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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2100 fasta sequence
[ACTTCGCCGACCACGACTCCGACGATTCCGCGGAGCTCCTCTCGCACCGGCAGCAGCAAAATTACAGTATATTAAGTGAAGCCGATATACAACAGCGCCAAGAGGATGATATAAATAGGGTTTCAACTGTTCTTTCAATTTCAAAGTCAGAAGCATGTGTTCTTCTTCGTAATTATAACTGGAGTGTCAGTAAGGTGCATGATGAATGGTTTGCTGATGAAGAACATGTTCGTAAGGTTGTTGGTTTTCCGGAAAAGCTCATCGAAATGCCAAATGACAGAGAATTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCCATCCGTTCTGTAGTGCATGTTGGAGAGGTTATATTAGCACTTCTATAAATGATGGTCCAGGATGCTTGATGTTAAGATGTCCTGATCCGTCCTGCACAGCTGCTGTTGGTCAAGATATGATCAATTCACTGGCTGATGACGAGGATAGGGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGGAAGACAAAATGGTGTCCTGCTCCTGGATGTGAATATGCTGTAGAATTTGTCATGGGCAGTGGTAGCTATGATGTGAACTGCAACTGTTCATACGGCTTTTGTTGGAACTGCACTGAGGAAGCTCATCGTCCGGTCGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTGGATTCTAGCTAATTCAAAGCCTTGTCCTAAGTGCAAGCGGCCCATTGAAAAAAACCAGGGATGCATGCACATTACATGCACACCTCCATGCAAATTTGAGTTTTGCTGGCTGTGTCTTGGTCCATGGTCGGAGCATGGAGAACGGACTGGTGGATTTTATGCCTGTAACCGTTATGAGGCAGCAAGGCAGGAAGGAGCGTATGATGAATCTGAAAGGAGAAGAGAAATGGCAAAGAACTCGCTTGAGAGATATACACACTATTATGAACGGTGGGCAGCCAATCAGTCGTCGAGGCAAAAGGCATTAGGAGATCTGCTGAGTTTGCAAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAGATTGTCGAATGTAGGAGGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAAGACAGTTCTTTGAATATCTGCAAGGTGAGGCGGAATCAGGTTTGGAGCGGCTGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTAAATGATGTAGGTCCTTCCACTAGCCATGGTACATGCAGCAAGAGCGCAACTTCGAAGAGTCTTGGCAGTAAAAGTAAGAGTAGCAAGAGCAGAGCATCCAGTACCAGCTCCAAAACAGGTGGCTCGAGCCGTGGTGTCGATGAAAGCAACATTTGGACGTGTGACCAGTGCACATATGCTAACCCCAGATCTGCCAGAAACTGCCAGGCTTGTAACAACCAGCATCGATAGCATTACATAGCTATGGTTTTAGATCTCGACTCCATTGGTTGAGAAACCTCTGGTTCAAACCTGGTGGTAAAGAACATATGCAAAGTTGAAGTTTTCAATGAACAGTGGAGCTGGCGTGAGGAGGTATTAGCAGAGAACTGTTGCATATGCAAATTAGATTTTCTCAACTCATCATGTGCTATGGCTGAGAAACCTCAGGTCATTCCCAATTTTTTTAATCAACTGACGGTATCCTTGAAGCCTCGCTCATCATCATCTAGTTCATCCTGTATATAACTCTATATCGATATCTGTAACTCTTGTGTTGTTCTATGGAAGTAGCGCGTACTAGCAGATGTGCGCCACCAATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAATTGGCCAATTCTCAAGGAAATTTATTCATCCTGTTCCAGAATAAAGA]
[+] EMBL CB628504 [ACTTCGCCGACCACGACTCCGACGATTCCGCGGAGCTCCTCTCGCACCGGCAGCAGCAAAATTACAGTATATTAAGTGAAGCCGATATACAACAGCGCCAAGAGGATGATATAAATAGGGTTTCAACTGTTCTTTCAATTTCAAAGTCAGAAGCATGTGTTCTTCTTCGTAATTATAACTGGAGTGTCAGTAAGGTGCATGATGAATGGTTTGCTGATGAAGAACATGTTCGTAAGGTTGTTGGTTTTCCGGAAAAGCTCATCGAAATGCCAAATGACAGAGAATTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCCATCCGTTCTGTAGTGCATGTTGGAGAGGTTATATTAGCACTTCTATAAATGATGGTCCAGGATGCTTGATGTTAAGATGTCCTGATCCGTCCTGCACAGCTGCTGTTGGTCAAGATATGATCAATTCACTGGCTGATGACGAGGATAGGGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGGAAGACAAAATGGTGTCCTGCTCCTGGATGTGAATATGCTGTAGAATTTGTCATGGGCAGTGGTAGCTATGATGTGAACTGCAACTGTTCATACGGCTTTTGTTGGAACTGCACTGAGGAAGCTCATCGTCCGGTCGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTGGATTCTAGCTAATTAAA ]
[+] EMBL AK060196 [ GAAAAGCTCATCGAAATGCCAAATGACAGAGAATTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCCATCCGTTCTGTAGTGCATGTTGGAGAGGTTATATTAGCACTTCTATAAATGATGGTCCAGGATGCTTGATGTTAAGATGTCCTGATCCGTCCTGCACAGCTGCTGTTGGTCAAGATATGATCAATTCACTGGCTGATGACGAGGATAGGGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGGAAGACAAAATGGTGTCCTGCTCCTGGATGTGAATATGCTGTAGAATTTGTCATGGGCAGTGGTAGCTATGATGTGAACTGCAACTGTTCATACGGCTTTTGTTGGAACTGCACTGAGGAAGCTCATCGTCCGGTAGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTGGATTCTAGCTAATTCAAAGCCTTGTCCTAAGTGCAAGCGGCCCATTGAAAAAAACCAGGGATGCATGCACATTACATGCACACCTCCATGCAAATTTGAGTTTTGCTGGCTGTGTCTTGGTCCATGGTCGGAGCATGGAGAACGGACTGGTGGATTTTATGCCTGTAACCGTTATGAGGCAGCAAGGCAGGAAGGAGCGTATGATGAATCTGAAAGGAGAAGAGAAATGGCAAAGAACTCGCTTGAGAGATATACACACTATTATGAACGGTGGGCAGCCAATCAGTCGTCGAGGCAAAAGGCATTAGGAGATCTGCTGAGTTTGCAAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAGATTGTCGAATGTAGGAGGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAAGACAGTTCTTTGAATATCTGCAAGGTGAGGCGGAATCAGGTTTGGAGCGGCTGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTAAATGATGTAGGTCCTTCCACTAGCCATGGTACATGCAGCAAGAGCGCAACTTCGAAGAGTCTTGGCAGTAAAAGTAAGAGTAGCAAGAGCAGAGCATCCAGTACCAGCTCCAAAACAGGTGGCTCGAGCCGTGGTGTCGATGAAAGCAACATTTGGACGTGTGACCAGTGCACATATGCTAACCCCAGATCTGCCAGAAACTGCCAGGCTTGTAACAACCAGCATCGATAGCATTACATAGCTATGGTTTTAGATCTCGACTCCATTGGTTGAGAAACCTCTGGTTCAAACCTGGTGGTAAAGAACATATGCAAAGTTGAAGTTTTCAATGAACAGTGGAGCTGGCGTGAGGAGGTATTAGCAGAGAACTGTTGCCTATGCAAATTAGATTTTCTCAACTCATCATGTGCTATGGCTAAAAAACCTCAGGTCATTCCCAATTTTTTTAATCAACTGACGGTATCCTTGAAGCCTCGCTCATCATCATCTAGTTCATCCTGTATATAACTCTATATCGATATCTGTAACTCTTGTGTTGTTCTATGGAAGTAGCGCGTACTAGCAGATGTGCGCCACCAATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAATTGGCCAATTCTCAAGG ]
[+] EMBL CB619547 [ AGCTGCTGCTGGTCAAGATATGATCAATTCACTGGCTGATGACGAGGATAGGGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGGAAGACAAAATGGTGTCCTGCTCCTGGATGTGAATATGCTGTAGAATTTGTCATGGGCAGTGGTAGCTATGATGTGAACTGCAACTGTTCATACGGCTTTTGTTGGAACTGCACTGAGGAAGCTCATCGTCCGGTCGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTGGATTCTAGCTAATTCAAAGCCTTGTCCTAAGTGCAAGCGGCCCATTGAAAAAAACCAGGGATGCATGCACATTACATGCACACCTCCATGCAAATTTGAGTTTTGCTGGCTGTGTCTTGGTCCATGGTCGGAGCATGGAGAACGGACTGGTGGATTTTATGCCTGTAACCGTTATGAGGCAGCAAGGCAGGAAGGAGCGTATGATGAATCTGAAAGGAGAAGAGAAATGGCAAAGAACTCGCTTGAGAGATATACACACTATTATGAACGGTGGGCAGCCAATCAGTCGTCGAGGCAAAAGGCATTAGGAGATCTGCTGAGTTTGCAAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAGATTGTCGAATGTAGGAGGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAAGACAGTTCTT ]
[+] EMBL CF196137 [ TGCACACCTCCATGCAAATTTGAGTTTTGCTGGCTGTGTCTTGGTCCATGGTCGGAGCATGGAGAACGGACTGGTGGATTTTATGCCTGTAACCGTTATGAGGCAGCAAGGCAGGAAGGAGCGTATGATGAATCTGAAAGGAGAAGAGAAATGGCAAAGAACTCGCTTGAGAGATATACACACTATTATGAACGGTGGGCAGCCAATCAGTCGTCGAGGCAAAAGGCATTAGTAGATCTGCTGAGTTTGCAAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAGATTGTCGAATGTAGGAGGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAAGACAGTTCTTTGAATATCTGCAAGGTGAGGCGGAATCAGGTTTGGAGCGGCTGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGNNNNNNNATCTCCCTCNNNNNNNNTCNATGACTTCCGTACnnnnntg ]
[-] EMBL CB619548 [ GCGGAATCAGGTTTGGAGCGGCTGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTAAATGATGTAGGTCCTTCCACTAGCCATGGTACATGCAGCAAGAGCGCAACTTCGAAAAGTCTTGGCAGTAAAAGTAAGAGTAGCAAGAGCAGAGCATCCAGTACCAGCTCCAAAACAGGTGGCTCGAGCCGTGGTGTCGATGAAAGCAACATTTGGACGTGTGACCAGTGCACATATGCTAACCCCAGATCTGCCAGAAACTGCCAGGCTTGTAACAACCAGCATCGATAGCATTACATAGCTATGGTTTTAGATCTCGACTCCATTGGTTGAGAAACCTCTGGTTCAAACCTGGTGGTAAAGAACATATGCAAAGTTGAAGTTTTCAATGAACAGTGGAGCTGGCGTGAGGAGGTATTAGCAGAGAACTGTTGCATATGCAAATTAGATTTTCTCAACTCATCATGTGCTATGGCTGAGAAACCTCAGGTCATTCCCAATTTTTTTAATCAACTGACGGTATCCTTGAAGCCTCGCTCATCATCATCTAGTTCATCCTGTATATAACTCTATATCGATATCTGTAACTCTTGTGTTGTTCTATGGAAGTAGCGCGTACTAGCAGATGTGCGCCACCAATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAATTGGCCAATTCTCAAGGAAATTTATTCATCCTGTTCCAGAAT ]
[-] EMBL CB677432 [ CAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTAAATGATGTAGGTCCTTCCACTAGCCATGGTACATGCAGCAAGAGCGCAACTTCGAAGAGTCTTGGCAGTAAAAGTAAGAGTAGCAAGAGCAGAGCATCCAGTACCAGCTCCAAAACAGGTGGCTCGAGCCGTGGTGTCGATGAAAGCAACATTTGGACGTGTGACCAGTGCACATATGCTAACCCCAGATCTGCCAGAAACTGCCAGGCTTGTAACAACCAGCATCGATAGCATTACATAGCTATGGTTTTAGATCTCGACTCCATTGGTTGAGAAACCTCTGGTTCAAACCTGGTGGTAAAGAACATATGCAAAGTTGAAGTTTTCAATGAACAGTGGAGCTGGCGTGAGGAGGTATTAGCAGAGAACTGTTGCCTATGCAAATTAGATTTTCTCAACTCATCATGTGCTATGGCTAAAAAACCTCAGGTCATTCCCAATTTTTTTAATCAACTGACGGTATCCTTGAAGCCTCGCTCATCATCATCTAGTTCATCCTGTATATAACTCTATATCGATATCTGTAACTCTTGTGTTGTTCTATGGAAGTAGCGCGTACTAGCAGATGTGCGCCACCAATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAATTGGCCAATTCTCAAGGAAATTTATTCATCCTGTTCCAAAAAAAAGA]
[-] EMBL CB628505 [ ACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTGGATTAAATGATGTAGGTCCTTCCACTAGCCATGGTACATGCAGCAAGAGCGCAACTTCGAAAAGTCTTGGCAGTAAAAGTAAGAGTAGCAAGAGCAGAGCATCCAGTACCAGCTCCAAAACAGGTGGCTCGAGCCGTGGTGTCGATGAAAGCAACATTTGGACGTGTGACCAGTGCACATATGCTAACCCCAGATCTGCCAGAAACTGCCAGGCTTGTAACAACCAGCATCGATAGCATTACATAGCTATGGTTTTAGATCTCGACTCCATTGGTTGAGAAACCTCTGGTTCAAACCTGGTGGTAAAGAACATATGCAAAGTTGAAGTTTTCAATGAACAGTGGAGCTGGCGTGAGGAGGTATTAGCAGAGAACTGTTGCATATGCAAATTAGATTTTCTCAACTCATCATGTGCTATGGCTGAGAAACCTCAGGTCATTCCCAATTTTTTTAATCAACTGACGGTATCCTTGAAGCCTCGCTCATCATCATCTAGTTCATCCTGTATATAACTCTATATCGATATCTGTAACTCTTGTGTTGTTCTATGGAAGTAGGGCGTACTAGCAGATGTGCGCCACCAATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAAAAGGCCAATTCTCAAGGAAATTTATT ]
[+] EMBL BI803557 [ CAAAACAGGTGGCTCGA CCGTGGTGTCGATGAAAGCAACATTTGGACGTGTGACCAGTGCACATATGCTAACCCCAGATCT CCAGAAACTGCCAGGCTTGTAACAACCAGCATCGATAGCATTACATAGCTATGGTTTTAGATCTCGACTCCATTGGTTGAGAAACCTCTGGTTCAAACCTGGTGGTAAAGAACATATGCAAAGTTGAAGTTTTCAATGAACAGTGGAGCTGGCGTGAGGAGGTATTAGCAGAGAACTGTTGCATATGCAAATTAGATTTTCTCAACTCATCATGTGCTATGGCTGAGAAACCTCAGGTCATTCCC ATTTTTTTAATCAACTGACGGTATCCTTGAAGCCTCGCTCATCATCATCTAGTTCATCCTGTATATAACTCTATATCGATATCTGTAACTCTTGTGTTGTTCTATGGAAGTAGCGCGTACTAGCAGATGTGCGCCACCAATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAATTGGCC ATTCTCAAGGAAATTTATTCAaaa ]
consensusID : consensus_13169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence
[GCTCATCGTCCGGTAGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTGGATTCTAGCTAATTCAAAGCCTTGTCCTAAGTGCAAGCGGCCCATTGAAAAAAACCAGGGATGCATGCACATTACATGCACACCTCCATGCAAATTTGAGTTTTGCTGGCTGTGTCTTGGTCCATGGTCGGAGCATGGAGAACGGACTGGTGGATTTTATGCCTGTAACCGTTATGAGGCAGCAAGGCAGGAAGGAGCGTATGATGAATCTGAAAGGAGAAGAGAAATGGCAAAGAACTCGCTTGAGAGATATACACACTATTATGAACGGTGGGCAGCCAATCAGTCGTCGAGGCAAAAGGCATTAGGAGATCTGCTGAGTTTGCAAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAGGTTAGTTTTCATTGCCAAGTTTAGTTCTCTCATAAGCCTCCTAGATCTCTCATGGGCGAGTTTAATAATTTCAATACGCAGATTGTCGAATGTAGGAGGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAAGACAGTTCTTTGAATATCTGCAAGGTGAGGCGGAATCAGGTTTGGAGCGGCTGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTG]
[+] EMBL CB677431 [GCTCATCGTCCGGTAGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTGGATTCTAGCTAATTCAAAGCCTTGTCCTAAGTGCAAGCGGCCCATTGAAAAAAACCAGGGATGCATGCACATTACATGCACACCTCCATGCAAATTTGAGTTTTGCTGGCTGTGTCTTGGTCCATGGTCGGAGCATGGAGAACGGACTGGTGGATTTTATGCCTGTAACCGTTATGAGGCAGCAAGGCAGGAAGGAGCGTATGATGAATCTGAAAGGAGAAGAGAAATGGCAAAGAACTCGCTTGAGAGATATACACACTATTATGAACGGTGGGCAGCCAATCAGTCGTCGAGGCAAAAGGCATTAGGAGATCTGCTGAGTTTGCAAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAGGTTAGTTTTCATTGCCAAGTTTAGTTCTCTCATAAGCCTCCTAGATCTCTCATGGGCGAGTTTAATAATTTCAATACGCAGATTGTCGAATGTAGGAGGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAAGACAGTTCTTTGAATATCTGCAAGGTGAGGCGGAATCAGGTTTGGAGCGGCTGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTGTCCGGGCTTTGGAGACTG]
[+] EMBL CF324496 [ GCAAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAGGTTAGTTTTCATTGCCAAGTTTAGTTCTCTCATAAGCCTCCTAGATCTCTCATGGGCGAGTTTAATAATTTCAATACGCAGATTGTCGAATGTAGGAGGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAAGACAGTTCTTTGAATATCTGCAAGGTGAGGCGGAATCATGTTTGGAGCGGCTGCATCAATGTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATGACTTCCGTACAAAGTTGGC ]
consensusID : consensus_13169#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[GACGACTTCTACAGCGCCGGGGGAGCCGGGCTCGCGGGAGCGACGACGGGACGCCGACTACGACTTCGCCGACCACGACTCCGACGATTCCGCGGAGCTCCTCTCGCACCGGCAGCAGGTGATCCCGGGTTCGCGCGCGCCCTGTGGGCGATGAGTGCTTTGGAATGGCGTGGGGTGGTGGGGGCGTAGCTCGTGGTTCGATCTGTCACGGGGTGGGAATGCCCGGAAATTGCAGGATCGTGAATCTAGGCGATCGATGGGAAGGTTTGCTGCCATGCTGCACGTATATGCTTCGTTGGTTGGTGGATTTTGATGTAGTCCGGGAGAATGATATTGCATTGGCTGCCATCCATAATCAATGCGTCGATGCTAGCTAGGACCTCTCTGAAACATTTATACATTTTTGCATTTATTTTTCTTACAGGAAGTGTGGGGATCCGAGATTTTTGGTGGTGTGGGCATAGTGTTGACGAATAAAATACATGTGGGGCAGTAGGCGTCTTATACTCTGTCATCAACAACTACATCATGTTCCATAGGACAATGTAAACTAATCACAGATTAGTGGATTTTGCATTCACAAAA]
[+] EMBL BI804292 [GACGACTTCTACAGCGCCGGGGGAGCCGGGCTCGCGGGAGCGACGACGGGACGCCGACTACGACTTCGCCGACCACGACTCCGACGATTCCGCGGAGCTCCTCTCGCACCGGCAGCAGGTGATCCCGGGTTCGCGCGCGCCCTGTGGGCGATGAGTGCTTTGGAATGGCGTGGGGTGGTGGGGGCGTAGCTCGTGGTTCGATCTGTCACGGGGTGGGAATGCCCGGAAATTGCAGGATCGTGAATCTAGGCGATCGATGGGAAGGTTTGCTGCCATGCTGCACGTATATGCTTCGTTGGTTGGTGGATTTTGATGTAGTCCGGGAGAATGATATTGCATTGGCTGCCATCCATAATCAATGCGTCGATGCTAGCTAGGACCTCTCTGAAACATTTATACATTTTTGCATTTATTTTTCTTACAGGAAGTGTGGGGATCCGAGATTTTTGGTGGTGTGGGCATAGTGTTGACGAATAAAATACATGTGGGGCAGTAGGCGTCTTATACTCTGTCATCAACAACTACATCATGTTCCATAGGACAATGTAAACTAATCACAGATTAGTGGATTTTGCATTCACAAAA]
consensusID : consensus_13169#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[TGATTTGAGCCAGGAGAACTGGTTTGGCAATGATCGCAAAAATTAGATGTTGTGCTGCAAACTGCGATGCAATGGTGGCTGATGGGCTGGAGAAACCCCTCAAGGTGCAATGTGCCCCAAATGTGTTGTGTTGAAATGCAACTGGACCGGGTGAGCCTGTGGAACGCCGCGCTGCATGCATGCAATGCTGAGTGTGCAATGCCTGGTGATGATGAAACTGCTGATGATGCGATGATGCTGGTGAACTGCTGTGGTGGTGTGTTGCTGATGGGGAAGTGAGCGCGTACTACAGATGTGCCCACCAATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAATTGCCAATTCTCCAAGGAAATTTATTCAAAA]
[+] EMBL BI803855 [TGATTTGAGCCAGGAGAACTGGTTTGGCAATGATCGCAAAAATTAGATGTTGTGCTGCAAACTGCGATGCAATGGTGGCTGATGGGCTGGAGAAACCCCTCAAGGTGCAATGTGCCCCAAATGTGTTGTGTTGAAATGCAACTGGACCGGGTGAGCCTGTGGAACGCCGCGCTGCATGCATGCAATGCTGAGTGTGCAATGCCTGGTGATGATGAAACTGCTGATGATGCGATGATGCTGGTGAACTGCTGTGGTGGTGTGTTGCTGATGGGGAAGTGAGCGCGTACTACAGATGTGCCCACCAATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAATTGCCAATTCTCCAAGGAAATTTATTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13169#0 ACTTCGCCGACCACGACTCCGACGATTCCGCGGAGCTCCTCTCGCACCGGCAGCAGCAAA 60
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 ATTACAGTATATTAAGTGAAGCCGATATACAACAGCGCCAAGAGGATGATATAAATAGGG 120
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 TTTCAACTGTTCTTTCAATTTCAAAGTCAGAAGCATGTGTTCTTCTTCGTAATTATAACT 180
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 GGAGTGTCAGTAAGGTGCATGATGAATGGTTTGCTGATGAAGAACATGTTCGTAAGGTTG 240
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 TTGGTTTTCCGGAAAAGCTCATCGAAATGCCAAATGACAGAGAATTGACATGTGGAATTT 300
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 GTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCCATCCGTTCTGTA 360
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 GTGCATGTTGGAGAGGTTATATTAGCACTTCTATAAATGATGGTCCAGGATGCTTGATGT 420
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 TAAGATGTCCTGATCCGTCCTGCACAGCTGCTGTTGGTCAAGATATGATCAATTCACTGG 480
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 CTGATGACGAGGATAGGGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATA 540
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ----------------------------------------------------GACGACTT 8
consensus_13169#0 ATAGGAAGACAAAATGGTGTCCTGCTCCTGGATGTGAATATGCTGTAGAATTTGTCATGG 600
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 CTACAGCGCCGGGGGAGCCGGGCTCGCGGGAGCGACGACGGGACGCCGACTACGACTTCG 68
consensus_13169#0 GCAGTGGTAGCTATGATGTGAAC-TGCAACTGTTCATACGGCTTTTGTTGGAACTGCACT 659
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 CCGACCACGACTCCGACGATTCCGCGGAGCTCCTCTCGCACCGGCAGCAGGTGATCCCGG 128
consensus_13169#0 GAGGAAGCTCATCGTCCGGTCGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGT 719
consensus_13169#1 ------GCTCATCGTCCGGTAGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGT 54
consensus_13169#3 --------------------------------------TGATTTGAGCCAGGAGAACTGG 22
consensus_13169#2 GTTCGCGCGCGCCCTGTGGGCGATGAGTGCTTTGGAATGGCGTGGGGTGGTGGGGGCGTA 188
* * * *
consensus_13169#0 GCGGAGTCTGAAAATATGAACTGGATTCTA--GCTAATTCAAAGCCTTGTCCTAAGTGCA 777
consensus_13169#1 GCGGAGTCTGAAAATATGAACTGGATTCTA--GCTAATTCAAAGCCTTGTCCTAAGTGCA 112
consensus_13169#3 TTTGGCAATGATCGCAAAAATTAGATGTTG--TGCTGCAAACTGCGATGCAATGGTGGCT 80
consensus_13169#2 GCTCGTGGTTCGATCTGTCACGGGGTGGGAATGCCCGGAAATTGCAGGATCGTGAATCTA 248
* * * * * ** *
consensus_13169#0 AGCGGCCCATTGAAAAAAACCAGGGATGCATGCACATTACATGCACACCTC--CATGCAA 835
consensus_13169#1 AGCGGCCCATTGAAAAAAACCAGGGATGCATGCACATTACATGCACACCTC--CATGCAA 170
consensus_13169#3 GATGGGCTGGAGAAACCCCTCAAGGTGCAATGTGCCCCAAATGTG---TTG--TGTTGAA 135
consensus_13169#2 GGCGATCGATGGGAAGGTTTGCTGCCATGCTGCACGT-ATATGCTTCGTTGGTTGGTGGA 307
* * * ** * ** * * *** * *
consensus_13169#0 ATTTGAGTTTTGCTGGCTGTGTCT-TGGTCCATGGTCGGAGCATGGAGAACGGACTGGTG 894
consensus_13169#1 ATTTGAGTTTTGCTGGCTGTGTCT-TGGTCCATGGTCGGAGCATGGAGAACGGACTGGTG 229
consensus_13169#3 ATGC-AACTGGACCGGGTGAGCCTGTGGAACGCCG-CGCTGCATGCATGCAATGCTGA-G 192
consensus_13169#2 TTTTGATGTAGTCCGGGAGAATGA-TATTGCATTGGCTGC-CATCCATAATCAATGCGTC 365
* * * * ** * * * * * *** *
consensus_13169#0 GATTTTATGCCTGTAACCGTTATGAGGCAGC--AAGGCAGGAAGGAGCGTATGA-TGAAT 951
consensus_13169#1 GATTTTATGCCTGTAACCGTTATGAGGCAGC--AAGGCAGGAAGGAGCGTATGA-TGAAT 286
consensus_13169#3 TGTGCAATGCCTG--GTGATGATGAAACTGCTGATGATGCGATGATGCTGGTGAACTGCT 250
consensus_13169#2 GATGC--TAGCTAGGACCTCTCTGAAACATTT----ATACATTTTTGCATTTATTTTTCT 419
* * ** *** * ** * *
consensus_13169#0 CTGAAAGGAGAAGAGAAATGGCAAAG--AACTCGCTTGAGAGATATACACACTATTATGA 1009
consensus_13169#1 CTGAAAGGAGAAGAGAAATGGCAAAG--AACTCGCTTGAGAGATATACACACTATTATGA 344
consensus_13169#3 GTGGTGGTGTGTTGCTGATGGGGAAGTGAGCGCGTACTACAGATGTGCCCACCA--ATGA 308
consensus_13169#2 TACAGGAAGTGTGGGGATCCGAGATTTTTGGTGGTGTGGGCATAGTGTTGACGA--ATAA 477
* * * * ** * ** *
consensus_13169#0 ACGGTGGGCAGCCAATCAGTCGTCGAGGCAAAAGGCATTAGGAGATCTGCTG-AGTTTGC 1068
consensus_13169#1 ACGGTGGGCAGCCAATCAGTCGTCGAGGCAAAAGGCATTAGGAGATCTGCTG-AGTTTGC 403
consensus_13169#3 AC--TGAGTTGTTGTAATGATGTTGTAACCT--TGTAATAATGAAT-TGCCA-ATTCTCC 362
consensus_13169#2 AATACATGTGGGGCAGTAGGCGTCTTATACTCTGTCATCAACAACTACATCATGTTCCAT 537
* * * * ** * * * *
consensus_13169#0 AAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGT 1128
consensus_13169#1 AAAACGACAAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAGTCACAGCTCAAGT 463
consensus_13169#3 AAGGAAATTTATTCAAAA------------------------------------------ 380
consensus_13169#2 AGGACAATGTAAACTAATCACAGATTAGTGGATTTTGCATTCACAAAA------------ 585
* * **
consensus_13169#0 TCATCATAGAGGCTTGGTTACAG------------------------------------- 1151
consensus_13169#1 TCATCATAGAGGCTTGGTTACAGGTTAGTTTTCATTGCCAAGTTTAGTTCTCTCATAAGC 523
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 --------------------------------------------ATTGTCGAATGTAGGA 1167
consensus_13169#1 CTCCTAGATCTCTCATGGGCGAGTTTAATAATTTCAATACGCAGATTGTCGAATGTAGGA 583
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 GGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAA 1227
consensus_13169#1 GGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAA 643
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 GACAGTTCTTTGAATATCTGCAAGGTGAGGCGGAATCAGGTTTGGAGCGGCTGCATCAAT 1287
consensus_13169#1 GACAGTTCTTTGAATATCTGCAAGGTGAGGCGGAATCAGGTTTGGAGCGGCTGCATCAAT 703
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 GTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATG 1347
consensus_13169#1 GTGCAGAGAAAGAACTTCAAGTATACCTTGAAGCAGAATCTCCCTCAAAAGATTTCAATG 763
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 ACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTG 1407
consensus_13169#1 ACTTCCGTACAAAGTTGGCTGGATTAACTAGTGTGACTCGCAATTATTTCGAGAACCTTG 823
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 TCCGGGCTTTGGAGACTGGATTAAATGATGTAGGTCCTTCCACTAGCCATGGTACATGCA 1467
consensus_13169#1 TCCGGGCTTTGGAGACTG------------------------------------------ 841
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 GCAAGAGCGCAACTTCGAAGAGTCTTGGCAGTAAAAGTAAGAGTAGCAAGAGCAGAGCAT 1527
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 CCAGTACCAGCTCCAAAACAGGTGGCTCGAGCCGTGGTGTCGATGAAAGCAACATTTGGA 1587
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 CGTGTGACCAGTGCACATATGCTAACCCCAGATCTGCCAGAAACTGCCAGGCTTGTAACA 1647
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 ACCAGCATCGATAGCATTACATAGCTATGGTTTTAGATCTCGACTCCATTGGTTGAGAAA 1707
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 CCTCTGGTTCAAACCTGGTGGTAAAGAACATATGCAAAGTTGAAGTTTTCAATGAACAGT 1767
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 GGAGCTGGCGTGAGGAGGTATTAGCAGAGAACTGTTGCATATGCAAATTAGATTTTCTCA 1827
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 ACTCATCATGTGCTATGGCTGAGAAACCTCAGGTCATTCCCAATTTTTTTAATCAACTGA 1887
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 CGGTATCCTTGAAGCCTCGCTCATCATCATCTAGTTCATCCTGTATATAACTCTATATCG 1947
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 ATATCTGTAACTCTTGTGTTGTTCTATGGAAGTAGCGCGTACTAGCAGATGTGCGCCACC 2007
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 AATGAACTGAGTTGTTGTAATGATGTTGTAACCTTGTAATAATGAATTGGCCAATTCTCA 2067
consensus_13169#1 ------------------------------------------------------------
consensus_13169#3 ------------------------------------------------------------
consensus_13169#2 ------------------------------------------------------------
consensus_13169#0 AGGAAATTTATTCATCCTGTTCCAGAATAAAGA 2100
consensus_13169#1 ---------------------------------
consensus_13169#3 ---------------------------------
consensus_13169#2 ---------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||