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Oryza sativa
cluster # 13190 cluster # 13190       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13190#0 length = 1685 sequences # 10  
consensus_13190#1 length = 352 sequences # 1  
consensus_13190#2 length = 295 sequences # 1  

consensusID : consensus_13190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1685
fasta sequence
                              [GGCATCGCGCAGGTGAAGCTGTACGACACCGAGCCGACCGTGCTGCGGGCGCTGGCCAACACCGGCATCAAGGTGGTGGTCGCGCTGCCCAACGAGCAGCTGCTCGCCGCGGCGTCGCGCCCGTCGTACGCGCTCGCCTGGGTGCGCCGCAACGTCGCAGCGTACTACCCGGCCACGCAGATCCAGGGCATCGCCGTCGGGAACGAGGTGTTCGCCTCGGCCAAGAACCTCACGGCGCAGCTCGTCCCGGCGATGACCAACGTGCACGCCGCGCTGGCGAGGCTCAGCCTTGACAAGCCCGTCAAGGTGTCGTCCCCCATCGCGCTCACCGCGCTCGCCGGCTCGTACCCGCCGTCGGCCGGCGTGTTCCGGGAGGACCTCGCCCAGGCGGTCATGAAGCCCATGCTCGACTTCCTCGCGCAGACCGGCTCGTACCTCATGGTGAACGCGTACCCGTTCTTCGCGTACTCTGGCAATGCCGACGTCATCTCCCTCGACTACGCGC-TGTTCCGCCCCAACGCCGGCGTGC-TCGAC-TCCGGGAGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGCTCGACGCCGTGTTCACCGCGGTGAGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGACCGGGTGGCCGTCCAAGGGTGACGCCAAGGAGACCGGCG-CCGCGGCGGCCAACG-CGCGGC-C-TA-C-AAC-GGCAACCTGGTGCGCCGCGTCCTCTCCGGCAACGCCGGAACGCCGCGCCGCCCCGACGCCGACATGGACGTGTACCTCTTCGCTCTCTTCAACGAGAACCAGAAGCCCGGACCGACCTCCGAGCGCAACTACGGCGTGTTCTACCCGAACCAGCAGAAGGTCTACGACGTCGAGTTCGTCCTCGGCGGCAACTCCGCTGGCGGCGGCGGCAGCAGCGGCAAGGACAACGGCGGGCTCGGCTGGCAGGACAACGGCGGGGTAAACGCCGGCAATGCGCCGGCCGGCGCAGGCGGCGGCGTGAAGGCGACGTCGACCGGTGAGGCGTGGTGCGTGGCGAACGCCATGGCCGGGGAGGAGCGGCTGCAGAAGGCGCTGGACTACGCGTGCGGGCCGGGCGGCGCGGACTGCAAGGCCATCCAGCCCGGCGCGGCGTGCTTCGAGCCGAACACCATGGTCGCCCACGCCTCCTACGCCTTCAACGACTACTACCAGCGAAAGGGCCGCACCATTGGCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCAACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCGTCGACGGTCTGAACCGAAGCAACAGTAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAAAGAAAATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTGCTTTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACTATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTACTAAAAAAA]

[+] EMBL AK058571             [GGCATCGCGCAGGTGAAGCTGTACGACACCGAGCCGACCGTGCTGCGGGCGCTGGCCAACACCGGCATCAAGGTGGTGGTCGCGCTGCCCAACGAGCAGCTGCTCGCCGCGGCGTCGCGCCCGTCGTACGCGCTCGCCTGGGTGCGCCGCAACGTCGCAGCGTACTACCCGGCCACGCAGATCCAGGGCATCGCCGTCGGGAACGAGGTGTTCGCCTCGGCCAAGAACCTCACGGCGCAGCTCGTCCCGGCGATGACCAACGTGCACGCCGCGCTGGCGAGGCTCAGCCTTGACAAGCCCGTCAAGGTGTCGTCCCCCATCGCGCTCACCGCGCTCGCCGGCTCGTACCCGCCGTCGGCCGGCGTGTTCCGGGAGGACCTCGCCCAGGCGGTCATGAAGCCCATGCTCGACTTCCTCGCGCAGACCGGCTCGTACCTCATGGTGAACGCGTACCCGTTCTTCGCGTACTCTGGCAATGCCGACGTCATCTCCCTCGACTACGCGC TGTTCCGCCCCAACGCCGGCGTGC TCGAC TCCGGGAGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGCTCGACGCCGTGTTCACCGCGGTGAGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGACCGGGTGGCCGTCCAAGGGTGACGCCAAGGAGACCGGCG CCGCGGCGGCCAACGCCGCGGC C TA C AAC GGCAACCTGGTGCGCCGCGTCCTCTCCGGCAACGCCGGAACGCCGCGCCGCCCCGACGCCGACATGGACGTGTACCTCTTCGCTCTCTTCAACGAGAACCAGAAGCCCGGACCGACCTCCGAGCGCAACTACGGCGTGTTCTACCCGAACCAGCAGAAGGTCTACGACGTCGAGTTCGTCCTCGGCGGCAACTCCGCTGGCGGCGGCGGCAGCAGCGGCAAGGACAACGGCGGGCTCGGCTGGCAGGACAACGGCGGGGTAAACGCCGGCAATGCGCCGGCCGGCGCAGGCGGCGGCGTGAAGGCGACGTCGACCGGTGAGGCGTGGTGCGTGGCGAACGCCATGGCCGGGGAGGAGCGGCTGCAGAAGGCGCTGGACTACGCGTGCGGGCCGGGCGGCGCGGACTGCAAGGCCATCCAGCCCGGCGCGGCGTGCTTCGAGCCGAACACCATGGTCGCCCACGCCTCCTACGCCTTCAACGACTACTACCAGCGAAAGGGCCGCACCATTGGCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCAACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCGTCGACGGTCTGAACCGAAGCAACAGTAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAAAGAAAATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTGCTTTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACTATATGATTAACCTAAATCACTACTA                          ]
[+] EMBL AK102185             [GGCATCGCGCAGGTGAAGCTGTACGACACCGAGCCGACCGTGCTGCGGACGCTGGCCAACACCGGCATCAAGGTGGTGGTCGCGCTGCCCAACGAGCAGCTGCTCGCCGCGGCGTCGCGCCCGTCGTACGCGCTCGCCTGGGTGCGCCGCAACGTCGCAGCGTACTACCCGGCCACGCAGATCCAGGGCATCGCCGTCGGGAACGAGGTGTTCGCCTCGGCCAAGAACCTCACGGCGCAGCTCGTCCCGGCGATGACCAACGTGCACGCCGCGCTGGCGAGGCTCAGCCTTGACAAGCCCGTCAAGGTGTCGTCCCCCATCGCGCTCACCGCGCTCGCCGGCTCGTACCCGCCGTCGGCCGGCGTGTTCCGGGAGGACCTCGCCCAGGCGGTCATGAAGCCCATGCTCGACTTCCTCGCGCAGACCGGCTCGTACCTCATGGTGAACGCGTACCCGTTCTTCGCGTACTCTGGCAATGCCGACGTCATCTGCCTCGACTACGCGC TGTTCCGCCCCAACGCCGGCGTGC TCGAC TCCGGGAGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGCTCGACGCCGTGTTCACCGCGGTGAGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGACCGGGTGGCCGTCCAAGGGTGACGCCAAGGAGACCGGCG CCGCGGCGGCCAACGCCGCGGC C TA C AAC GGCAACCTGGTGCGCCGCGTCCTCTCCGGCAACGCCGGAACGCCGCGCCGCCCCGACGCCGACATGGACGTGTACCTCTTCGCTCTCTTCAACGAGAACCAGAAGCCCGGACCGACCTCCGAGCGCAACTACGGCGTGTTCTACCCGAACCAGCAGAAGGTCTACGACGTCGAGTTCGTCCTCGGCGGCAACTCCGCTGGCGGCGGCGGCAGCAGCGGCAAGGACAACGGCGGGCTCGGCTGGCAGGACAACGGCGGGGTAAACGCCGGCAATGCGCCGGCCGGCGCAGGCGGCGGCGTGAAGGCGACGTCGACCGGTGAGGCGTGGTGCGTGGCGAACGCCATGGCCGGGGAGGAGCGGCTGCAGAAGGCGCTGGACTACGCGTGCGGGCCGGGCGGCGCGGACTGCAAGGCCATCCAGCCCGGCGCGGCGTGCTTCGAGCCGAACACCATGGTCGCCCACGCCTCCTACGCCTTCAACGACTACTACCAGCGAAAGGGCCGCACCATTGGCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCAACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCGTCGACGGTCTGAACCGAAGCAACAGTAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAAAGAAAATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTGCTTTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACTATATGATTAACCTAAATCACTACTA                          ]
[+] EMBL AU056269             [                                                                                                                                                                                                                       cnggaCCAAGAACCTCACGGCGCA NTCGTCCCGGCGATGACCAACGTGCACGCCGCGCTGGCGAGGCTCAGCCTTGACAAGCCCGTCAAGGTGTCGTCCCCCATCGCGCTCACCGCGCTCGCCGGCTCGTACCCGCCGTCGGCCGGCGTGTTCCGGGAGGACCTCGCCCAGGCGGTCATGAAGCCCATGCTCGACTTCCTCGCGCAGACCGGCTCGTACCTCATGGTGAACGCGTACCCGTTCTTCGCGTACTCTGGCAATGCCGACGTCATCTCCCTCGACTACGCGC TGTTCCGCCCCAACGCCGGCGTGC TCGAC TCCGGGAGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGCTCGACGCCGTGTTCACCGCGGTGAGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGACCGGGTGGCCGTCCAAGGGTGACGCCAAGGAGACCGGNG CCGCGGCGGCCAACG CGGGGC CTTA C AAC GGCAACCTGGTGCGCCGCGTCCTCTCCGGCAACG CGNAACGCCGCGCCGCCCCGACGCCGACATGGACGTGTA CTCTTCG TCT TTCAACGAGAACCAGAAGCCCGGACCGACCTCCGAGCGCAACTACGGCGTGTTCTAGCCGAACCAGCAGAAGGTCTANGAAGTCGAag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU064259             [                                                                                                                                                                                                                                                                                   GGCGAGGCTCAGCCTTGACAAGCCCGTCAAGGTGTCGTCCCCCATCGCGCTCACCGCGCTCGCCGGCTCGTACCCGCCGTCGGCCGGCGTGTTCCGGGAGGACCTCGCCCAGGCGGTCATGAAGCCCATGCTCGACTTCCTCGCGCAGACCGGCTCGTACCTCATGGTGAACGCGTACCCGTTCTTCGCGTACTCTGGCAATGCCGACGTCATCTCCCTCGACTACGCGCTTGTTCCGCCCCAACGCCGGCGTGCTTCGACTTNCGGGAGCGGCCTCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU094721             [                                                                                                                                                                                                                                                                                   GGCGAGGCTCAGCCTTGACAAGCCCGTCAAGGTGTCGTCCCCCATCGCGCTCACCGCGCTCGCCGGCTCGTACCCGCCGTCGGCCGGCGTGTTCCGGGAGGACCTCGCCCANGCGGGGNTGAAGCCCATGCTCGACTTCCTCGCGCAGACCGGCTCGTACCTCATGGTGAACGCGTACCCGTTCTTCGCGTACTCTGGCAATGCCGACGTCATCTCCCTCGACTACGCGC TGTTCCGCCCCAACGCCGGCGTGC TCGAC TCCGGGAGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGCTCGACGCCGTGTTCACCGCGGTGAGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGACCGGGTGGCCGTCCAAGGGTGACGCCAAGGAGACCGGCG CCGCGGCGGCCAACG NNCGGC T TA C AAC GGCAACCTGGTGCGCCGCGT CTCTCCGGCAACGCNGAAACGCCGCGCCGCCCCGACGCCGACATGGACGTGTAACTCTTCGCTCTCTTCAACGAGAACCAGAAGCCCGGAACGACCTCCGAGCGCAACTACGGCGTGTT TACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSS12265A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTCTTCGCGTACTCTGGCAATGCCGACGTCATCTCCCTCGACTACGCGC TGTTCCGCCCCAACGCCGGCGTGC TCGAC TCCGGGAGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGCTCGACGCCGTGTTCACCGCGGTGAGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGACCGGGTGGCCGTCCAAGGGTGACGCCAAGGAGACCGGCG CCGCGGCGGCCAACG  G GGCNT TANCAAACGGGCAACCTGGTGCGCCGCGTCCTCTTCGGCAACG CGAAACGCCGCGCCGCCCCGACGGCGACATTGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSS11960A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTCTTCGCGTACTCTGGCAATGCCGACGTCATCTCCCTCGACTACGCGC TGTTCCGCCCCAACGCCGGCGTGC TCGAC TCCGGGAGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGNTCGACGCCGTGTTCACCGCGGTGAGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGA CGGGTGGCCGTCCAAGGGTNACGCCAAGGAGACCGGCGACNGCGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU056270             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTCGCCGCCCGCCGCANGCGGCGGCCNTAAGGCGACGTCGACCGGTGAGGCGTGGTGCGTGGCGAACGCCATGGCCGGGGAGGAGCGGCTGCAGAAGGCGCTGGACTACGCGTGCGGGCCGGGCGGCGCGGACTNCAAGGCCATCCAGCCCGGCGCGGCGTGCTTCGAGCCGAACACCATGGTCGCCCACGCCTCCTACGCCTTCAACGACTACTACCAGCGAAAGGGCCGCACCATTGGCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCAACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCGTCGACGGTCTGAACCGAAGCAACAGTAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAAAGAAAATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTGCTTTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACTATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTACTAAAAAAA]
[+] EMBL AU094666             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ctTGCGGCCCGGCCGGCGCGGACTGCAAGGCCANCCAGCCCGGCGCGGCGTGCTTCGAGCCGAACACCATGNTCGCCCACGCCT CTACGCCTTNAACGACTATTACCAGCGAAAGGNCCGCACCATTGGCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCAACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCGTCGACGGTCTGAACCGAAGCAACAGTAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAAAGAAAATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTGCTTTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACTATATGATTAACCTAAATCAaaaa                            ]
[+] EMBL C99653               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCGGACTGCAAGGCCATCCAGCCCGGCGCGGCGTGCTTCGAGCCGAACACCATGGTCGCCCACGCCTCCTACGCCTTCAACGACTACTACCAGCGAAAGGGCCGCACCATTGGCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCAACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCGTCGACGGTCTGAACCGAAGCAACAGTAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAAAGAAAATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTGCTTTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACTATATGATTAACCTAAATCAaaaa                            ]


>consensus_13190#0 GGCATCGCGCAGGTGAAGCTGTACGACACCGAGCCGACCGTGCTGCGGGCGCTGGCCAAC ACCGGCATCAAGGTGGTGGTCGCGCTGCCCAACGAGCAGCTGCTCGCCGCGGCGTCGCGC CCGTCGTACGCGCTCGCCTGGGTGCGCCGCAACGTCGCAGCGTACTACCCGGCCACGCAG ATCCAGGGCATCGCCGTCGGGAACGAGGTGTTCGCCTCGGCCAAGAACCTCACGGCGCAG CTCGTCCCGGCGATGACCAACGTGCACGCCGCGCTGGCGAGGCTCAGCCTTGACAAGCCC GTCAAGGTGTCGTCCCCCATCGCGCTCACCGCGCTCGCCGGCTCGTACCCGCCGTCGGCC GGCGTGTTCCGGGAGGACCTCGCCCAGGCGGTCATGAAGCCCATGCTCGACTTCCTCGCG CAGACCGGCTCGTACCTCATGGTGAACGCGTACCCGTTCTTCGCGTACTCTGGCAATGCC GACGTCATCTCCCTCGACTACGCGCTGTTCCGCCCCAACGCCGGCGTGCTCGACTCCGGG AGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGCTCGACGCCGTGTTCACCGCGGTG AGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGACCGGGTGGCCGTCC AAGGGTGACGCCAAGGAGACCGGCGCCGCGGCGGCCAACGCGCGGCCTACAACGGCAACC TGGTGCGCCGCGTCCTCTCCGGCAACGCCGGAACGCCGCGCCGCCCCGACGCCGACATGG ACGTGTACCTCTTCGCTCTCTTCAACGAGAACCAGAAGCCCGGACCGACCTCCGAGCGCA ACTACGGCGTGTTCTACCCGAACCAGCAGAAGGTCTACGACGTCGAGTTCGTCCTCGGCG GCAACTCCGCTGGCGGCGGCGGCAGCAGCGGCAAGGACAACGGCGGGCTCGGCTGGCAGG ACAACGGCGGGGTAAACGCCGGCAATGCGCCGGCCGGCGCAGGCGGCGGCGTGAAGGCGA CGTCGACCGGTGAGGCGTGGTGCGTGGCGAACGCCATGGCCGGGGAGGAGCGGCTGCAGA AGGCGCTGGACTACGCGTGCGGGCCGGGCGGCGCGGACTGCAAGGCCATCCAGCCCGGCG CGGCGTGCTTCGAGCCGAACACCATGGTCGCCCACGCCTCCTACGCCTTCAACGACTACT ACCAGCGAAAGGGCCGCACCATTGGCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCA ACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCGTCGACGGTCTGAACCGAAGCAACAG TAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAA AGAAAATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTG CTTTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACT CCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTT TTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAG TATGGAGTATTACTATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTACTAA AAAAA



consensusID : consensus_13190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence
                              [AACAGTAGCGAAAGNCTGAAGAAGAGNAGCGGCAGTCAGCCATNTCGGGATGCGAGGATTTATGAAAGAAAATNGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTGCTTTGCTTTTCCAGTTTNCCTCCCTTTCTTTACCTNTGGTGCTGTGCCCGCTGNTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTTTTTNCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTNCTATATGATTAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU102173             [AACAGTAGCGAAAGNCTGAAGAAGAGNAGCGGCAGTCAGCCATNTCGGGATGCGAGGATTTATGAAAGAAAATNGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTGCTTTGCTTTTCCAGTTTNCCTCCCTTTCTTTACCTNTGGTGCTGTGCCCGCTGNTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTTTTTNCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTNCTATATGATTAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13190#1 AACAGTAGCGAAAGNCTGAAGAAGAGNAGCGGCAGTCAGCCATNTCGGGATGCGAGGATT TATGAAAGAAAATNGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAA TCTTTGCTTTGCTTTTCCAGTTTNCCTCCCTTTCTTTACCTNTGGTGCTGTGCCCGCTGN TTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTC TTTCTTTTTNCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACG CTGGAGTATGGAGTATTNCTATATGATTAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13190#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence
                              [AGAGCGAGACAAGGGGGGAAAAGAAGCAGAGATGTTGGAATCTTTGCTCTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAACCAGATAACTGTAGAAGCTGTACCTCTTCCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACTATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTNCTAAAAAAAAAAA]

[-] EMBL CA760596             [AGAGCGAGACAAGGGGGGAAAAGAAGCAGAGATGTTGGAATCTTTGCTCTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTTGCTGCGGCGTAGAACCAGATAACTGTAGAAGCTGTACCTCTTCCTTTTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACTATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTNCTAAAAAAAAAAA]


>consensus_13190#2 AGAGCGAGACAAGGGGGGAAAAGAAGCAGAGATGTTGGAATCTTTGCTCTTCTTTTCCAG TTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACTCCTGCTGCATGTTT GCTGCGGCGTAGAACCAGATAACTGTAGAAGCTGTACCTCTTCCTTTTTGCAGCTTTGGC TAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAGTATGGAGTATTACT ATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTNCTAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13190#0      GGCATCGCGCAGGTGAAGCTGTACGACACCGAGCCGACCGTGCTGCGGGCGCTGGCCAAC 60
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      ACCGGCATCAAGGTGGTGGTCGCGCTGCCCAACGAGCAGCTGCTCGCCGCGGCGTCGCGC 120
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      CCGTCGTACGCGCTCGCCTGGGTGCGCCGCAACGTCGCAGCGTACTACCCGGCCACGCAG 180
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      ATCCAGGGCATCGCCGTCGGGAACGAGGTGTTCGCCTCGGCCAAGAACCTCACGGCGCAG 240
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      CTCGTCCCGGCGATGACCAACGTGCACGCCGCGCTGGCGAGGCTCAGCCTTGACAAGCCC 300
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      GTCAAGGTGTCGTCCCCCATCGCGCTCACCGCGCTCGCCGGCTCGTACCCGCCGTCGGCC 360
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      GGCGTGTTCCGGGAGGACCTCGCCCAGGCGGTCATGAAGCCCATGCTCGACTTCCTCGCG 420
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      CAGACCGGCTCGTACCTCATGGTGAACGCGTACCCGTTCTTCGCGTACTCTGGCAATGCC 480
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      GACGTCATCTCCCTCGACTACGCGCTGTTCCGCCCCAACGCCGGCGTGCTCGACTCCGGG 540
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      AGCGGCCTCAAGTACTACAGCCTCCTCGACGCCCAGCTCGACGCCGTGTTCACCGCGGTG 600
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      AGCAAGCTTGGGAACTACAATGCCGTGCGCGTCGTGGTGTCGGAGACCGGGTGGCCGTCC 660
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      AAGGGTGACGCCAAGGAGACCGGCGCCGCGGCGGCCAACGCGCGGCCTACAACGGCAACC 720
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      TGGTGCGCCGCGTCCTCTCCGGCAACGCCGGAACGCCGCGCCGCCCCGACGCCGACATGG 780
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      ACGTGTACCTCTTCGCTCTCTTCAACGAGAACCAGAAGCCCGGACCGACCTCCGAGCGCA 840
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      ACTACGGCGTGTTCTACCCGAACCAGCAGAAGGTCTACGACGTCGAGTTCGTCCTCGGCG 900
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      GCAACTCCGCTGGCGGCGGCGGCAGCAGCGGCAAGGACAACGGCGGGCTCGGCTGGCAGG 960
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      ACAACGGCGGGGTAAACGCCGGCAATGCGCCGGCCGGCGCAGGCGGCGGCGTGAAGGCGA 1020
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      CGTCGACCGGTGAGGCGTGGTGCGTGGCGAACGCCATGGCCGGGGAGGAGCGGCTGCAGA 1080
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      AGGCGCTGGACTACGCGTGCGGGCCGGGCGGCGCGGACTGCAAGGCCATCCAGCCCGGCG 1140
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      CGGCGTGCTTCGAGCCGAACACCATGGTCGCCCACGCCTCCTACGCCTTCAACGACTACT 1200
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      ACCAGCGAAAGGGCCGCACCATTGGCACCTGCGACTTCGCCGGCGCCGCCTACGTCGTCA 1260
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------------
                                                                                   

consensus_13190#0      ACCAAGCGCCAAAGATGGGCAAGTGTGAGCTCCCGTCGACGGTCTGAACCGAAGCAACAG 1320
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      ------------------------------------------------------AACAGT 6
                                                                                   

consensus_13190#0      TAGCGAAAGACTGAAGAAGAGCAGCGGCAGCAGCCATCTCGGGATGCGAGGATTTATGAA 1380
consensus_13190#2      ------------------------------------------------------------
consensus_13190#1      AGCGAAAGNCTGAAGAAGAGNAGCGGCAGTCAGCCATNTCGGGATGCGAGGATTTATGAA 66
                                                                                   

consensus_13190#0      AGAAAATCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTG 1440
consensus_13190#2      --------------AGAGCGAGACAAGGGGGGAAAAGAAGCAGAGATGTTGGAATCTTTG 46
consensus_13190#1      AGAAAATNGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGATGTTGGAATCTTTG 126
                                      *  *     **** ********* *********************

consensus_13190#0      CTTTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACT 1500
consensus_13190#2      CTCTTCTTTTCCAGTTTTCCTCCCTTTCTTTACCTGTGGTGCTGTGCCCGCTGCTTGACT 106
consensus_13190#1      CTTTGCTTTTCCAGTTTNCCTCCCTTTCTTTACCTNTGGTGCTGTGCCCGCTGNTTGACT 186
                       ** * ************ ***************** ***************** ******

consensus_13190#0      CCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTT 1560
consensus_13190#2      CCTGCTGCATGTTTGCTGCGGCGTAGAACCAGATAACTGTAGAAGCTGTACCTCTTCCTT 166
consensus_13190#1      CCTGCTGCATGTTTGCTGCGGCGTAGAAACAGATTACTGTAGTAGCTGTACCTCTTTCTT 246
                       **************************** ***** ******* ************* ***

consensus_13190#0      TTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAG 1620
consensus_13190#2      TTTGCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAG 226
consensus_13190#1      TTTNCAGCTTTGGCTAATGGTGGGGGATATCTTTGTTTAGTCCATGTAACTACGCTGGAG 306
                       *** ********************************************************

consensus_13190#0      TATGGAGTATTACTATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTACTAA 1680
consensus_13190#2      TATGGAGTATTACTATATGATTAACCTAAATCACTACTATTATAGACTGATTTGTNCTAA 286
consensus_13190#1      TATGGAGTATTNCTATATGATTAAAAAAAAAAAAAAAAAAAAAAAA-------------- 352
                       *********** ************   ***  *  *  *  * * *              

consensus_13190#0      AAAAA---- 1685
consensus_13190#2      AAAAAAAAA 295
consensus_13190#1      ---------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)