cluster # 13168

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Oryza sativa
cluster # 13168 cluster # 13168 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13168#0 length = 792 sequences # 4
consensus_13168#1 length = 690 sequences # 4

consensus_13168#2 length = 475 sequences # 3
consensus_13168#3 length = 433 sequences # 1

consensusID : consensus_13168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 792
fasta sequence

                              [CAGAGAGGAGTAAATAAATACTCACGAAAGAAAGAGTTCAGAGAAAAAAAAAAGTTGAAACGAAAGCGAAACAGTAGCTCTCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGCATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGCATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTCGGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCCAGCGGCAGCGGCGGCGGCGGCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTTATTTCTACATGCAGGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAATTAAGTCTTTTCTGTATAAAAA]

[+] EMBL AK062886             [CAGAGAGGAGTAAATAAATACTCACGAAAGAAAGAGTTCAGAGAAAAAAAAAAGTTGAAACGAAAGCGAAACAGTAGCTCTCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGCATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGCATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTCGGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCCAGCGGCAGCGGCGGCGGCGGCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTTATTTCTACATGCAGGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAATTAAG                 ]
[+] EMBL C29123               [                                                                     AACAGTAGCTCTCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGCATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGCATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTCGGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTNAGGAGGCCACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA766666             [                                                                                                                                                                                                                                                             AAGGGGGAGGAAGAAGAAGAGAAGGAGGGCTGTGAGGAGGCCACGTCAGCGGCAGCGGCGGCGGCGGCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCTTGTCCCTGAGCCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTTATTTCTACATGCAGGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTATCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAATTAAGTCTTTTCT         ]
[+] EMBL AU172395             [                                                                                                                                                                                                                                                                                                                                                                           CATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTTATTTCTACATGCAGGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAATTAAGTCTTTTCTGTATAAAAA]




>consensus_13168#0
CAGAGAGGAGTAAATAAATACTCACGAAAGAAAGAGTTCAGAGAAAAAAAAAAGTTGAAA
CGAAAGCGAAACAGTAGCTCTCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGC
ATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGC
ATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTC
GGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCC
AGCGGCAGCGGCGGCGGCGGCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGCA
GTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAA
GGCAAGCTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGG
AGAAGAGGACATGAAGAGCAGTTATTTCTACATGCAGGAGGCGACCACTCGGGTGCGGGC
AGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGG
ACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCT
ACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACG
TGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAATTAAGTCTTT
TCTGTATAAAAA

consensusID : consensus_13168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 690
fasta sequence

                              [TCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGCATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGCATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTCGGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCCAGCGGCAGCGGCGGGCGGC-GGCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTTAAAAAAAAAAAAAAA]

[+] EMBL CF333408             [TCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGCATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGCATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTCGGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCCAGCGGCAGCGGCGGGCGGCGGGCGGCGCCGTCATTCTTCGCGCACCCCTGCTCGCTGCTGCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCCTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGA                                                                                    ]
[+] EMBL CF277918             [       GAGACGACGCCGCTGTCTCCAGAAGCTACGAGCATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGCATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTCGGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCCAGCGGCAGCGGC GGCGGC GGCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGCCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTA                                                                       ]
[+] EMBL AT003747             [                                                                                                                                                                                                                                              C GGCGGCNCCGTCATTNTTCGCGCACCCTTGCTCGCTGCTGCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTTAAAAAAAAAAAAAAA]
[+] EMBL AT003683             [                                                                                                                                                                                                                                                                                                                                                  CAAAGGCAAGCTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGNACATGAAGAGCAGTGAGGCGACCCCTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCCCCGGNCAATCCGAGAAAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTTTAAACGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTNTATTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAAAAAAAAAAAAAAAA]




>consensus_13168#1
TCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGCATCTAGAGCGGCAATGGATC
GGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGCATCGGATCGGTGCGAAGACA
ACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTCGGTGGACCAGCGCAAGGAGG
AGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCCAGCGGCAGCGGCGGGCGGCG
GCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGCAGTACATAGCCCGGGTCTGC
GCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCTTGTC
CCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGC
AGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCG
AGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGT
CTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGT
GGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAAC
TTGTTCGAGTGTTTTAAAAAAAAAAAAAAA

consensusID : consensus_13168#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 475
fasta sequence

                              [GCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCCTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTG-TTCGAGTGTTTAATTAAGTCTTTTCTGTAAAAAAAATGTGTTCAAAAAAAAAAAAAAAAAAAAACACGGTCATGCCGTTACGTAGCGTAT]

[-] EMBL CF333409             [GCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCCAAAGGCAAGCTCTGTTCCTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTG TTCGAGTGTTTAATTAAGTCTTTTCTGTAAAAAAAA                                                      ]
[-] EMBL CF277919             [                                                                                                    GCTGCCGACCCGTCTCAAGAAGGAGAAGAGGACATGAAGAGCAGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTAGGCAGCCTGCTTCGATCGCCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTG TTCGAGTGTTTAATTAAGTCTTTTCTGTATATCTTATGTGTTCAAAAAAAAAAAAAAAAAAAAACACGGTCATGCCGTTACGTAGCGTAT]
[+] EMBL BM421264             [                                                                                                                                                                                                                                                                                                   ccgTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGCTTCGAGTGTTTAATTAAGTCTTTTCTGTAAAAA                                                         ]




>consensus_13168#2
GCAGTACATAGCCCGGGTCTGCGCCTGCTGCCTCGGCCTCAGCGATTCTTTCTGCGACCC
AAAGGCAAGCTCTGTTCCTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAAGA
AGGAGAAGAGGACATGAAGAGCAGTGAGGCGACCACTCGGGTGCGGGCAGCGCGGCTAAG
GCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACACCATCACTA
GGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTCTAAG
CGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGTTTACGTGGACTTTTGAG
GATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAATTAAGTCTTTTCTGTAAAAAAA
ATGTGTTCAAAAAAAAAAAAAAAAAAAAACACGGTCATGCCGTTACGTAGCGTAT

consensusID : consensus_13168#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [NCCCTTGGCNGGGNNCTGCAGTACATAGCCCGGGTNGNGCGCCTGNTGCCCTNGGCCTCAGCNGATTCTTTCTAGGNCCCAAAGGCAAGGCTCTGTTNTTGNCCCTGAACCTGAACNTGCAGCTGCCGTTCCGTCTCANGAAGGAGAAGAGGCCATGAAGAGCAGNGAGGCGNCCACTCGGGTGCGGGCAGCGCGGNTAAGGCCGAACCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACNCCATCNCTAGGCAGCCNGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTTTAAGNGGNGTGCTNGTATAAAAATGTGGCCGAACNAGTTNNACNCGTTTNCGTGNACTTNTNAGGNTNTGNCCTTNCAGTNAAAACTTGTTCGAGTGTTTTTAAAAAAAAAAAAAA]

[+] EMBL AT003540             [NCCCTTGGCNGGGNNCTGCAGTACATAGCCCGGGTNGNGCGCCTGNTGCCCTNGGCCTCAGCNGATTCTTTCTAGGNCCCAAAGGCAAGGCTCTGTTNTTGNCCCTGAACCTGAACNTGCAGCTGCCGTTCCGTCTCANGAAGGAGAAGAGGCCATGAAGAGCAGNGAGGCGNCCACTCGGGTGCGGGCAGCGCGGNTAAGGCCGAACCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAATGGAGGACNCCATCNCTAGGCAGCCNGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTGTGTCTACTTGTTTTAAGNGGNGTGCTNGTATAAAAATGTGGCCGAACNAGTTNNACNCGTTTNCGTGNACTTNTNAGGNTNTGNCCTTNCAGTNAAAACTTGTTCGAGTGTTTTTAAAAAAAAAAAAAA]




>consensus_13168#3
NCCCTTGGCNGGGNNCTGCAGTACATAGCCCGGGTNGNGCGCCTGNTGCCCTNGGCCTCA
GCNGATTCTTTCTAGGNCCCAAAGGCAAGGCTCTGTTNTTGNCCCTGAACCTGAACNTGC
AGCTGCCGTTCCGTCTCANGAAGGAGAAGAGGCCATGAAGAGCAGNGAGGCGNCCACTCG
GGTGCGGGCAGCGCGGNTAAGGCCGAACCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGG
CAATGGAGGACNCCATCNCTAGGCAGCCNGCTTCGATCGTCGTCTTCAGTCTTCAGTTGA
GCTGTGTCTACTTGTTTTAAGNGGNGTGCTNGTATAAAAATGTGGCCGAACNAGTTNNAC
NCGTTTNCGTGNACTTNTNAGGNTNTGNCCTTNCAGTNAAAACTTGTTCGAGTGTTTTTA
AAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13168#0      CAGAGAGGAGTAAATAAATACTCACGAAAGAAAGAGTTCAGAGAAAAAAAAAAGTTGAAA 60
consensus_13168#1      ------------------------------------------------------------
consensus_13168#3      ------------------------------------------------------------
consensus_13168#2      ------------------------------------------------------------
                                                                                   

consensus_13168#0      CGAAAGCGAAACAGTAGCTCTCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGC 120
consensus_13168#1      --------------------TCTCGCCGAGACGACGCCGCTGTCTCCAGAAGCTACGAGC 40
consensus_13168#3      ------------------------------------------------------------
consensus_13168#2      ------------------------------------------------------------
                                                                                   

consensus_13168#0      ATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGC 180
consensus_13168#1      ATCTAGAGCGGCAATGGATCGGGTCGAGGAAAAGGAGGGGAACCGATTCCAAGAACCAGC 100
consensus_13168#3      ------------------------------------------------------------
consensus_13168#2      ------------------------------------------------------------
                                                                                   

consensus_13168#0      ATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTC 240
consensus_13168#1      ATCGGATCGGTGCGAAGACAACGAAGATAAGGAGCAGGACAACTCTGAAGAATCATCGTC 160
consensus_13168#3      ------------------------------------------------------------
consensus_13168#2      ------------------------------------------------------------
                                                                                   

consensus_13168#0      GGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCC 300
consensus_13168#1      GGTGGACCAGCGCAAGGAGGAGGAAGAAGAAGAAAAGGAGGGCTGTGAGGAGGCCACGCC 220
consensus_13168#3      ------------------------------------------------------------
consensus_13168#2      ------------------------------------------------------------
                                                                                   

consensus_13168#0      AGCGGCAGCGGCGG-CGGCGGCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGC 359
consensus_13168#1      AGCGGCAGCGGCGGGCGGCGGCGGCGCCGTCATTCTTCGCGCACCCTTGCTCGCTGCTGC 280
consensus_13168#3      -----------------------------------------NCCCTTGGCNGGGNNCTGC 19
consensus_13168#2      ----------------------------------------------------------GC 2
                                                                                 **

consensus_13168#0      AGTACATAGCCCGGGTC-TGCGCCTGCTGCC-TCGGCCTCAGCG-ATTCTTTCTGCGACC 416
consensus_13168#1      AGTACATAGCCCGGGTC-TGCGCCTGCTGCC-TCGGCCTCAGCG-ATTCTTTCTGCGACC 337
consensus_13168#3      AGTACATAGCCCGGGTNGNGCGCCTGNTGCCCTNGGCCTCAGCNGATTCTTTCTAGGNCC 79
consensus_13168#2      AGTACATAGCCCGGGTC-TGCGCCTGCTGCC-TCGGCCTCAGCG-ATTCTTTCTGCGACC 59
                       ****************   ******* **** * *********  *********  * **

consensus_13168#0      CAAAGGCAAG-CTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAA 475
consensus_13168#1      CAAAGGCAAG-CTCTGTTCTTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAA 396
consensus_13168#3      CAAAGGCAAGGCTCTGTTNTTGNCCCTGAACCTGAACNTGCAGCTGCCGTTCCGTCTCAN 139
consensus_13168#2      CAAAGGCAAG-CTCTGTTCCTGTCCCTGAACCTGAACCTGCAGCTGCCGACCCGTCTCAA 118
                       ********** *******  ** ************** ***********  ******** 

consensus_13168#0      GAAGGAGAAGAGGACATGAAGAGCAGTTATTTCTACATGCAGGAGGCGACCACTCGGGTG 535
consensus_13168#1      GAAGGAGAAGAGGACATGAAGAGCAGT---------------GAGGCGACCACTCGGGTG 441
consensus_13168#3      GAAGGAGAAGAGGCCATGAAGAGCAGN---------------GAGGCGNCCACTCGGGTG 184
consensus_13168#2      GAAGGAGAAGAGGACATGAAGAGCAGT---------------GAGGCGACCACTCGGGTG 163
                       ************* ************                ****** ***********

consensus_13168#0      CGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAAT 595
consensus_13168#1      CGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAAT 501
consensus_13168#3      CGGGCAGCGCGGNTAAGGCCGAACCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAAT 244
consensus_13168#2      CGGGCAGCGCGGCTAAGGCCGAAGCCGCCGGGCAATCCGAGAGAAGGGAGCGGCGGCAAT 223
                       ************ ********** ************************************

consensus_13168#0      GGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTG 655
consensus_13168#1      GGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTG 561
consensus_13168#3      GGAGGACNCCATCNCTAGGCAGCCNGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTG 304
consensus_13168#2      GGAGGACACCATCACTAGGCAGCCTGCTTCGATCGTCGTCTTCAGTCTTCAGTTGAGCTG 283
                       ******* ***** ********** ***********************************

consensus_13168#0      TGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGT 715
consensus_13168#1      TGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGT 621
consensus_13168#3      TGTCTACTTGTTTTAAGNGGNGTGCTNGTATAAAAATGTGGCCGAACNAGTTNNACNCGT 364
consensus_13168#2      TGTCTACTTGTTCTAAGCGGCGTGCTTGTATAAAAATGTGGCCGAACAAGTTCTACTAGT 343
                       ************ **** ** ***** ******************** ****  **  **

consensus_13168#0      TTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAATTAAG 775
consensus_13168#1      TTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTTAAAAAA 681
consensus_13168#3      TTNCGTGNACTTNTNAGGNTNTGNCCTTNCAGTNAAAACTTGTTCGAGTGTTTTTAAAAA 424
consensus_13168#2      TTACGTGGACTTTTGAGGATCTGAACTTTCAGTGAAAACTTGTTCGAGTGTTTAATTAAG 403
                       ** **** **** * *** * **  *** **** *******************    ** 

consensus_13168#0      TCTTTTCTGTATAAAAA------------------------------------------- 792
consensus_13168#1      --------AAAAAAAAA------------------------------------------- 690
consensus_13168#3      --------AAAAAAAAA------------------------------------------- 433
consensus_13168#2      TCTTTTCTGTAAAAAAAATGTGTTCAAAAAAAAAAAAAAAAAAAAACACGGTCATGCCGT 463
                                 * *****                                           

consensus_13168#0      ------------
consensus_13168#1      ------------
consensus_13168#3      ------------
consensus_13168#2      TACGTAGCGTAT 475