These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2537 fasta sequence [TGTTGACTGAGGAGGGAGAAGCTGGG-AGCGGCATCGGCAGAGGCGACACCAGCGTGCCTCCACATCGGCTTCGTCTCCGGCGCCGGCCCCCGCCCCTGCCACTCCCCCACCTCGTCCTCCCCCAGTCAGCGCCGCCGCCCCCATCCGCCTCCGCCACCGCCCCCATCCGCCGCCACCCCCACCCCTATCCGCCGCCCCCATCCACCGCTGCCCCTCGGTCAGCTCCTCCCGCCCTCCACTCCCTCCTCCCCTCCCTCAATGTGTGGTTAGGGTTTGGCTCCATGGATGACTCCACCTGGCTACAGATTGTTGGGAGGTGACAAAGTTTACTAATCATCACACGTGTACATCTAGCGGTAGAAGGAAGACTACCACACCAACC-AGCGCCTGGGTTGCTTCCAAGGCCATCCATATCCTTGGGAC-AGATTCAGGTA-TGGGCCCTAAAGAACTGC-AAAAAGGTTGCAAGAGGATCAGAAATGCAAAATCAATTATGATACTGTGGCTAAGGGTAGGAGTTTGGCTATGATCCAATTGCATGGTAGTTGGGAAGAGAATTTCCATATGTTGTATAGGTGGAGGGCTGCAGTCATGGAGAGGTCCCCAGGTAGTGTTATTGAGATTGACACTGTTGAGGTTGATGGGAAGGTTTATTTTAACAGATTCTTTTGTGCATTTAGTCCATGCATTACTGGATTTCTAACTGGATGTAGGCCATACCTTAGTGTAGACTCAACTGCCCTAAATGGTTTGTGGAAAGGACATTTAGCATCTGCCATAGCTATAGATGGAAACAACTGGATGTACCCTCTTGCTTTTGGTTTCTTTGATGCTGAGACTACTGATAATTGGACCTGGTTTATGATTCAATTGCTTAAGGCCATAGGAAAAGTATCTCCTCTTGCAATTTGTACTGATGCATGCAAAGGACTAGAGATTGCAGTGCACCGAGTTTTCCCTTGGGCTGAACATAGAGAATGTTTTAACCACCTTATGCAAAATCTAATCAAGAAATATGGTGGATCTGTCTTCCAAGAGATGTATCCTGCAGCTAGATCATATAGGGCACAAGTGCACGAGGAGTGTATGGATACAATTAAGAAAGCATGCACTGATGTGGCTCTCTGGCTTGACACTTGCCATAAATTGATATGGTACAGGAGTGGCTTCAATGCTGAAATTAAATGTGATTATGTCACTAACAATCTTGCAGAGTGCTTTAACAATTGGATCAGAGATATAAAGGCCTTACCTATTTGTGAGCTTGCTGACACATGTAGGGAGATGATAATGACCCTGTGGAATAGGAGGAGAAGGATTGGAAATAAATTCACAGGTACAATTCTACCTGCTAATTTGCACCAGTTGAGAGCTAGGACTCGAGGGTTAGGCCACTTGTCAGTTGTGCATGCTGACATAACCACTGCTGAGGTTTGGGACAATAGTAGCAGCCATGCTAGGCATGTTGTGAGGACACATGAGCAGTCTTGTACATGTCAGGAGTGGCAACACACTGGCAAGCCTTGCCGACATGCCTTGGCAGTGATTACCTCCTAGCAAATTAGGGATGTAAAGTTGGAGAAGTACATTAATCCCTACTACTCTGTGGCCCTATTCTGGAATGCATACAACTCAATTATTGAGCCACTCCCTGACAAATCACAATGGCCTAAGGTGGATTTACCTTTTGTTCTTGGTGCACCCCTTGCAAAAAGGAACCTAGGAAGGTACAGGAAACTAAGGATCAAGGGTTGCTTGAAAGGTGGTGGTAGCAAGCCTAAAGACAATGCCAAAGAGAAGGCAACGATTAGAGGAAAAAGGTGTAAAAAATGTGGTGAGTTGGGTCATGGACAAACTAGCTACAAGTGTAAGCTCAATGGTACAAAGAAGAAGCCGAAACGAAAGGCAAGATGGAACACAACGAGGTATGGGCCGGCTCCTGCTCCTAATGCTCCTGATGTGGTTTATGCCCCTGCTCCTGATGCTTATGCTGCTCCTGCTGCTCATGCTGCTCCTATACCATATACCCCAACTAGGCCTACTGTAGAAACCATTATTCAAGAAAGCCCAACAATTGTGACAAGACGCCGGCTTGCAATGTTAATGGAACAAGGAGGGACAAGCTCACAACCGGCACTTGCTTCACAAGTGACATGTAAAAGGAGGGTGAATATTGCTGAATCAAGCTCACAGCCGGCTCCATCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATGAAGCCTACTTGAATAGCTCCTCCTGTATCACAACTAATATTGTGTGCTGTGCATGTGAGGCACAATTATAGGAGGTATTTTGTGAACCATGGTGCATGTGAACCATGTTGGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATGTGAGGTCTTTTGTGAACCATGGTGCATATGAACCACTACTATGTTGTGAACCATGGTGCATGTGAACCACTGTTATGTTGTGAACCATTGTTATGTGAGGTATTTTGTGAACCACATGCTATTCAATATTATGTCATA] [+] EMBL AK073736 [TGTTGACTGAGGAGGGAGAAGCTGGG AGCGGCATCGGCAGAGGCGACACCAGCGTGCCTCCACATCGGCTTCGTCTCCGGCGCCGGCCCCCGCCCCTGCCACTCCCCCACCTCGTCCTCCCCCAGTCAGCGCCGCCGCCCCCATCCGCCTCCGCCACCGCCCCCATCCGCCGCCACCCCCACCCCTATCCGCCGCCCCCATCCACCGCTGCCCCTCGGTCAGCTCCTCCCGCCCTCCACTCCCTCCTCCCCTCCCTCAATGTGTGGTTAGGGTTTGGCTCCATGGATGACTCCACCTGGCTACAGATTGTTGGGAGGTGACAAAGTTTACTAATCATCACACGTGTACATCTAGCGGTAGAAGGAAGACTACCACACCAACC AGCGCCTGGGTTGCTTCCAAGGCCATCCATATCCTTGGGAC AGATTCAGGTA TGGGCCCTAAAGAACTGC AAAAAGGTTGCAAGAGGATCAGAAATGCAAAATCAATTATGATACTGTGGCTAAGGGTAGGAGTTTGGCTATGATCCAATTGCATGGTAGTTGGGAAGAGAATTTCCATATGTTGTATAGGTGGAGGGCTGCAGTCATGGAGAGGTCCCCAGGTAGTGTTATTGAGATTGACACTGTTGAGGTTGATGGGAAGGTTTATTTTAACAGATTCTTTTGTGCATTTAGTCCATGCATTACTGGATTTCTAACTGGATGTAGGCCATACCTTAGTGTAGACTCAACTGCCCTAAATGGTTTGTGGAAAGGACATTTAGCATCTGCCATAGCTATAGATGGAAACAACTGGATGTACCCTCTTGCTTTTGGTTTCTTTGATGCTGAGACTACTGATAATTGGACCTGGTTTATGATTCAATTGCTTAAGGCCATAGGAAAAGTATCTCCTCTTGCAATTTGTACTGATGCATGCAAAGGACTAGAGATTGCAGTGCACCGAGTTTTCCCTTGGGCTGAACATAGAGAATGTTTTAACCACCTTATGCAAAATCTAATCAAGAAATATGGTGGATCTGTCTTCCAAGAGATGTATCCTGCAGCTAGATCATATAGGGCACAAGTGCACGAGGAGTGTATGGATACAATTAAGAAAGCATGCACTGATGTGGCTCTCTGGCTTGACACTTGCCATAAATTGATATGGTACAGGAGTGGCTTCAATGCTGAAATTAAATGTGATTATGTCACTAACAATCTTGCAGAGTGCTTTAACAATTGGATCAGAGATATAAAGGCCTTACCTATTTGTGAGCTTGCTGACACATGTAGGGAGATGATAATGACCCTGTGGAATAGGAGGAGAAGGATTGGAAATAAATTCACAGGTACAATTCTACCTGCTAATTTGCACCAGTTGAGAGCTAGGACTCGAGGGTTAGGCCACTTGTCAGTTGTGCATGCTGACATAACCACTGCTGAGGTTTGGGACAATAGTAGCAGCCATGCTAGGCATGTTGTGAGGACACATGAGCAGTCTTGTACATGTCAGGAGTGGCAACACACTGGCAAGCCTTGCCGACATGCCTTGGCAGTGATTACCTCCTAGCAAATTAGGGATGTAAAGTTGGAGAAGTACATTAATCCCTACTACTCTGTGGCCCTATTCTGGAATGCATACAACTCAATTATTGAGCCACTCCCTGACAAATCACAATGGCCTAAGGTGGATTTACCTTTTGTTCTTGGTGCACCCCTTGCAAAAAGGAACCTAGGAAGGTACAGGAAACTAAGGATCAAGGGTTGCTTGAAAGGTGGTGGTAGCAAGCCTAAAGACAATGCCAAAGAGAAGGCAACGATTAGAGGAAAAAGGTGTAAAAAATGTGGTGAGTTGGGTCATGGACAAACTAGCTACAAGTGTAAGCTCAATGGTACAAAGAAGAAGCCGAAACGAAAGGCAAGATGGAACACAACGAGGTATGGGCCGGCTCCTGCTCCTAATGCTCCTGATGTGGTTTATGCCCCTGCTCCTGATGCTTATGCTGCTCCTGCTGCTCATGCTGCTCCTATACCATATACCCCAACTAGGCCTACTGTAGAAACCATTATTCAAGAAAGCCCAACAATTGTGACAAGACGCCGGCTTGCAATGTTAATGGAACAAGGAGGGACAAGCTCACAACCGGCACTTGCTTCACAAGTGACATGTAAAAGGAGGGTGAATATTGCTGAATCAAGCTCACAGCCGGCTCCATCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATGAAGCCTACTTGAATAGCTCCTCCTGTATCACAACTAATATTGTGTGCTGTGCATGTGAGGCACAATTATAGGAGGTATTTTGTGAACCATGGTGCATGTGAACCATGTTGGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATGTGAGGTCTTTTGTGAGCCATGGTGCATATGAACCACTACTATGTTGTGAACCATGGTGCATGTGAACCACTGTTATGTTGTGAACCATTGTTATGTGAGGTATTTTGTGAACCACATGCTATTCAATATTATGTCATA] [+] EMBL C71789 [ AGGGAGAAGCTGGGAAGCGGCATCGGCAGAGGCGACACCAGCNTGCCTCCACATCGGCTTCGTCTCCGGCGCCGNCCCCCNCCCCTCCNACTCCCCCACCTNGTCCTCCCCCAGTNAGCGCCGCCGGCCCCATCCGCCTCCGGCACCGGCCCCATCCGCCGCCACCCCCACCCCTATCCGCNGCCCCCATCCACCGCTGCCCCTCGGTCAGCTCCTCCCGCCCTCCACTCCCTCCTCCCCTCCCTCAATGTGTGGTTAGGGTTTGGCTCCATGGATGACTCCACCTGGCTACAGATTGTTGGGAGGTGACAAAGTTTACTAATCATCACACGTGTACATCTAGCGGTAGAAGGAAGACTACCACAACAACCAAGCGGCTGGNTTGCTTCCAAGGNCATCCATATCCTTGGGACAAGATTCAGGTATTGGGCCNTAAAGAACTtc ] [+] EMBL CB675183 [ TGTGTGGTTAGGGTTTGGCTCCATGGATGACTCCACCTGGCTACAGATTGTTGGGAGGTGACAAAGTTTACTAATCATCACACGTGTACATCTAGCGGTAGAAGGAAGACTACCACACCAACC AGCGCCTGGGTTGCTTCCAAGGCCATCCATATCCTTGGGAC AGATTCAGGTA TGGGCCCTAAAGAACTGCAAAAAAGGTTGCAAGAGGATCAGAAATGCAAAATCAATTATGATACTGTGGCTAAGGGTAGGAGTTTGGCTATGATCCAATTGCATGGTAGTTGGGAAGAGAATTTCCATATGTTGTATAGGTGGAGGGCTGCAGTCATGGAGAGGTCCCCAGGTAGTGTTATTGAGATTGACACTGTTGAGGTTGATGGGAAGGTTTATTTTAACAGATTCTTTTGTGCATTTAGTCCATGCATTACTGGATTTCTAACTGGATGTAGGCCATACCTTAGTGTAGACTCAACTGCCCTAAATGGTTTGTGGAAAGGACATTTAGCATCTGCCATAGCTATAGATGGAAACAACTGGATGTACCCTCTTGCTTTTGGTTTCTTTGATGCTGAGACTACTGATAATTGGACCTGGTTTATGATTCAATTGCTTAAGGCCATAGGAAAAGTATCTCCTCTTGCAATTTGTACTGATGCATGCAAAGGACTAGAGATTGCAGTGCACCGAGTTTTCCCTTGGGCTGAACATAGAGAATGTTTTAACCACCTTATGCAAAATCTAATCAAGAAATATGGTGGATCTGTCTTCCAAGAGA ] [+] EMBL CB637135 [ CCCTGGTAGTGTTATTGAGATTGACACTATTGAGGTTGATGGGAAGGTTTATTTTAACAGATTCTTTTGTGCACTTAGTCCATGGATTACTGGATTTCTAACTGGATGTAGGCCATACCTTAGTGTAGACTCAACTGCCCTAAATGGTTTGTGGAAAGGACATTTAGCATCTGCCATAGCTATAGATGGAAACAACTGGATGTACCCCATTGCTTTTGGTTTCTTTGATGCTGAGACTACTGATAATTGGACCTGGTTTATGATTCAATTGCTCAAGGCCATAGGAAAAGTATCTCCTCTTGCAATTTGTACTGATGCATGCAAAGGATTAGAGATTGCAGTGCACCGAGTTTTCCCTTGGGCTGGACATAGAGAATGTTTTAACCACCTTACGCAAAATCTAATCAAGAAATATGGTGGATCTGTCTTCCAAGAGATGTATCCTGTAGCTAGATCATATAGGGCACAAGTGCACGAGGAGTGTATGGATACAATTAAGAAAGCATGCACCGATGTGGCTCTCTGGCTTGACACTTACCATAAATTGATATGGTACAGGAGTGGCTTCAATGCTGAAATTAAATGTGATTATGTCACT ] [+] EMBL CB644906 [ ACGAGGAGTGTATGGATACAATTAAGAAAGCATGCACTGATGTGGCTCTCTGGCTTGACACTTGCCATAAATTGATATGGTACAGGAGTGGCTTCAATGCTGAAATTAAATGTGATTATGTCACTAACAATCTTGCAGAGTGCTTTAACAATTGGATCAGAGATATAAAGGCCTTACCTATTTGTGAGCTTGCTGACACATGTAGGGAGATGATAATGACCCTGTGGAATAGGAGGAGAAGGATTGGAAATAAATTCACAGGTACAATTCTACCTGCTAATTTGCACCAGTTGAGAGCTAGGACTCGAGGGTTAGGCCACTTGTCAGTTGTGCATGCTGACATAACCACTGCTGAGGTTTGGGACAATAGTAGCAGCCATGCTAGGCATGTTGTGAGGACACATGAGCAGTCTTGTACATGTCAGGAGTGGCAACACACTGGCAAGCCTTGCCGACATGCCTTGGCAGTGATTACCTCCTAGCAAATTAGGGATGTAAAGTTGGAGAAGTACATTAATCCCTACTACTCTGTGGCCCTATTCTGGAATGCATACAACTCAATTATTGAGCCACTCCCTGANCAATCACAATGGCCTAAGGTGGATTTACCTTTTGTTCTTGGTGCACCCCTTGCAAAAAGGAACCTA ] [-] EMBL CB644907 [ AGCAAGCCTAAAGACAATGCCAAAGAGAAGGCAACGATTAGAGGAAAAAGGTGTAAAAAATGTGGTGAGTTGGGTCATGGACAAACTAGCTACAAGTGTAAGCTCAATGGTACAAAGAAGAAGCCGAAACGAAAGGCAAGATGGAACACAACGAGGTATGGGCCGGCTCCTGCTCCTAATGCTCCTGATGTGGTTTATGCCCCTGCTCCTGATGCTTATGCTGCTCCTGCTGCTCATGCTGCTCCTATACCATATACCCCAACTAGGCCTACTGTAGAAACCATTATTCAAGAAAGCCCAACAATTGTGACAAGACGCCGGCTTGCAATGTTAATGGAACAAGGAGGGACAAGCTCACAACCGGCACTTGCTTCACAAGTGACATGTAAAAGGAGGGTGAATATTGCTGAATCAAGCTCACAGCCGGCTCCATCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATGAAGCCTACTTGAATAGCTCCTCCTGTATCACAACTAATATTGTGTGCTGTGCATGTGAGGCACAATTATAGGAGGTATTTTGTGAACCATGGTGCATGTGAACCATGTTGGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATGTGAGGTCTTTTGTGAACCATGGTGCATATGAACCACTACTATGTTGTGAACCATGGTGCATGTGAACCACTGTTATGTGGTGAACCATTGTTATGTGAGGTATTTTG GAGCCAaaaaaagga ] [-] EMBL CB675184 [ AAGCCGAAACGAAAGGCAAGATGGAACACAACGAGGTATGGGCCGGCTCCTGCTCCTAATGCTCCTGATGTGGTTTATGCCCCTGCTCCTGATGCTTATGCTGCTCCTGCTGTTCATGCTGCTCCTATACCATATACCCCAATTAGGCCTACTGTAGAAACCATTATTCAAGAAAGCCCAACAATTGTGACAAGACGCCGGCTTGCAATGTTAATGGAACAAGGAGGGACAAGTTCACAACCGGCACTTGTTTCACAAGTGACATGTAAAAGGAGGGTGAATATTGTTGAATCAAGTTCACAGCCGGTTCCATCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATGAAGCCTACTTGAATAGCTCCTCCTGTATCACAACTAATATTGTGTGCTGTGCATGTGAGGCACAATTATAGGAGGTATTTTGTGAACCATGGTGCATGTGAACCATGTTGGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATGTGAGGTTTTTTGTGAACCATGGTGCATATGAACCATTATTATGTTGTGAACCATGGTGCATGTGAACCACTGTTATGTTGTGAACCATTGTTAGGTGAGGTATT ] [+] EMBL AU184291 [ CCGGCACTTGCTTCNCAAGTGACATGTAAAAGGAGGGTGAATATTGTTGAATCAAGCTCCCANCCGGCTCCATCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATNAAGCCTACTTGAATAGCTCCTCCTGTATCACAACTAATANTGTGTGCTGTGCATGTNAGGCACAATTATAGGAGGTATTTTGTGAACCATGGTGCATGTGAACCATGTTGGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATGTGAGGTCTTTTGTGAACCATGGTGCATATGAACCACTACTATGTTGTGAACCATGGTGCNTGTGAACCACTGTTATGTTGTGAACCATTGTTATGTGAGGTATTTTGTGAACCACATGCTATTCAATATTAaaaaa ] consensusID : consensus_13161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 747 fasta sequence [AAGGTGGTGGTAGCAAGCCTAAAGACTGCCAAAGAGAAGGCAACGATTAGAGGAAAAAGAGGTGTAAAAAATGCGGTGAGTTGGGTCATGGACAAACTAGCTACAAGTGCAAGCTCAATGGTACAAAGAAGAAGCCGAAACGAAAGGCAAGATGGAACACAATGGGGTATGGGCCGGCTCCTGCTCCTAATGCTCCTGATGTGGTTTATGCCCCTGCTCCTGATGCTCCTGATGCTCCTGCTGCTCATGTTGCTCCTGCTCCTATACCACATACCCCAACTAGGCCTACTGTACAAACCATTATTCAAGAAAGCCCAACAGTTGTGACAAGACGCCGGCTTGCAATGTTAATGGAACAAGGAGGGACAAGCACACAACCGGCACTTGCTTCACAAGTGACATGTAAAAGGAGGTTGAATATTGCTGAATCAAGCTCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATGAAGCCTACTTGATTGTGTGCTATGCATGTGAGGCACTGTTATAAGAGGTATTTTGTGAACCATGGTGGTGTATGTGAACCATGTTAGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATTTGAGGTCTTTTGTGAACCATGGTGCATGTGAACCATGGTGCATGTGAACCACTGTTATGTTGTGACCACTGTTATGTTGTGAACCATTGTTATGTGAGGTATTTTGTGACCCACATGTTATTCAATATTATGTCTAC] [+] EMBL CB682289 [AAGGTGGTGGTAGCAAGCCTAAAGACTGCCAAAGAGAAGGCAACGATTAGAGGAAAAAGAGGTGTAAAAAATGCGGTGAGTTGGGTCATGGACAAACTAGCTACAAGTGCAAGCTCAATGGTACAAAGAAGAAGCCGAAACGAAAGGCAAGATGGAACACAATGGGGTATGGGCCGGCTCCTGCTCCTAATGCTCCTGATGTGGTTTATGCCCCTGCTCCTGATGCTCCTGATGCTCCTGCTGCTCATGTTGCTCCTGCTCCTATACCACATACCCCAACTAGGCCTACTGTACAAACCATTATTCAAGAAAGCCCAACAGTTGTGACAAGACGCCGGCTTGCAATGTTAATGGAACAAGGAGGGACAAGCACACAACCGGCACTTGCTTCACAAGTGACATGTAAAAGGAGGTTGAATATTGCTGAATCAAGCTCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATGAAGCCTACTTGATTGTGTGCTATGCATGTGAGGCACTGTTATAAGAGGTATTTTGTGAACCATGGTGGTGTATGTGAACCATGTTAGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATTTGAGGTCTTTTGTGAACCATGGTGCATGTGAACCATGGTGCATGTGAACCACTGTTATGTTGTGACCACTGTTATGTTGTGAACCATTGTTATGTGAGGTATTTTGTGACCCACATGTTATTCAATATTATG ] [-] EMBL CB637136 [ AGCCCAACAGTTGTGACAAGACGCCGGCTTGCAATGTTAATGGAACAAGGAGGGACAAGCACACAACGGGCACTTGTTTCACAAGTGACATGTAAAAGGAGGTTGAATATTGTTGAATCAAGCTCAAAGAGGACATGTACAAAGAAGTTCACACCCAAGAAAATGAAGCCTACTTGATTGTGTGCTAGGCATGTGAGGCATTGTTATAAGAGGTATTTTGTGAACCATGGTGGTGTATGTGAACCATGTTAGTGTATGTGACCCCCCTTTGTTGTTGGTGCATGTGAGGCACTGTTATTTAAGGTTTTTTGTGACCCATGGGGCATGTGAACCATGGTGCATGTGAACCACTGTTATGTTGTGACCACTGTTATGTTGTGAACCATTGTTATGTGAGGTATTTTGTGAACCACATGCTATTCAATATTATGTCTAC] consensusID : consensus_13161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CATATACCCCAACTAGGCCTACTGTAGAAACCATTATTCAAGAAAGCCCAACAATTGTGACAAGACGCCGGCTNGCAATGTTAATGGAACAAGGAGGGACAAGCTCACAACCGGCACTTGCTTCACAAGTGACATGTAAAAGGAGGGTGAATATTGCTGAATCAAGCTCCACAGCCGGCTCCATCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATGAAGCCTACTTGAATAGCTCCTCCTGTATCACAACTAATATTGTGTGCTGTGCATGTGAGGCACAATTATAGGAGGTATTTTGTGAACCATGGTGCATGTGAACCATGTTGGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATGTGAGGTCTTTTGTGAACCATGGTGCATATGAACCACTACTATGTTGTGAACCATGGTGCATGTGAACCACTGTTATGTTGTGAACCATTGTTATGTGAGGTATTTTGTGAACCAAAAAAAAAAAAAAA] [+] EMBL C98506 [CATATACCCCAACTAGGCCTACTGTAGAAACCATTATTCAAGAAAGCCCAACAATTGTGACAAGACGCCGGCTNGCAATGTTAATGGAACAAGGAGGGACAAGCTCACAACCGGCACTTGCTTCACAAGTGACATGTAAAAGGAGGGTGAATATTGCTGAATCAAGCTCCACAGCCGGCTCCATCAAAGAGGACATGTACAAAGAAGCTCACACCCAAGAAAATGAAGCCTACTTGAATAGCTCCTCCTGTATCACAACTAATATTGTGTGCTGTGCATGTGAGGCACAATTATAGGAGGTATTTTGTGAACCATGGTGCATGTGAACCATGTTGGTGTATGTGAACCACCTTTGTTGTTGGTGCATGTGAGGCACTGTTATGTGAGGTCTTTTGTGAACCATGGTGCATATGAACCACTACTATGTTGTGAACCATGGTGCATGTGAACCACTGTTATGTTGTGAACCATTGTTATGTGAGGTATTTTGTGAACCAAAAAAAAAAAAAAA] consensusID : consensus_13161#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TTTTTTGGTTCACAAAATACCTCACATAACAATGGTTCACAACATAACAGTAGTTCACAACATACCAGTGGTTCACATGCACCATGGTTCACAACGTAATAAAGACAAGGACACAAGGGTATTTTGGTCAGAACAAAACTTAAAATAGAGTAAAATCATTTCTAGCAATCAAAAAGATCTAAAATAGCATTTCAGTGACCACCCTTAGTTTATGATAGCATTTAATGAATCACTTTGAAGGGATAGCATTCCAGCGAAACCATTCTTTTGCGATAGCAAAATCACAATTTTCTCCCTCCTTTCGCCTCCTTCCCTACCGGCGTCGCTTGGATTCCACAGGTGTGTGCCCCTCTCCTCGTC] [+] EMBL CF328854 [TTTTTTGGTTCACAAAATACCTCACATAACAATGGTTCACAACATAACAGTAGTTCACAACATACCAGTGGTTCACATGCACCATGGTTCACAACGTAATAAAGACAAGGACACAAGGGTATTTTGGTCAGAACAAAACTTAAAATAGAGTAAAATCATTTCTAGCAATCAAAAAGATCTAAAATAGCATTTCAGTGACCACCCTTAGTTTATGATAGCATTTAATGAATCACTTTGAAGGGATAGCATTCCAGCGAAACCATTCTTTTGCGATAGCAAAATCACAATTTTCTCCCTCCTTTCGCCTCCTTCCCTACCGGCGTCGCTTGGATTCCACAGGTGTGTGCCCCTCTCCTCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13161#0 TGTTGACTGAGGAGGGAGAAGCTGGGAGCGGCATCGGCAGAGGCGACACCAGCGTGCCTC 60 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 CACATCGGCTTCGTCTCCGGCGCCGGCCCCCGCCCCTGCCACTCCCCCACCTCGTCCTCC 120 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 CCCAGTCAGCGCCGCCGCCCCCATCCGCCTCCGCCACCGCCCCCATCCGCCGCCACCCCC 180 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 ACCCCTATCCGCCGCCCCCATCCACCGCTGCCCCTCGGTCAGCTCCTCCCGCCCTCCACT 240 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 CCCTCCTCCCCTCCCTCAATGTGTGGTTAGGGTTTGGCTCCATGGATGACTCCACCTGGC 300 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 TACAGATTGTTGGGAGGTGACAAAGTTTACTAATCATCACACGTGTACATCTAGCGGTAG 360 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AAGGAAGACTACCACACCAACCAGCGCCTGGGTTGCTTCCAAGGCCATCCATATCCTTGG 420 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 GACAGATTCAGGTATGGGCCCTAAAGAACTGCAAAAAGGTTGCAAGAGGATCAGAAATGC 480 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AAAATCAATTATGATACTGTGGCTAAGGGTAGGAGTTTGGCTATGATCCAATTGCATGGT 540 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AGTTGGGAAGAGAATTTCCATATGTTGTATAGGTGGAGGGCTGCAGTCATGGAGAGGTCC 600 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 CCAGGTAGTGTTATTGAGATTGACACTGTTGAGGTTGATGGGAAGGTTTATTTTAACAGA 660 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 TTCTTTTGTGCATTTAGTCCATGCATTACTGGATTTCTAACTGGATGTAGGCCATACCTT 720 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AGTGTAGACTCAACTGCCCTAAATGGTTTGTGGAAAGGACATTTAGCATCTGCCATAGCT 780 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 ATAGATGGAAACAACTGGATGTACCCTCTTGCTTTTGGTTTCTTTGATGCTGAGACTACT 840 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 GATAATTGGACCTGGTTTATGATTCAATTGCTTAAGGCCATAGGAAAAGTATCTCCTCTT 900 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 GCAATTTGTACTGATGCATGCAAAGGACTAGAGATTGCAGTGCACCGAGTTTTCCCTTGG 960 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 GCTGAACATAGAGAATGTTTTAACCACCTTATGCAAAATCTAATCAAGAAATATGGTGGA 1020 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 TCTGTCTTCCAAGAGATGTATCCTGCAGCTAGATCATATAGGGCACAAGTGCACGAGGAG 1080 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 TGTATGGATACAATTAAGAAAGCATGCACTGATGTGGCTCTCTGGCTTGACACTTGCCAT 1140 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AAATTGATATGGTACAGGAGTGGCTTCAATGCTGAAATTAAATGTGATTATGTCACTAAC 1200 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AATCTTGCAGAGTGCTTTAACAATTGGATCAGAGATATAAAGGCCTTACCTATTTGTGAG 1260 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 CTTGCTGACACATGTAGGGAGATGATAATGACCCTGTGGAATAGGAGGAGAAGGATTGGA 1320 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AATAAATTCACAGGTACAATTCTACCTGCTAATTTGCACCAGTTGAGAGCTAGGACTCGA 1380 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 GGGTTAGGCCACTTGTCAGTTGTGCATGCTGACATAACCACTGCTGAGGTTTGGGACAAT 1440 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AGTAGCAGCCATGCTAGGCATGTTGTGAGGACACATGAGCAGTCTTGTACATGTCAGGAG 1500 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 TGGCAACACACTGGCAAGCCTTGCCGACATGCCTTGGCAGTGATTACCTCCTAGCAAATT 1560 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 AGGGATGTAAAGTTGGAGAAGTACATTAATCCCTACTACTCTGTGGCCCTATTCTGGAAT 1620 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 GCATACAACTCAATTATTGAGCCACTCCCTGACAAATCACAATGGCCTAAGGTGGATTTA 1680 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 CCTTTTGTTCTTGGTGCACCCCTTGCAAAAAGGAACCTAGGAAGGTACAGGAAACTAAGG 1740 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ------------------------------------------------------------ consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 ATCAAGGGTTGCTTGAAAGGTGGTGGTAGCAAGCCTAAAGACAATGCCAAAGAGAAGGCA 1800 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ----------------AAGGTGGTGGTAGCAAGCCTAAAGAC--TGCCAAAGAGAAGGCA 42 consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 ACGATTAGAGGAAAAAG--GTGTAAAAAATGTGGTGAGTTGGGTCATGGACAAACTAGCT 1858 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ACGATTAGAGGAAAAAGAGGTGTAAAAAATGCGGTGAGTTGGGTCATGGACAAACTAGCT 102 consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 ACAAGTGTAAGCTCAATGGTACAAAGAAGAAGCCGAAACGAAAGGCAAGATGGAACACAA 1918 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 ACAAGTGCAAGCTCAATGGTACAAAGAAGAAGCCGAAACGAAAGGCAAGATGGAACACAA 162 consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 CGAGGTATGGGCCGGCTCCTGCTCCTAATGCTCCTGATGTGGTTTATGCCCCTGCTCCTG 1978 consensus_13161#2 ------------------------------------------------------------ consensus_13161#1 TGGGGTATGGGCCGGCTCCTGCTCCTAATGCTCCTGATGTGGTTTATGCCCCTGCTCCTG 222 consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 ATGCTTATGCTGCTCCTGCTGCTCATG------CTGCTCCTATACCATATACCCCAACTA 2032 consensus_13161#2 ---------------------------------------------CATATACCCCAACTA 15 consensus_13161#1 ATGCTCCTGATGCTCCTGCTGCTCATGTTGCTCCTGCTCCTATACCACATACCCCAACTA 282 consensus_13161#3 ------------------------------------------------------------ consensus_13161#0 GGCCTACTGTAGAAACCATTATTCAAGAAAGCCCAACAATTGTGACAAGACGCCGGCTTG 2092 consensus_13161#2 GGCCTACTGTAGAAACCATTATTCAAGAAAGCCCAACAATTGTGACAAGACGCCGGCTNG 75 consensus_13161#1 GGCCTACTGTACAAACCATTATTCAAGAAAGCCCAACAGTTGTGACAAGACGCCGGCTTG 342 consensus_13161#3 ---------------------TTTTTTGGTTCACAAAATACCTCACATAACAATGGTTCA 39 ** * *** * * *** ** ** * consensus_13161#0 CAATGTTAATGGAACAAGGAGGGACAAGCTCACAACCGG--CACTTGCTTCACAAGTGAC 2150 consensus_13161#2 CAATGTTAATGGAACAAGGAGGGACAAGCTCACAACCGG--CACTTGCTTCACAAGTGAC 133 consensus_13161#1 CAATGTTAATGGAACAAGGAGGGACAAGCACACAACCGG--CACTTGCTTCACAAGTGAC 400 consensus_13161#3 CAACAT------AACAGTAGTTCACAA-CATACCAGTGGTTCACATGCACCATGGTTCAC 92 *** * **** **** * ** * ** *** *** ** * ** consensus_13161#0 A-TGTAAAAGGAGGGTGAATATTGCTGAATCAAGCTC-ACAGCCGGCTCCATCAAAGAGG 2208 consensus_13161#2 A-TGTAAAAGGAGGGTGAATATTGCTGAATCAAGCTCCACAGCCGGCTCCATCAAAGAGG 192 consensus_13161#1 A-TGTAAAAGGAGGTTGAATATTGCTGAATCAAGCTC----------------AAAGAGG 443 consensus_13161#3 AACGTAATAAAGACAAGGACACAAGGGTATTTTGGTC---------------AGAACAAA 137 * **** * * * * * ** * ** ** * consensus_13161#0 ACATGTA-CAAAG-AAGCTCACACCCAAGAAAATGAAGCCTACTTGAATAGCTCCTCCTG 2266 consensus_13161#2 ACATGTA-CAAAG-AAGCTCACACCCAAGAAAATGAAGCCTACTTGAATAGCTCCTCCTG 250 consensus_13161#1 ACATGTA-CAAAG-AAGCTCACACCCAAGAAAATGAAGCCTACTTGA------------- 488 consensus_13161#3 ACTTAAAATAGAGTAAAATCAT-TTCTAGCAATCAAAAAGATCTAAAATAGCATTTC--- 193 ** * * * ** ** *** * ** ** ** ** * consensus_13161#0 TATCACAACTAATATTGTGTGCTGTGCATGTGAGGCACAATTATAGGAGGTATTTTGTGA 2326 consensus_13161#2 TATCACAACTAATATTGTGTGCTGTGCATGTGAGGCACAATTATAGGAGGTATTTTGTGA 310 consensus_13161#1 --------------TTGTGTGCTATGCATGTGAGGCACTGTTATAAGAGGTATTTTGTGA 534 consensus_13161#3 -------------AGTGACCACCCTTAGTTTATGATAGCATTTAATGAATCACTTTG-AA 239 ** * * * * * * ** * ** * **** * consensus_13161#0 ACCATGGTG---CATGTGAACCATGTTGGTG---TATGTGAACCACCTTTGTTGTTGGTG 2380 consensus_13161#2 ACCATGGTG---CATGTGAACCATGTTGGTG---TATGTGAACCACCTTTGTTGTTGGTG 364 consensus_13161#1 ACCATGGTGGTGTATGTGAACCATGTTAGTG---TATGTGAACCACCTTTGTTGTTGGTG 591 consensus_13161#3 GGGATAGCATTCCAGCGAAACCATTCTTTTGCGATAGCAAAATCACAATT-TTCTCCCTC 298 ** * * ****** * ** ** ** *** ** ** * * consensus_13161#0 CATGTGAGGCACTGTTATGTGAGGTCTTTTGTGAACCATGGTGCATATGAACCACTACTA 2440 consensus_13161#2 CATGTGAGGCACTGTTATGTGAGGTCTTTTGTGAACCATGGTGCATATGAACCACTACTA 424 consensus_13161#1 CATGTGAGGCACTGTTATTTGAGGTCTTTTGTGAACCATGGTGCATGTGAACCA-TGGTG 650 consensus_13161#3 CTTTCGCCTCCTTCCCTACCGGCGTCGCTTGGATTCCACAG-GTGTGTGCCCCTCTCCT- 356 * * * * * * *** *** *** * * * ** ** * * consensus_13161#0 TGTTGTGAACCA-TGGTGCATGTGAACCACTGTTATGTTGTGAACCATTGTTATGTGAGG 2499 consensus_13161#2 TGTTGTGAACCA-TGGTGCATGTGAACCACTGTTATGTTGTGAACCATTGTTATGTGAGG 483 consensus_13161#1 CAT-GTGAACCACTGTTATGTTGTGACCACTGTTATGTTGTGAACCATTGTTATGTGAGG 709 consensus_13161#3 CGTC-------------------------------------------------------- 360 * consensus_13161#0 TATTTTGTGAACCACATGCTATTCAATATTATGTCATA 2537 consensus_13161#2 TATTTTGTGAACCAAAAAAAAAAAAAAA---------- 511 consensus_13161#1 TATTTTGTGACCCACATGTTATTCAATATTATGTCTAC 747 consensus_13161#3 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||