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Oryza sativa
cluster # 13192 cluster # 13192       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13192#0 length = 810 sequences # 11  
consensus_13192#1 length = 240 sequences # 1  

consensusID : consensus_13192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 810
fasta sequence
                              [TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAAAAA]

[+] EMBL AK062718             [TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAgggtca  ]
[+] EMBL BP184764             [                                                      AAGATGGGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACC AAATATT                                                                                                                     ]
[+] EMBL OSR18381A            [                                                                      TTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU184465             [                                                                       TCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCT                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSR23401A            [                                                                        CATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGNTTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGNGGTTAGGNAGTTCAAAGGGGAAGGAATGCCATTNTACCNGNGCAACAAGNAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCNGAAGTCCAAGCTGAAGNGC                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR21091A            [                                                                                GAGGAAGGAGAGCCTAAGATTNATGGTGAACCTGGAGATTTGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGCACACAACTGTTACAATNTCCCTGCTCCAAGCTCTGGTCGGNTTCGNGAAGACCATTAAGCATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTAGGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACANGAAAGGCGACCTATATGTAACTTTCGNGGTTTTATTNCCGAAAACC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF330564             [                                                                                                                                                                                                                                                                                                                                            CAGAGCAACAAGAAAGGCGACCTATATGTAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAG                                                                                                                                                                                                                                                                             ]
[+] EMBL AU031803             [                                                                                                                                                                                                                                                                                                                                                                   ATATGTNACTTTCGAGGTTTTATTCCCGAAANCCCTAACCGACGNCCAGAAGTCCAAGCTGNAGAGCATTCTCACATAACCGAAGGCCCAGGTTTNCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA   ]
[+] EMBL AU184466             [                                                                                                                                                                                                                                                                                                                                                                                 AGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA   ]
[+] EMBL AU184377             [                                                                                                                                                                                                                                                                                                                                                                                     TTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGAGCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTCATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAA   ]
[+] EMBL CA757687             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTCTTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTACACTTTCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTAAAATTAAATGGAATTTAAGTCAAAAAAAAA]


>consensus_13192#0 TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATG GGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATT TGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGC ACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGC ATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTA GGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATG TAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGA GCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTC ATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCA GCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTT AATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCGGGTGTAGCATTTAGG AAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGG TAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGTA AAATTAAATGGAATTTAAGTCAAAAAAAAA



consensusID : consensus_13192#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence
                              [GCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU223300             [GCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATGGTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13192#1 GCTTACAAGCACCAGCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAG CAGTTCAGCAGTTTAATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCG GGTGTAGCATTTAGGAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGA AGAATATATTGATGGTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13192#0      TGAAGTATGTGCGAGAAGGTGATTTTTTGACTGTTGATATTGAGAAAGGAATGCAAGATG 60
consensus_13192#1      ------------------------------------------------------------
                                                                                   

consensus_13192#0      GGCAGGAAGTTTCATTCTTTGAGGAAGGAGAGCCTAAGATTGATGGTGAACCTGGAGATT 120
consensus_13192#1      ------------------------------------------------------------
                                                                                   

consensus_13192#0      TGAAGTTTAGGATCCGAACAGCACCACATGAGCGATTCAGAAGAGAAGGCAATGACCTGC 180
consensus_13192#1      ------------------------------------------------------------
                                                                                   

consensus_13192#0      ACACAACTGTTACAATCTCCCTGCTCCAAGCTCTGGTCGGCTTCGAGAAGACCATTAAGC 240
consensus_13192#1      ------------------------------------------------------------
                                                                                   

consensus_13192#0      ATCTGGACAATCATATGGTGGAAATTGGCACCAAGGGGATCACCAAACCCAAGGAGGTTA 300
consensus_13192#1      ------------------------------------------------------------
                                                                                   

consensus_13192#0      GGAAGTTCAAAGGGGAAGGAATGCCATTGTACCAGAGCAACAAGAAAGGCGACCTATATG 360
consensus_13192#1      ------------------------------------------------------------
                                                                                   

consensus_13192#0      TAACTTTCGAGGTTTTATTCCCGAAAACCCTAACCGACGACCAGAAGTCCAAGCTGAAGA 420
consensus_13192#1      ------------------------------------------------------------
                                                                                   

consensus_13192#0      GCATTCTCACATAACCGAAGGCCCAGGTTTTCGCTTTTATGCTGCAGCTAGTTCGTTCTC 480
consensus_13192#1      ------------------------------------------------------------
                                                                                   

consensus_13192#0      ATTTGAGGTGGGAAGGAAAACTGCCTCAAAAAAGGAAATTTTCCCAGCTTACAAGCACCA 540
consensus_13192#1      ----------------------------------------------GCTTACAAGCACCA 14
                                                                     **************

consensus_13192#0      GCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTT 600
consensus_13192#1      GCAGCTGCCTTTTCTGTGGGTGTGATTTTGCGTTGGTAATTGTTAGCAGTTCAGCAGTTT 74
                       ************************************************************

consensus_13192#0      AATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACC-GGGTGTAGCATTTAG 659
consensus_13192#1      AATTTCTCTTTTACCTTATTTTGTTTCTCATGTCATTAACAACCCGGGTGTAGCATTTAG 134
                       ******************************************** ***************

consensus_13192#0      GAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATG 719
consensus_13192#1      GAAGTTGGATGATCATGAGCTGTACCAAAATATTTGTATTGCTGGAAGAATATATTGATG 194
                       ************************************************************

consensus_13192#0      GTAGAATTGTAGCTTACACTTCCCAAAAATGTATTTACTGGTTGTACAACAGTCAGCAGT 779
consensus_13192#1      GTAGAATTGTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 240
                       **************** *      *****   *   *        *              

consensus_13192#0      AAAATTAAATGGAATTTAAGTCAAAAAAAAA 810
consensus_13192#1      -------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)