These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1802 fasta sequence [ATCGTCAGACTTTGAATCCGGAGACAGTGTCAGACAAAAAAATCGTGTTCACTGGCCAGCCTCTTCTACCCTTCTTCTGATCCTCTCCCGTATAGCCATTTCGTCGAACACCTTCCCGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCGAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGACACGGCGGCCGGCGAGATCGCCGCCGCGGTCGGCGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTTTTTGTCATTCTTTTTGGAGTTGGCCTGGTGTGATATGATAGATTGAACTGTGAACCACAAGTGAATGGAGAAAATGACTTGATTTGGCACCACTATACCAAGGTTCTAGCTGTGACTCATGAGGTTTGGAGAAACTGATGGCATGGAGGGCTGGACTGGTAGAGCTCTGGGTCCTTGCAGACATCATTCCTCTGTTCTTTCCACCACCATGGCATGGTCAGAGCAAATTCCACTTGCATCTAATGGAACGGTGCCTTCTTTTCCGTATTTAAGTACTGTATTAGTGGAAACTTTCAGTCTTTCATTGTGCCATTCGTCATTTCTGATCTGTTGTGTGAGAGAAATTTTGAGAAAAGGGAGGAAAAGCTCTACCCCTTCACTTGGCGTTACAGAATCTATTCCTCATTATGTTGTCTATTTACTTTTTGTGCGATACTGATACGGTAAGCATATCGTAGTGCTGTTTAGTGTCTGTTGAGCACTTCAGCCCCTTAGAACTGTTGTGCTTAGCACTACAATGCTTGCGGCTATATAATAATAAGACATCCCTTCAGATTTAAGGGGCCATTTCTGTTTAGCTTGATTTTTTTCCCCAACATGTTGTTCT] [+] EMBL AK065970 [ATCGTCAGACTTTGAATCCGGAGACAGTGTCAGACAAAAAAATCGTGTTCACTGGCCAGCCTCTTCTACCCTTCTTCTGATCCTCTCCCGTATAGCCATTTCGTCGAACACCTTCCCGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCGAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGACACGGCGGCCGGCGAGATCGCCGCCGCGGTCGGCGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTTTTTGTCATTCTTTTTGGAGTTGGCCTGGTGTGATATGATAGATTGAACTGTGAACCACAAGTGAATGGAGAAAATGACTTGATTTGGCACCACTATACCAAGGTTCTAGCTGTGACTCATGAGGTTTGGAGAAACTGATGGCATGGAGGGCTGGACTGGTAGAGCTCTGGGTCCTTGCAGACATCATTCCTCTGTTCTTTCCACCACCATGGCATGGTCAGAGCAAATTCCACTTGCATCTAATGGAACGGTGCCTTCTTTTCCGTATTTAAGTACTGTATTAGTGGAAACTTTCAGTCTTTCATTGTGCCATTCGTCATTTCTGATCTGTTGTGTGAGAGAAATTTTGAGAAAAGGGAGGAAAAGCTCTACCCCTTCACTTGGCGTTACAGAATCTATTCCTCATTATGTTGTCTATTTACTTTTTGTGCGATACTGATACGGTAAGCATATCGTAGTGCT ] [+] EMBL AK099143 [ CTTCCCGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCCAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGACACGGCGGCCGGCGAGATCGCCGCCGCGGTCGGCGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTTTTTGTCATTCTTTTTGGAGTTGGCCTGGTGTGATATGATAGATTTAACTGTGAACCACAAGTGAATGGAGAAAATGACTTGATTTGGCACCACTATACCAAGGTTCTAGCTGTGACTCATGAGGTTTGGAGAAACTGATGGCATGGAGGGCTGGACTGGTAGAGCTCTGGGTCCTTGCAGACATCATTCCTCTGTTCTTTCCACCACCATGGCATGGTCAGAGCAAATTCCACTTGCATCTAATGGAACGGTGCCTTCTTTTCCGTATTTAAGTACTGTATTAGTGGAAACTTTCAGTCTTTCATTGTGCCATTCGTCATTTCTGATCTGTTGTGTGAGAGAAATTTTGAGAAAAGGGAGGAAAAGCTCTACCCCTTCACTTGGCGTTACAGAATCTATTCCTCAT ] [+] EMBL CB667392 [ TGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGACACGGCGGCCGGCGAGATCGCCGCCGCGGTCGGCGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTTTTTGTCATTCTTTTTGGAGTTGGCCTGGTGTGATATGATAGATTGAACTGTGAACCACAAGTGAATGGAGAAAATGACTTGATTTGGCACCACTATACCAAGGTTCTAGCTGTGACTCATGAGGTTTGGAGAAACTGATGGCATGGAGGGCTGGACTGGTAGAGCTCTGGGTCCTTGCAGACATCATTCCTCTGTTCTTTCCACCACCATGGCATGGTCAGAGCAAATTCCACTTGCATCTAATGGAACGGTGCCTTCTTTTCCGTATTTAAGTACTGTATTAGTGGAAACTTTCAGTCTTTCATTGTGCCATTCGTCA ] [-] EMBL CB667393 [ ATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTTTTTGTCATTCTTTTTGGAGTTGGCCTGGTGTGATATGATAGATTGAACTGTGAACCACAAGTGAATGGAGAAAATGACTTGATTTGGCACCACTATACCAAGGTTCTAGCTGTGACTCATGAGGTTTGGAGAAACTGATGGCATGGAGGGCTGGACTGGTAGAGCTCTGGGTCCTTGCAGACATCATTCCTCTGTTCTTTCCACCACCATGGCATGGTCAGAGCAAATTCCACTTGCATCTAATGGAACGGTGCCTTCTTTTCCGTATTTAAGTACTGTATTAGTGGAAACTTTCAGTCTTTCATTGTGCCATTCGTCATTTCTGATCTGTTGTGTGAGAGAAATTTTGAGAAAAGGGAGGAAAAGCTCTACCCCTTCACTTGGCGTTACAGAATCTATTCCTCATTATGTTGTCTATTTACTTTTTGTGCGATACTGATACGGTAAGCATATCGTAGTGCTGTTTAGTGTCTGTTGAGCACTTCAGCCCCTTAGAACTGTTGTGCTTAGCACTACAATGCTTGCGGCTATATAATAATAAGACATCCCTTCAGATTTAAGGGGCCATTTCTGTTTAGCTTGATTTTTTTCCCCAACATGTTGTTCT] consensusID : consensus_13164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1411 fasta sequence [ACAGTGTCAGACAAAAAAATCGTGTTCACTGGCCAGCCTCTTCTACCCTTCTTCTGATCCTCTCCCGTATAGCCATTTCGTCGAACACCTTCCCGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCCAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGAC-ACGGCGGCCGGCGAGATCGCCGCCGCGGTCGG-CGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTATTCTCCGGTGCCTCTCTTCTCATACTGTAATGTAATTTGCATTTGATATGCCTCATGATTGCAATAAGAATTGTATTCCTCACACCTGTAGCTGGTTGAGATAGGTTCTGCCATCCGTTTGTTCTGTGACTTTGTTCGCAATGGTGACATTTTTGTAGTTTGTGCTATAAATCGAATCAATTCAGGTTAAACTGTACTCAAGTAAAGTTGTTCTTTTACTGTTGTTTGGGAATAACATG] [+] EMBL AK071756 [ACAGTGTCAGACAAAAAAATCGTGTTCACTGGCCAGCCTCTTCTACCCTTCTTCTGATCCTCTCCCGTATAGCCATTTCGTCGAACACCTTCCCGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCCAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACAT CGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGAC ACGGCGGCCGGCGAGATCGCCGCCGCGGTCGG CGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTATTCTCCGGTGCCTCTCTTCTCATACTGTAATGTAATTTGCATTTGATATGCCTCATGATTGCAATAAGA ] [+] EMBL AK104439 [ TCGTCGAACACCTTCCCGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCCAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGAC ACGGCGGCCGGCGAGATCGCCGCCGCGGTCGG CGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTATTCTCCGGTGCCTCTCTTCTCATACTGTAATGTAATTTGCATTTGATATGCCTCATGATTGCAATAAGAATTGTATTCCTCACACCTGTAGCTGGTTGAGATAGGTTCTGCCATCCGTTTGTTCTGTGACTTTGTTCGCAATGGTGACATTTTTGTAGTTTGTGCTATAAATCGAATCAATTCAG ] [+] EMBL AK070256 [ CGAACACCTTCCCGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCCAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGAC ACGGCGGCCGGCGAGATCGCCGCCGCGGTCGG CGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTATTCTCCGGTGCCTCTCTTCTCATACTGTAATGTAATTTGCATTTGATATGCCTCATGATTGCAATAAGAATTGTATTCCTCACACCTGTAGCTGGTTGAGATAGGTTCTGCCATCCGTTTGTTCTGTGACTTTGTTCGCAATGGTGACATTTTTGTAGTTTGTGCTATAAATCGAATCAATTCAGGTTAAACTGTACTCAAGTAAAGTTGTTCTTTTACTGTTGTTTGGGAATAACATG] [+] EMBL CB654421 [ CCCGAGCCTACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCCAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGAC ACGGCGGCCGGCGAGATCGCCGCCGCGGTCGG CGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAA ] [+] EMBL BE040653 [ cgGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCCAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGTGTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCGGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTNCTCACCGNGCGCCCCTTCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTCCAGCCAATCATCGGCTCCGGTCACATCCCCGTCATCGCCACTGTGGGCGNCGACGAGACCCGGCAGGCCTACAACATCAACGCTGAC ACGGCGGGCGGCGAGATCGCCGCCGCGGgc ] [-] EMBL CB654422 [ ggCGCCACCGTCCTCCACCCAATCATGGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGACAACGGCGGCCGGCGAGATCGCCGCCGCGGTCGGTCGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGG GATTCATCCCGTCGTGGTATTCTCCGGTGCCTCTCTTCTCATACTGTAATGTAATTTGCATTTGATATGCCTCATGATTGCAATAAGAATTGTATTCCTCACACCTGTAGCTGGTTGAGATAGGTTGGGCCATCCGTTTGTTCTGTGACTTTGTTCGCAATGGTGACATTTTTGTAGTTTGTGCTATAAATCGTTTAAGGGCAGGTTAANCTGTCCTCAAG ] consensusID : consensus_13164#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [TCGCGCCGCGGCGACGTTAGGCATTTCGTCGAACACCTAGAGCGCANCATGATGCTCACCAAGCCCCACCCTTCGTCCAACCTCCTCCTCCCCACCACCACAGCGCTCCCAAATCCTAGCCCAAACCCTAGCCGCAAGACGGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGAGCTGCAGTCGTCGGTGATCCGCGACCTGGTCCTCCTCTCCTGCGTCGGCCTCCGCCCCGTGCTC] [+] EMBL OSS1289A [TCGCGCCGCGGCGACGTTAGGCATTTCGTCGAACACCTAGAGCGCANCATGATGCTCACCAAGCCCCACCCTTCGTCCAACCTCCTCCTCCCCACCACCACAGCGCTCCCAAATCCTAGCCCAAACCCTAGCCGCAAGACGGTGGTGGTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGAGCTGCAGTCGTCGGTGATCCGCGACCTGGTCCTCCTCTCCTGCGTCGGCCTCCGCCCCGTGCTC] consensusID : consensus_13164#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [AGAAAAGGGAGGAAAAGCTCTACCCCTTCACTTGGCGTTACAGAATCTATTCCTCATTATGTTGTCTATTTACTTTTTGTGCGATACTGATACGGTAAGCATATCGTAGTGCTGTTTAGTGTCTGTTGAGCACTTCAGCCCCTTAGAACTGTTGTGCTTAGCACTACAATGCTTGCGGCTATATAATAATAAGACATACCTTCAGATTTAAAAAAAAAAAAAAAAAAAACTCGAGA] [-] EMBL BE040488 [AGAAAAGGGAGGAAAAGCTCTACCCCTTCACTTGGCGTTACAGAATCTATTCCTCATTATGTTGTCTATTTACTTTTTGTGCGATACTGATACGGTAAGCATATCGTAGTGCTGTTTAGTGTCTGTTGAGCACTTCAGCCCCTTAGAACTGTTGTGCTTAGCACTACAATGCTTGCGGCTATATAATAATAAGACATACCTTCAGATTTAAAAAAAAAAAAAAAAAAAACTCGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13164#0 ATCGTCAGACTTTGAATCCGGAGACAGTGTCAGACAAAAAAATCGTGTTCACTGGCCAGC 60 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ------------------------------------------------------------ consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CTCTTCTACCCTTCTTCTGATCCTCTCCCGTATAGCCATTTCGTCGAACACCTTCCCGAG 120 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ------------------------------------------------------------ consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAGCCCCACCTCTCCTCCTCCTCTTTC 180 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ------------------------------------------------------------ consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGTCCGAACCACGCAAAGCCCATCGCC 240 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ------------------------------------------------------------ consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCCGTCACATCCGCCGCGGCGCCGGCT 300 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ------------------------------------------------------------ consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGCGTGGATGTGCTCTCAGAGGCGCTC 360 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ------------------------------------------------------------ consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTGGTGAAGTACGGCGGCGCGGCGATG 420 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 -----------------------------------------------ACAGTGTCAGACA 13 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 AAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGACCTGGTCCTCCTCTCGTGCGTCGGC 480 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 AAAAAATCGTGTTCACTGGCCAGCCTCTTCTACCCTTCTTCTGATCCTCTCCCGTATAGC 73 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAGATCAACTCCTGGCTGCTCCGCGTC 540 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 CATTTCGTCGAACACCTTCCCGAGCCGACTGCCGCCGCCGCCGCCATGCTCCTCGCGAAG 133 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTCACTGACGCGCTCACCATGGAGGTC 600 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 CCCCACCTCTCCTCCTCCTCTTTCCTCCCATCCACGCGGGTGTCTAGCCCCGCTCCGGGT 193 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCACCTCGTCTCCCTCATCAACCTCGCG 660 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 CCCAACCACGCAAAGCCCATCGCCGCCTCTCCCGCCCCTCGACGCTGCCTCCGTCTCGCC 253 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCTCGCCTCCTCACCGCGCGCCCCTCC 720 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 GTCACATCCGCCGCGGCGCCGGCTGCTTCGTCGGCGGAGGCGGCGGCGGCGCTGAGCCGC 313 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTCTCGCGCGTGGACGCCACCGTCCTC 780 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 GTGGATGTGCTCTCAGAGGCGCTCCCCTTCATCCAGCGCTTCAAGGGGAAGACCGTGGTG 373 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CACCCAATCATCGCCTCCGGTCACATCCCGGTCATCGCCACTGTGGCCGCCGACGAGACC 840 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 GTGAAGTACGGCGGCGCGGCGATGAAGTCGCCGGAGCTCCAGGCTTCAGTGATCCGCGAC 433 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GGGCAGGCCTACAACATCAACGCTGACACGGCGGCCGGCGAGATCGCCGCCGCGGTCGGC 900 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 CTGGTCCTCCTCTCGTGCGTCGGCCTCCACCCCGTGCTCGTCCACGGCGGCGGCCCCGAG 493 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCC 960 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ATCAACTCCTGGCTGCTCCGCGTCGGCGTCGAGCCGCAGTTCCGGAACGGCCTCCGCGTC 553 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTGCGGCAGATGGTGGCCGACGGGCAG 1020 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ACTGACGCGCTCACCATGGAGGTCGTCGAGATGGTGCTCGTCGGCAAGGTCAACAAGCAC 613 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCTCGCACAGGGCGTG 1080 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 CTCGTCTCCCTCATCAACCTCGCGGGCGGAACCGCCGTAGGTCTCTGTGGCAAGGACGCT 673 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACA 1140 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 CGCCTCCTCACCGCGCGCCCCTCCCCGAACGCAGCGGCCCTCGGCTTCGTCGGCGAGGTC 733 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GATGAGGGCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTCGTGGTTTTTGT 1200 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 TCGCGCGTGGACGCCACCGTCCTCCACCCAATCATCGCCTCCGGTCACATCCCGGTCATC 793 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 CATTCTTTTTGGAGTTGGCCTGGTGTGATATGATAGATTGAACTGTGAACCACAAGTGAA 1260 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 GCCACTGTGGCCGCCGACGAGACCGGGCAGGCCTACAACATCAACGCTGACACGGCGGCC 853 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 TGGAGAAAATGACTTGATTTGGCACCACTATACCAAGGTTCTAGCTGTGACTCATGAGGT 1320 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 GGCGAGATCGCCGCCGCGGTCGGCGCGGAGAAGCTGTTGCTGCTCACAGATGTGTCTGGA 913 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 TTGGAGAAACTGATGGCATGGAGGGCTGGACTGGTAGAGCTCTGGGTCCTTGCAGACATC 1380 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 ATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATTGCTGGGGTG 973 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 ATTCCTCTGTTCTTTCCACCACCATGGCATGGTCAGAGCAAATTCCACTTGCATCTAATG 1440 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 CGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGC 1033 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 GAACGGTGCCTTCTTTTCCGTATTTAAGTACTGTATTAGTGGAAACTTTCAGTCTTTCAT 1500 consensus_13164#3 ------------------------------------------------------------ consensus_13164#1 GTGCGTGCCCTCGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCAC 1093 consensus_13164#2 ------------------------------------------------------------ consensus_13164#0 TGTGCCATTCGTCATTTCTGATCTGTTGTGTGAGAGAAATTTTGAGAAAAGGGAGGAAAA 1560 consensus_13164#3 --------------------------------------------AGAAAAGGGAGGAAAA 16 consensus_13164#1 TCGTTGCTGCTCGAGATTCTCACAGATGAGGGCACTGGCACTATGATCACTGGCTGAGGT 1153 consensus_13164#2 -------------------------------------------TCGCGCCGCGGCGACGT 17 * ** consensus_13164#0 GCTCTACCCCTTCACTTGGCGTTACAGAATCTAT-TCCTCATTATGTTGTCTA-TTTACT 1618 consensus_13164#3 GCTCTACCCCTTCACTTGGCGTTACAGAATCTAT-TCCTCATTATGTTGTCTA-TTTACT 74 consensus_13164#1 GATTCATCCCGTCGTGGTATTCTCCGGTGCCTCTCTTCTCATACTGTAATGTAATTTGCA 1213 consensus_13164#2 TAGGCATTTCGTCGAACACCTAGAGCGCANCATGATGCTCACCAAGCCCCACCCTTCGTC 77 * * ** * * * **** * ** consensus_13164#0 TTT--TGTGCGATACTGATACGGTAAGCATATCGTAGTGCTGTTTAGTGTCTG-TTGAGC 1675 consensus_13164#3 TTT--TGTGCGATACTGATACGGTAAGCATATCGTAGTGCTGTTTAGTGTCTG-TTGAGC 131 consensus_13164#1 TTTGATATGCCTCATGATTGCAATAAGAATTGTATTCCTCACACCTGTAGCTGGTTGAGA 1273 consensus_13164#2 CAACCTCCTCCTCCCCACCACCACAGCGCTCCCAAATCCTAGCCCAAACCCTAGCCGCAA 137 * * * * * ** * consensus_13164#0 --ACTTCAGCCCCTTAGAACTGTTGTGCTTAGCACTACAATGCTTGCGGCTATATAATA- 1732 consensus_13164#3 --ACTTCAGCCCCTTAGAACTGTTGTGCTTAGCACTACAATGCTTGCGGCTATATAATA- 188 consensus_13164#1 TAGGTTCTGCCATCCGTTTGTTCTGTGACTTTGTTCGCAATGGTGACATTTTTGTAGTTT 1333 consensus_13164#2 -GACGGTGGTGGTGAAGTACGGCGGCGC--GGCGATGAAGTCGCCGAGCTGCAGTCGTCG 194 * * * * * * * consensus_13164#0 -----ATAAGACATCCC--TTCAGATTTAAGGGGCCATTTCTGTTTAGCTTGATTTTTTT 1785 consensus_13164#3 -----ATAAGACATACC--TTCAGATTTAAAAAAAAAAAAAAAAAAAACTCGAGA----- 236 consensus_13164#1 GTGCTATAAATCGAATCAATTCAGGTTAAACTGTACTCAAGTAAAGTTGTTCTTTTACTG 1393 consensus_13164#2 GTGATCCGCGACCTGGTCCTCCTCTCCTGCGTCGGCCTCCGCCCCGTGCTC--------- 245 * * * * consensus_13164#0 CCCCAACATGTTGTTCT- 1802 consensus_13164#3 ------------------ consensus_13164#1 TTGTTTGGGAATAACATG 1411 consensus_13164#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||