These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2512 fasta sequence [TTCTATGATGCAGGACGAGATATGCCTTTCATGCCATTAGAGGAGTATGAGCGGAGTATTGGACTATATGCACGTGAAGTTATTCTCTTGGACCGAGAACAAGATGAAGAGTTGGATGCAATCGCGTCTTCAGCACAAATATTGCTGTCTAATTTGAAAATGCCAAGCTGTTTTGTAGCTGATGAAGATGCAGGCCAGGACTTACTAAGGGCATCTGTGCTTGCTTTGTTTGTTTCTGACTGCTTT-GAGGTTGTGATAGAAGTGCTTCTCTCAGTAGAACACGGAGAGCTATTGTTAGCTTGAGAAAGGAGCAACCTTTTGTTTGCACTTGTTCTGCTGGGAGCATATGTGACAGCACTGAAGCATCTAAGCGGATCAATAATCTTTACGGCCACTTTGATTTTACTGGCCTGTGCGATAAATCAATACATATCATCAAAGAAAGGAGAAATTCAGGAATTGTACCGATAGGAGCACTGCAATTTGGTGTTTGTAGGCACCGAGCTGTCCTAATGAAGTACTTGTGCGATCGAGCAGACCCTCCAATTCCTTGTGAGCTTGTGCGGGGGCATCTTGACTACACACCTCATGCTTGGAATGTTGTTCCTGTTAGAAAAGGGAATACATGGGTAAGGATGATAGTGGATGCATGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACTCCACGGTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACTACAGCTTCTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTTGAATACAAGCTTCTCGCGGAAGTAAGAATGCTGGGTGCCCTAAGGAAGCACCAATCCATAGTGGAAATATATGGTCATCAGCTTTATTCTAAATGGGTTCAAGCTGATGATGATAAGGAATACAAGATATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGGGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGACCTGGCATTCTACATTGTACGAGAAGTTGCTTGTGCATTGTTGGAGCTGCACAAAAAGCTAGTTATTCATCGGGACATAAAAAGTGAGAATGTTTTGGTTGATCTGGATTTAGAGAGAAGTGATGGCACACCAGTAGTCAAACTCTCTGATTTCGACAACGCAATTCCTTTGCATTCTCTCTCCCACACATGCTGTATAGCTCACCTTGGGACATATCCACCCAATGTTTGTGTTGGTACACCATGCTGGATGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGGAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTTCGGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATGAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTCATGCAGAAAAACTAAGACTGTTGATAGATCTCTTCTACCAGTGCACTAAAGGAATTGCATCTGAGCGCCCAAAAGCTGAGGCGGTTTACAATTTACTGT-GCTCTCTACCCACATGCTATGACATGAGGTGAAAGTGTGGATCTTAAATCAGTATGACATAAGGTGAAAATGTGGATCTTGAATCAGGAACCT-GTTGATGAGACAGCCAGCCAGATCGGCCTGCGCCAGGATGGCAAGTTATGCTGGGTGGTTTTAGCAGGTCAACAGATCTGGCCTCGCTTGGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAGTGCTGGCGATGCGGAACACGAGAAATCCAACCAAAA-CCAAAGCCGGTGGCAGCATTGTTCTGAGTTCTCTGGAGTTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCCCGTTTCCCGCCTCTTGTGTTGCTGCGGTGTTGGCCTGACCATGTGTTGC-TTGTCGTGTCATTTGTTT-TTGTTTTTCA-TTAT-TGCGTTAATTTATTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCTGCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGTAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCATTTAAAGTTTCAACAATAGTACTCATGGCAGTTTATCATTTGTGTTAGTATCACATAGCATGCACTGTGTATGAGTGTATCCCTCCCTCCAGAGGAACAATGTACTATTCTCATTAAAACAGTTTCCCTGCATCAGTTAATAATATTCGTTGTGNGTGAAAAAAAAAAA] [+] EMBL AK102540 [TTCTATGATGCAGGACGAGATATGCCTTTCATGCCATTAGAGGAGTATGAGCGGAGTATTGGACTATATGCACGTGAAGTTATTCTCTTGGACCGAGAACAAGATGAAGAGTTGGATGCAATCGCGTCTTCAGCACAAATATTGCTGTCTAATTTGAAAATGCCAAGCTGTTTTGTAGCTGATGAAGATGCAGGCCAGGACTTACTAAGGGCATCTGTGCTTGCTTTGTTTGTTTCTGACTGCTTT GAGGTTGTGATAGAAGTGCTTCTCTCAGTAGAACACGGAGAGCTATTGTTAGCTTGAGAAAGGAGCAACCTTTTGTTTGCACTTGTTCTGCTGGGAGCATATGTGACAGCACTGAAGCATCTAAGCGGATCAATAATCTTTACGGCCACTTTGATTTTACTGGCCTGTGCGATAAATCAATACATATCATCAAAGAAAGGAGAAATTCAGGAATTGTACCGATAGGAGCACTGCAATTTGGTGTTTGTAGGCACCGAGCTGTCCTAATGAAGTACTTGTGCGATCGAGCAGACCCTCCAATTCCTTGTGAGCTTGTGCGGGGGCATCTTGACTACACACCTCATGCTTGGAATGTTGTTCCTGTTAGAAAAGGGAATACATGGGTAAGGATGATAGTGGATGCATGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACTCCACGGTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACTACAGCTTCTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTTGAATACAAGCTTCTCGCGGAAGTAAGAATGCTGGGTGCCCTAAGGAAGCACCAATCCATAGTGGAAATATATGGTCATCAGCTTTATTCTAAATGGGTTCAAGCTGATGATGATAAGGAATACAAGATATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGGGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGACCTGGCATTCTACATTGTACGAGAAGTTGCTTGTGCATTGTTGGAGCTGCACAAAAAGCTAGTTATTCATCGGGACATAAAAAGTGAGAATGTTTTGGTTGATCTGGATTTAGAGAGAAGTGATGGCACACCAGTAGTCAAACTCTCTGATTTCGACAACGCAATTCCTTTGCATTCTCTCTCCCACACATGCTGTATAGCTCACCTTGGGACATATCCACCCAATGTTTGTGTTGGTACACCATGCTGGATGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGGAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTTCGGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATGAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTCATGCAGAAAAACTAAGACTGTTGATAGATCTCTTCTACCAGTGCACTAAAGGAATTGCATCTGAGCGCCCAAAAGCTGAGGCGGTTTACAATTTACTGT GCTCTCTACCCACATGCTATGACATGAGGTGAAAGTGTGGATCTTAAATCAGTATGACATAAGGTGAAAATGTGGACCTTGAATCAGGAACCT GTTGATGAGACAGCCAGCCAGATCGGCCTGCGCCAGGATGGCAAGTTATGCTGGGTGGTTTTAGCAGGTCAACAGATCTGGCCTCGCTTGGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAGTGCTGGCGATGCGGAACACGAGAAATCCAACCAAAA CCAAAGCCGGTGGCAGCATTGTTCTGAGTTCTCTGGAGTTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCCCGTTTCCCGCCTCTTGTGTTGCTGCGGTGTTGGCCTGACCATGTGTTGC TTGTCGTGTCATTTGTTT TTGTTTTTCA TTAT TGCGTTAATTTATTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCTGCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGTAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCAT ] [+] EMBL CB657597 [ GCACGTGAAGTTATTCTCTTGGACCGAGAACAAGATGAAGAGTTGGATGCAATCGCGTCTTCAGCACAAATATTGCTGTCTAATTTGAAAATGCCAAGCTGTTTTGTAGCTGATGAAGATGCAGGCCAGGACTTACTAAGGGCATCTGTGCTTGCTTTGTTTGTTTCTGACTGCTTTGGAGGTTGTGATAGAAGTGCTTCTCTCAGTAGAACACGGAGAGCTATTGTTAGCTTGAGAAAGGAGCAACCTTTTGTTTGCACTTGTTCTGCTGGGAGCATATGTGACAGCACTGAAGCATCTAAGCGGATCAATAATCTTTACGGCCACTTTGATTTTACTGGCCTGTGCGATAAATCAATACATATCATCAAAGAAAGGAGAAATTCAGGAATTGTACCGATAGGAGCACTGCAATTTGGTGTTTGTAGGCACCGAGCTGTCCTAATGAAGTACTTGTGCGATCGAGCAGACCCTCCAATTCCTTGTGAGCTTGTGCGGGGGCATCTTGACTACACACCTCATGCTTGGAATGTTGTTCCTGTTAGAAAAGGGAATACATGGGTAAGGATGATAGTGGATGCATGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACTCCACGGTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACTACAGCTTCTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGG ] [+] EMBL CB638409 [ AGATGCAGGCCAGGACTTACTAAGGGCATCTGTGCTTGCTTTGTTTGTTTCTGACTGCTTTGGAGGTTGTGATAGAAGTGCTTCTCTCAGTAGAACACGGAGAGCTATTGTTAGCTTGAGAAAGGAGCAACCTTTTGTTTGCACTTGTTCTGCTGGGAGCATATGTGACAGCACTGAAGCATCTAAGCGGATCAATAATCTTTACGGCCACTTTGATTTTACTGGCCTGTGCGATAAATCAATACATATCATCAAAGAAAGGAGAAATTCAGGAATTGTACCGATAGGAGCACTGCAATTTGGTGTTTGTAGGCACCGAGCTGTCCTAATGAAGTACTTGTGCGATCGAGCAGACCCTCCAATTCCTTGTGAGCTTGTGCGGGGGCATCTTGACTACACACCTCATGCTTGGAATGTTGTTCCTGTTAGAAAAGGGAATACATGGGTAAGGATGATAGTGGATGCATGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAAGGTTATACTCCACGGTCTCCCTTTCCTTCTG ] [+] EMBL CF324459 [ TGGATGCATGCTACCCAACCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGGTATGTTCCACTCAGTCGGCTTCAGATCATACTTGATGATCAGGGTTATACTCCACGGTCTCCCTTTCCTTCTGTCTCACTGTGCAAAGAAATAGAAACTACAGCTTCTAGTTCAGTCTACTACTGCAAAATTGGTGCTGTTGATGCGGCAGCAAAGGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTAAAAATTTTGAATACAAGCTTCTCGCGGAAGTAAGAATGCTGGGTGCCCTAAGGAAGCACCAATCCATAGTGGAAATATATGGTCATCAGCTTTATTCTAAATGGGTTCAAGCTGATGATGATAAGGAATACAAGATATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTCTGAAGGGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGACCTGGCATTCTACATTGTACGAGAAGTTGCTTGTGCATTGTTGGAGCTGCACAAAAAGCTAGTTATTCATCG ] [+] EMBL AU055962 [ TACACCATGCTGGATGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGGAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTTCGGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATGAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTCATGCAGAAAAACTAAGACTGTTGATAGATCTCTTCTACCAGTGCACTAAAGGAATTGCATCTGAGCGCCCAAAAGCTGAGGCGGTTTACAATTTACTGTGGCTCTCTACCCACATGCTATGACATGAGGTGAAAGTGTGGATCTTAAATCAGTATGACATAAGGTGAAAATGTGGATCTTGAATCAGGAACCT GTTGATGAGACAGCCAGCCAGATCGGCCTGCGCCAGGATGGCAAGTTATGCTGGGTGGTTTTAGCAGGTCAACAGATCTGGCCTCGCTTGGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAGTGCTGGCGATGCGGAACACGAGAAATCCAACCAAAACCCAAAGCCGGTGGCAGCATTGTCCTGAGTTCNTGGGAGGTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCt ] [+] EMBL AK067800 [ AATATATGATCTCATAATGAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTCATGCAGAAAAACTAAGACTGTTGATAGATCTCTTCTACCAGTGCACTAAAGGAATTGCATCTGAGCGCCCAAAAGCTGAGGCGGTTTACAATTTACTGT GCTCTCTACCCACATGCTATGACATGAGGTGAAAGTGTGGATCTTAAATCAGTATGACATAAGGTGAAAATGTGGATCTTGAATCAGGAACCT GTTGATGAGACAGCCAGCCAGATCGGCCTGCGCCAGGATGGCAAGTTATGCTGGGTGGTTTTAGCAGGTCAACAGATCTGGCCTCGCTTGGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAGTGCTGGCGATGCGGAACACGAGAAATCCAACCAAAA CCAAAGCCGGTGGCAGCATTGTTCTGAGTTCTCTGGAGTTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCCCGTTTCCCGCCTCTTGTGTTGCTGCGGTGTTGGCCTGACCATGTGTTGC TTGTCGTGTCATTTGTTT TTGTTTTTCA TTAT TGCGTTAATTTATTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCTGCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGTAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCATTTAAAGTTTCAACAATAGTACTCATGGCAGTTTATCATTTGTGTTAGTATCACATAGCATGCACTGTGTATGAGTGTATCCCTCCCTCCAGAGGAACAATGTACTATTCTCATTAAAACAGTTTCCCTGCATCAGTTAATAATATTC ] [-] EMBL CB657598 [ TATATGATCTCATAATGAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTCATGCAGAAAAACTAAGACTGTTGATAGATCTCTTCTACCAGTGCACTAAAGGAATTGCATCTGAGCGCCCAAAAGCTGAGGCGGTTTACAATTTACTGT GCTCTCTACCCACATGCTATGACATGAGGTGAAAGTGTGGATCTTAAATCAGTATGACATAAGGTGAAAATGTGGATCTTGAATCAGGAACCT GTTGATGAGACAGCCAGCCAGATCGGCCTGCGCCAGGATGGCAAGTTATGCTGGGTGGTTTTAGCAGGTCAACAGATCTGGCCTCGCTTGGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAGTGCTGGCGATGCGGAACACGAGAAATCCAACCAAAA CCAAAGCCGGTGGCAGCATTGTTCTGAGTTCTCTGGAGTTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCCCGTTTCCCGCCTCTTGTGTTGCTGCGGTGTTGGCCTGACCATGTGTTGC TTGTCGTGTCATTTGTTT TTGTTTTTCA TTAT TGCGTTAATTTATTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCTGCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGTAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCATTAAAAaaaaga ] [-] EMBL CB628738 [ ATATGATCTCATAATGAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTCATGCAGAAAAACTAAGACTGTTGATAGATCTCTTCTACCAGTGCACTAAAGGAATTGCATCTGAGCGCCCAAAAGCTGAGGCGGTTTACAATTTACTGT GCTCTCTACCCACATGCTATGACATGAGGTGAAAGTGTGGATCTTAAATCAGTATGACATAAGGTGAAAATGTGGATCTTGAATCAGGAACCT GTTGATGAGACAGCCAGCCAGATCGGCCTGCGCCAGGATGGCAAGTTATGCTGGGTGGTTTTAGCAGGTCAACAGATCTGGCCTCGCTTGGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAGTGCTGGCGATGCGGAACACGAGAAATCCAACCAAAA CCAAAGCCGGTGGCAGCATTGTTCTGAGTTCTCTGGAGTTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCCCGTTTCCCGCCTCTTGTGTTGCTGCGGTGTTGGCCTGACCATGTGTTGC TTGTCGTGTCATTTGTTT TTGTTTTTCA TTAT TGCGTTAATTTATTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCTGCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGTAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCC ] [+] EMBL AU055963 [ GTGGCCCTTAAATCAGTATGACATAAGGTAAAAATGTGGATCTTGAATCAGGAACCTGGTTGATGAGACAGCCAGCCAGATCGGCTNGCGCCAGGATGGCAANTTATGCTGGGTGGTTTTAGCAGGTCAACAGATCTGGCCTCGCTTGGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAGTGCTGGCGATGCGGAACACGAGAAATCCAACCAAAA CCAAAGCCGGTGGCAGCATTGTTCTGAGTNCTCTGGAGTTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCTCGTTTCCCGCCTCTTGTGTTGCTGCGGTGTTGGCCTGACCATGTGTTGC TTGTCGTGTCATTTGTTT TTGTTTNTCA TTAT TGCGTTAATTTATTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCTGCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGTAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCATTTAAAGTTTCAACAATAGTACTCATGGCAGTTTATCATTTGTGTTAGTATCACATAGCATGCACTGTGTATGAGTGTATCCCTCCCTCCAGAGGAACAATGTACTATTCTCATTAAAACAGTTTCCCTGCATCAGTTAATAATATTCGTTGTGNGTGAAAAAAAAAAA] [+] EMBL BI807488 [ TTGCTGCGGTGTT GCCTGACCATGTGTTGCTTTGTCGTGTCATTTGTTTGTTGTTTTTCATTTATGTGCGTTAATTTATTGATTTA GCCATTCACAACCCCAAGGCGTCTGTCTGCTGCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGTAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCAaaaaaaaaa ] consensusID : consensus_13176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [CCGTTTAGAATNAGNGANCCCCCGGGGNGCAGGATTTGGCAAGNGGNCTCTTGTGGTGAGCGGGGTGGCCNGACCATGTGTTGCTNGTCGGTCAATGGTTTTTTGGTATTCATTANGCGTTNATTTANTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCNGGCAACAAGACCCATTCGGTATTNGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGNAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCATTTAAAGTTTCAACAATAGTACTCATGGCAGTTTATCATTTGTGTTAGTATCACATAGCATGCACTGTGTATGAGTGTATCCCTCCCTCCAGAGGAACAATGTACTATTCTCATTAAAACAGTTTCCCTGCATCAGTTAATAATATTCGTTGTGCGTGAACTGTACTCCAAAAAAAAAA] [-] EMBL AA752150 [CCGTTTAGAATNAGNGANCCCCCGGGGNGCAGGATTTGGCAAGNGGNCTCTTGTGGTGAGCGGGGTGGCCNGACCATGTGTTGCTNGTCGGTCAATGGTTTTTTGGTATTCATTANGCGTTNATTTANTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCNGGCAACAAGACCCATTCGGTATTNGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGTGATCCATGNAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCATTTAAAGTTTCAACAATAGTACTCATGGCAGTTTATCATTTGTGTTAGTATCACATAGCATGCACTGTGTATGAGTGTATCCCTCCCTCCAGAGGAACAATGTACTATTCTCATTAAAACAGTTTCCCTGCATCAGTTAATAATATTCGTTGTGCGTGAACTGTACTCCAAAAAAAAAA] consensusID : consensus_13176#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [GGCACACCAGTTAGTTCAAACTCTCTGGATTTCGACAACGCAATTCCTTTGCATTCTCTCTCCCACACATGCTGTATAGCTCACCTTGGGACATATCCACCCAATGTTTTGTGTTGGGTACACCCCATGCCCTGGATGGGCTCCAGAGGTTTCTTTCCGTGCCATTGCGGAAGACCAAAAACCCAAATTATTGGACCT] [+] EMBL CA753273 [GGCACACCAGTTAGTTCAAACTCTCTGGATTTCGACAACGCAATTCCTTTGCATTCTCTCTCCCACACATGCTGTATAGCTCACCTTGGGACATATCCACCCAATGTTTTGTGTTGGGTACACCCCATGCCCTGGATGGGCTCCAGAGGTTTCTTTCCGTGCCATTGCGGAAGACCAAAAACCCAAATTATTGGACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13176#0 TTCTATGATGCAGGACGAGATATGCCTTTCATGCCATTAGAGGAGTATGAGCGGAGTATT 60 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 GGACTATATGCACGTGAAGTTATTCTCTTGGACCGAGAACAAGATGAAGAGTTGGATGCA 120 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 ATCGCGTCTTCAGCACAAATATTGCTGTCTAATTTGAAAATGCCAAGCTGTTTTGTAGCT 180 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 GATGAAGATGCAGGCCAGGACTTACTAAGGGCATCTGTGCTTGCTTTGTTTGTTTCTGAC 240 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TGCTTTGAGGTTGTGATAGAAGTGCTTCTCTCAGTAGAACACGGAGAGCTATTGTTAGCT 300 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TGAGAAAGGAGCAACCTTTTGTTTGCACTTGTTCTGCTGGGAGCATATGTGACAGCACTG 360 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 AAGCATCTAAGCGGATCAATAATCTTTACGGCCACTTTGATTTTACTGGCCTGTGCGATA 420 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 AATCAATACATATCATCAAAGAAAGGAGAAATTCAGGAATTGTACCGATAGGAGCACTGC 480 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 AATTTGGTGTTTGTAGGCACCGAGCTGTCCTAATGAAGTACTTGTGCGATCGAGCAGACC 540 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 CTCCAATTCCTTGTGAGCTTGTGCGGGGGCATCTTGACTACACACCTCATGCTTGGAATG 600 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TTGTTCCTGTTAGAAAAGGGAATACATGGGTAAGGATGATAGTGGATGCATGCTACCCAA 660 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 CCAATATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGGTATGTTCCACTCAGTCGGC 720 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TTCAGATCATACTTGATGATCAGGGTTATACTCCACGGTCTCCCTTTCCTTCTGTCTCAC 780 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TGTGCAAAGAAATAGAAACTACAGCTTCTAGTTCAGTCTACTACTGCAAAATTGGTGCTG 840 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TTGATGCGGCAGCAAAGGTAAGATATCTAGACACTCGATGTGCTTCTAGTGATGAAGTTA 900 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 AAAATTTTGAATACAAGCTTCTCGCGGAAGTAAGAATGCTGGGTGCCCTAAGGAAGCACC 960 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 AATCCATAGTGGAAATATATGGTCATCAGCTTTATTCTAAATGGGTTCAAGCTGATGATG 1020 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 ATAAGGAATACAAGATATTACAGTCCACAATTATGATGGAGCATGTGAAAGGAGGGTCTC 1080 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TGAAGGGTTATTTGACAAAATTGCTGAAAGAGGGCAAGAAGCATGCACCTATTGACCTGG 1140 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 CATTCTACATTGTACGAGAAGTTGCTTGTGCATTGTTGGAGCTGCACAAAAAGCTAGTTA 1200 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TTCATCGGGACATAAAAAGTGAGAATGTTTTGGTTGATCTGGATTTAGAGAGAAGTGATG 1260 consensus_13176#2 -----------------------------------------------------------G 1 consensus_13176#1 ----------------------------------CCGTTTAGAATNAGNGANCCCCCGGG 26 * consensus_13176#0 GCACACCAGTAG--TCAAACTCTCTG-ATTTCGACAACGCAATTC--CTTTGCATTCTCT 1315 consensus_13176#2 GCACACCAGTTAGTTCAAACTCTCTGGATTTCGACAACGCAATTC--CTTTGCATTCTCT 59 consensus_13176#1 GNGCAGGATTTGGCAAGNGGNCTCTTGTGGTGAGCGGGGTGGCCNGACCATGTGTTGCTN 86 * ** * * **** * * * * ** ** consensus_13176#0 CTCCCACACATGCTGTATAGCTCACCTTGGGACATATCCACCCAATGTTT-GTGTTGG-- 1372 consensus_13176#2 CTCCCACACATGCTGTATAGCTCACCTTGGGACATATCCACCCAATGTTTTGTGTTGGGT 119 consensus_13176#1 GTCGGTCAATGGTTTTTTGGTATTCATTANG---CGTTNATTTANTGATTTAGGCCATTC 143 ** ** * * * * * * ** * * * * ** ** * consensus_13176#0 -TA-CACCATGC----TGGATGG-CTCCAGAGGTTCTT---CGTGCCAT-GCGAGA---C 1418 consensus_13176#2 ACA-CCCCATGCC--CTGGATGGGCTCCAGAGGTTTCTTTCCGTGCCATTGCGGAAGACC 176 consensus_13176#1 ACAACCCCAAGGCGTCTGTCTGCNGGCAACAAGACCCATTCGGTATTNGTATCTGTATCT 203 * * *** * ** ** * * * * ** consensus_13176#0 AAAAACCAATATGGACTGGAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATG 1478 consensus_13176#2 AAAAACCCAAATT-ATTGGACCT------------------------------------- 198 consensus_13176#1 GTATGTACAAGT--GTCGGTCCATCCGTGATCCATGNAACCCTCTACTGTTGAGTCATGT 261 * * * ** consensus_13176#0 CTTACACTTCGGATACCCTACCAGGGCCTACCTGATTCAGAAATATATGATCTCATAATG 1538 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 AACAATAACAGATACTGTTTTGAGGTTATTTATCATGAGGGATTGTTTTTCCATTTAAAG 321 consensus_13176#0 AGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAG 1598 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 TTTCAACAATAGTACTCATGGCAGTTTATCATTTGTGTTAGTATCACATAGCATGCACTG 381 consensus_13176#0 CCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTCATGCAGAAAAACTAAGACTG 1658 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 TGTATGAGTGTATCCCTCCCTCCAGAGGAACAATGTACTATTCTCATTAAAACAGTTTCC 441 consensus_13176#0 TTGATAGATCTCTTCTACCAGTGCACTAAAGGAATTGCATCTGAGCGCCCAAAAGCTGAG 1718 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 CTGCATCAGTTAATAATATTCGTTGTGCGTGAACTGTACTCCAAAAAAAAAA-------- 493 consensus_13176#0 GCGGTTTACAATTTACTGTGCTCTCTACCCACATGCTATGACATGAGGTGAAAGTGTGGA 1778 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TCTTAAATCAGTATGACATAAGGTGAAAATGTGGATCTTGAATCAGGAACCTGTTGATGA 1838 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 GACAGCCAGCCAGATCGGCCTGCGCCAGGATGGCAAGTTATGCTGGGTGGTTTTAGCAGG 1898 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TCAACAGATCTGGCCTCGCTTGGTTTGAACTTCTGACCAGCATGCCGCTTATTCTTTGAG 1958 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TGCTGGCGATGCGGAACACGAGAAATCCAACCAAAACCAAAGCCGGTGGCAGCATTGTTC 2018 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TGAGTTCTCTGGAGTTCATCCTGTGTCAGTTTTGTAGCAGCCAGCCCCGTTTCCCGCCTC 2078 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TTGTGTTGCTGCGGTGTTGGCCTGACCATGTGTTGCTTGTCGTGTCATTTGTTTTTGTTT 2138 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TTCATTATTGCGTTAATTTATTGATTTAGGCCATTCACAACCCCAAGGCGTCTGTCTGCT 2198 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 GCACATGACCCATTCTGTATTTGTATCTGTATCTGTATGTACAAGTGTCGGTCCATCCGT 2258 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 GATCCATGTAACCCTCTACTGTTGAGTCATGTAACAATAACAGATACTGTTTTGAGGTTA 2318 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TTTATCATGAGGGATTGTTTTTCCATTTAAAGTTTCAACAATAGTACTCATGGCAGTTTA 2378 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 TCATTTGTGTTAGTATCACATAGCATGCACTGTGTATGAGTGTATCCCTCCCTCCAGAGG 2438 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 AACAATGTACTATTCTCATTAAAACAGTTTCCCTGCATCAGTTAATAATATTCGTTGTGN 2498 consensus_13176#2 ------------------------------------------------------------ consensus_13176#1 ------------------------------------------------------------ consensus_13176#0 GTGAAAAAAAAAAA 2512 consensus_13176#2 -------------- consensus_13176#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||