These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 810 fasta sequence [TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAAAAA] [+] EMBL AK062718 [TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAgggtca ] [+] EMBL BP184764 [ AAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACC AAATATT ] [+] EMBL OSR18381A [ TTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACC ] [+] EMBL AU184465 [ TCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCT ] [+] EMBL OSR23401A [ CATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGNTTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGNGGTTAGGNAGTTCAAAGGGGAAGGAATGCCATTNTACCNGNGCAACAAGNAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCNGAAGTCCAAGCTGAAGNGC ] [+] EMBL OSR21091A [ GAGGAAGGAGAGCCTAAGATTNATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATNTCCCTGCTCCAAGCTCTGGTCGGNTTCGNGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACANGAAAGGCGACCTATATGTAACTTTCGNGGTTTTATTNCCGAAAACC ] [+] EMBL CF330564 [ CAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAG ] [+] EMBL AU031803 [ ATATGTNACTTTCGAGGTTTTATTCCCGAAANCCCTAACCGACGNCCAGAAGTCCAAGCTGNAGAGCATTCTCACATAACCGAAGGCCCAGGTTTNCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA ] [+] EMBL AU184466 [ AGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA ] [+] EMBL AU184377 [ TTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA ] [+] EMBL CA757687 [ GTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTCTTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTTCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAAAAA] consensusID : consensus_13192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [GCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU223300 [GCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13192#0 TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATG 60 consensus_13192#1 ------------------------------------------------------------ consensus_13192#0 GGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATT 120 consensus_13192#1 ------------------------------------------------------------ consensus_13192#0 TGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGC 180 consensus_13192#1 ------------------------------------------------------------ consensus_13192#0 ACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGC 240 consensus_13192#1 ------------------------------------------------------------ consensus_13192#0 ATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTA 300 consensus_13192#1 ------------------------------------------------------------ consensus_13192#0 GGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATG 360 consensus_13192#1 ------------------------------------------------------------ consensus_13192#0 TAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGA 420 consensus_13192#1 ------------------------------------------------------------ consensus_13192#0 GCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTC 480 consensus_13192#1 ------------------------------------------------------------ consensus_13192#0 ATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCA 540 consensus_13192#1 ----------------------------------------------GCTTACAAGCACCA 14 ************** consensus_13192#0 GCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTT 600 consensus_13192#1 GCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTT 74 ************************************************************ consensus_13192#0 AATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACC-GGGTGTAGCATTTAG 659 consensus_13192#1 AATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAG 134 ******************************************** *************** consensus_13192#0 GAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATG 719 consensus_13192#1 GAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATG 194 ************************************************************ consensus_13192#0 GTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGT 779 consensus_13192#1 GTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 240 **************** * ***** * * * consensus_13192#0 AAAATTAAATGGAATTTAAGTCAAAAAAAAA 810 consensus_13192#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||