTTCTGATAGACGGAGACAAAACGGCATAGGGGAACTGGCACACATGCTACCGTCATACGATTAAATGATTACTGCAGTGTTATGTTGAGATGAATGTGTCGATATTATGCTTCGATTATACACCCGTTGAATCTTGGCT]
consensusID : consensus_13155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 642 fasta sequence
[GGGAATAGCTGCGGTCG-TGAAGATGTCGACGTTGCTCCGC-TCGAAGTAGTCGTGG-C--GGCCGCCATGAGGCCG-CCCACGCCTGCAGGTTCCTGATGAGGATGCC-GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA-TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG-CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC-TTAAGC-TGGC-TAATGAGGCTTC-TTATAGA-CGGAGACAAAACGGA-TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT-TTTTTATGCTTTGATTAGACAACAAGTTGAATTCAGCCGCGAGGCCAAAT]
[+] EMBL CB967429 [GGGAATACTTGCGGTGC TGAAGATGTCGACGTTGCTCCGC TCTAAGTAGTCGTGG C GGCCG CATGAGGCCG CCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAACTGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGACTGTGTCGT AATCTATGCTTTGATTAGACA ]
[+] EMBL BU673470 [ GGAATAGCTTCGGCCGCTGAAGATGTCGACGTTGCTCCGC TCTAAGTAGTCGTGG CCTGGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGGGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG GCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTGGAAGGCTTGAAGACGCAGACTGTCTCGAGCTTTATCTGCACTTTCGGGATGTGATGTGTACCGACGATGATCTAC TTACGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTACCTGAT ]
[+] EMBL BU673596 [ CTGCGGTCG TGAAGATGTCGACGTTGCTCCG TCGAAGTAGTCGTGG C GGCCG CATGAGGCCG CCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAG ]
[+] EMBL BU673123 [ aagttGGGCG TG ATATGTCGACGTTGCTCCGC TCGAAGTAGTCGTGG C GGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGACATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTATGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAACACGGA TAGGGGAACTGGAAATGCTACCGTATAAAATTAACTGATTAATGCACTGTATACTTTACATGAATGTGTCGT TCTTTATGCTTTGATTAcg ]
[+] EMBL CB966131 [ GAAGATGTCGACGTTGCTCCGCGTCGAAGTAGTCGTGGCC GGCCGCCATGAGGCCG CCCACGCCTGCAGGTTCCTGATGAGGATGCCAGTTGCCGGCCGACGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATAGTGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAGCCCGCCATGGAAATGAGTGCCGTAGAGCGGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACGAAACGGACTCGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTGAGATGAATGTGTCGC CTCTTATGCTTTGATTAG ]
[+] EMBL CB966222 [ ATGTCGA GTTGCTCCGC TCGAAGTAGTCGTGG C GGCCG CATGAGGCCG CCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGGCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAG ]
[+] EMBL CB967393 [ GTCGACGTTGCTCCGC TCTAAGTAGTCGTGGCC GGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAG ]
[+] EMBL CB965799 [ GACGTTGCTCCGC TCGAAGTAGTCGTGGCC GGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC GTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATA TGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAG CCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGCTTGAAGAAGCAGACTGTCTCGACCTTTATCTGCACTTTTGGGATGTGATGTGTACCGACGATGATCTAC TTAAGC TGGC TAATGAGGCTTC TTATAGA CGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGTATAATAATGCTTTGATTAG ]
[-] EMBL BU673902 [ aATGTGATGTGTACCGACGATGATCTACGTTAAGCGTGGCTTAATGAGGCTTCTTTATAGACCGGAGACAAAACGGA TAGGGGAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAGACAACAAGTTGAATTCAGCCGCGAGGCCAAAT]
[-] EMBL BU673876 [ GAACTGGAAATGCTACCGTATAAGATTAAATGATTAATGC CTGTTTTCTTTAGATGAATGTGTCGT TTTTTATGCTTTGATTAGACCACAg ]
consensusID : consensus_13155#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[GACGTTGCTCCGCTCGAAGTAGTCGTGGCCGGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCCGTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATATGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAGCCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGATTGAAGAAGCAGACTGTCTCGAGCTTTATCTGCACATAAAGGGATGTGATGTGTAACGAAGATGATCTAATAAGAAGGAATAAAGAGAAAAAAAAAGACA]
[+] EMBL CB965426 [GACGTTGCTCCGCTCGAAGTAGTCGTGGCCGGCCGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCCGTTGCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGAGCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAGCAGCGCGCCCGTGTCCTCCTCCGACGTTGCTCCGGCGGCCTGCGCATTCAAGGTTATATATGGTGAAGCTGATCACGAGATGGACTCATAAGCGAGACTCAGAAAATGTAGAACACGTACCAAAGCCGCCATGGAAATGAGTGCCGTAAAGCAGAGGAGCTTATGCGCCATTGTTGAAGGATTGAAGAAGCAGACTGTCTCGAGCTTTATCTGCACATAAAGGGATGTGATGTGTAACGAAGATGATCTAATAAGAAGGAATAAAGAGAAAAAAAAAGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13155#1 ----------GGGAATAGCTGCGGTCGTGAAGATGTCGACGTTGCTCCGCTCGAAGTAGT 50
consensus_13155#2 -------------------------------------GACGTTGCTCCGCTCGAAGTAGT 23
consensus_13155#0 CCTCAGTAAAGGGAATAAGTGAGGGCGTGAAGATGTCGACGTTGCTCCGCACGAACTAGT 60
************* **** ****
consensus_13155#1 CGTGGC-GGC-CGCCATGAGGCCGCCC-ACGCCTGCAGGTTCCTGATGAGGATGCC-GTT 106
consensus_13155#2 CGTGGCCGGC-CGCCATGAGGCCGCCCCACGCCTGCAGGTTCCTGATGAGGATGCC-GTT 81
consensus_13155#0 CGGGGGCGGCACGCCATGAGGCCGACCCACGCCTGCAGGTTCGTGATGAGGATGTCTGTT 120
** ** *** ************* ** ************** *********** * ***
consensus_13155#1 GCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGA 166
consensus_13155#2 GCCGGCCGCCGTGTAGAGCTCCACGCCGACCGCCGCGTCGGTGCCGGCCTTCCAGATCGA 141
consensus_13155#0 GCCGGGCGACGTGTACAGCTCCACGCCGAGCGTCGTGTCGGTGCCGGCCTTCCAGATCGA 180
***** ** ****** ************* ** ** ************************
consensus_13155#1 GCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAG 226
consensus_13155#2 GCCCGTCTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAG 201
consensus_13155#0 GCCCGACTCCACGTAGAGCGTGTACACGCACTGGTTCGACCCCGTCGAGCCCGGGAGCAG 240
***** ******************************************************
consensus_13155#1 CAGCGCGCCCGTGTCCTCCTC-CGA--CGTTGCTCCGGCGGC-CTGCGCATTCAAGG-TT 281
consensus_13155#2 CAGCGCGCCCGTGTCCTCCTC-CGA--CGTTGCTCCGGCGGC-CTGCGCATTCAAGG-TT 256
consensus_13155#0 CAGCGCGCCCGTGATCTCCTCGCGATCCGTAGCTCCGGCGGCACTGCGCATTCAAGGATT 300
************* ****** *** *** *********** ************** **
consensus_13155#1 AT--ATATGGTGAAG-CTGATCAC-GAGATGGAC--TCATAAG-CGAGACTCA--GAAAA 332
consensus_13155#2 AT--ATATGGTGAAG-CTGATCAC-GAGATGGAC--TCATAAG-CGAGACTCA--GAAAA 307
consensus_13155#0 ACTAGTATGGTGAAGGCTGATCACCGAGATGGAGCATCATAAGTCGAGACTCATAGAAAG 360
* ********** ******** ******** ******* ********* ****
consensus_13155#1 TGTAGAAC-ACGTACCAAA-GCCGCCATGGA-AATGAGTGCCGT-AAAGCAGAGGA-GCT 387
consensus_13155#2 TGTAGAAC-ACGTACCAAA-GCCGCCATGGA-AATGAGTGCCGT-AAAGCAGAGGA-GCT 362
consensus_13155#0 TGTAGAACGAGGTACCAAATGCCGCCAGGGATAATGAGTGCCGTTAGAGCAGAGGATGCT 420
******** * ******** ******* *** ************ * ********* ***
consensus_13155#1 TATGCGCC-ATTGTTGA-AGGCTTGAAGAA-GCAGAC-TGTCTCGA--CCTTTATC-TGC 440
consensus_13155#2 TATGCGCC-ATTGTTGA-AGGATTGAAGAA-GCAGAC-TGTCTCGA--GCTTTATC-TGC 415
consensus_13155#0 TATGCGCCTATTGTTGAGAGGCTTGAAGAATGCAGACGTGTGTCGGATGCTTTATCGTGC 480
******** ******** *** ******** ****** *** *** ******* ***
consensus_13155#1 ACTTTT-GGGA-TGTGATGTGTACC-GACGATGA-TCTACTTAAGCT-GGCTAATGAGGC 495
consensus_13155#2 ACATAAAGGGA-TGTGATGTGTAAC-GAAGATGA-TCTAATAAGAAG-GAATAAAGAG-- 469
consensus_13155#0 ACATTTTGGGACTGTGATGTGTACCAGACGATGAGTCTACTTAAGCGTGGGTAATGAGGC 540
** * **** *********** * ** ***** **** * * * *** ***
consensus_13155#1 TTCTTATAGACGGAGACAAAACGG-ATAGGGGAACTGGAA---ATGCTACCGT-ATAAGA 550
consensus_13155#2 -----AAAAAAAAAGACA------------------------------------------ 482
consensus_13155#0 TTCTGATAGACGGAGACAAAACGGCATAGGGGAACTGGCACACATGCTACCGTCATACGA 600
* * * *****
consensus_13155#1 TTAAATGATTAATGCACTGTTTTCTTTAGATGAATGTGTCGTTTTTTATGCTTTGATTAG 610
consensus_13155#2 ------------------------------------------------------------
consensus_13155#0 TTAAATGATTACTGCAGTGTTATGTTGAGATGAATGTGTCGATATT-ATGCTTCGATTAT 659
consensus_13155#1 ACAACAAGTTGAATTCAGCCGCGAGGCCAAAT 642
consensus_13155#2 --------------------------------
consensus_13155#0 ACACCCGTTGAATCTTGGCT------------ 679
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||