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Oryza sativa
cluster # 13195 cluster # 13195       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13195#0 length = 1525 sequences # 8  
consensus_13195#1 length = 941 sequences # 2  
consensus_13195#2 length = 530 sequences # 2  

consensusID : consensus_13195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1525
fasta sequence
                              [CCGGGAGGGGGGCGTGGTGGAGGACGAAGGCGACGGTGGCAAAATCGGCGACGGCGACGGCGGCGGCGGCGGCGATGGCGAAGGGGAGGGACGCGCGGTGGGAGTAGATACTGTAGTCGTGCGTGCTCCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAACCCAGATCCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCGCCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCGCCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACCAGTTGCTCGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGTGGACTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATT-GAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGCCA-ATCTCAAGGGAGCTAAGTTGGCCGGTACA-AACTTGGAATGTGCAAATCTTCAGCGAGCCTACTTGCGAGAAGTTGATTTGCGCGAAACTCATTTAACTGGTGCTAAGCTTGGAGGTGCAAATCTGCTTGGAGCTATCAGATAATACCA-AGGGAAGAAGCTTATATCTTCTACATTTACAATTAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTTGTTCATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGGCGGTTGTACATATACCCTT-G-TCACATTCCTCTGATTCGAAAATTCGGTGATGAACTGTTGGATACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTCTAGTAGGAAAATTTCCTGCATACTTTGGGATATTGTTGTGAACAATGACTGAAAATTTTAGTGGGA-AATATATCTTCGTTAATGTGCAAAAAAAAAAAAAAAAAA]

[+] EMBL AK073432             [CCGGGAGGGGGGCGTGGTGGAGGACGAAGGCGACGGTGGCAAAATCGGCGACGGCGACGGCGGCGGCGGCGGCGATGGCGAAGGGGAGGGACGCGCGGTGGGAGTAGATACTGTAGTCGTGCGTGCTCCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAACCCAGATCCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCGCCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCGCCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACCAGTTGCTCGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGTGGACTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATT GAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGCCA ATCTCAAGGGAGCTAAGTTGGCCGGTACA AACTTGGAATGTGCAAATCTTCAGCGAGCCTACTTGCGAGAAGTTGATTTGCGCGAAACTCATTTAGCTGGTGCTAAGCTTGGAGGTGCAAATCTGCTTGGAGCTATCAGGTAATACCA AGGGAAGAAGCTTATATCTTCTACATTTACAATTAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTTGTTCATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGGCGGTTGTACATATACCCTT G TCACATTCCTCTGATTCGAAAATTCGGTGATGAACTGTTGGATACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTCTAGTAGGAAAATTTCCTGCATACTTTGGGATATTGTTGTGAACAATGACTGAAAATTTTAGTGGGA AATATATCTTC                            ]
[+] EMBL CF280192             [  GGGAGGGGGGCGTGGTGGAGGACGAAGGCGACGGTGGCAAAATCGG NACGGC ACGGCGGCGGCGGCGGCGATGGCGAAGGGGAGGGACGCGCGGTGGGAGTAGATACTGTAGTCGTGCGTGCTCCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAACCCAGATCCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCGCCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGGCAAGAGGTACTCGACCACCGTCGATACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCAGGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF326024             [                                                             GGCGGCGGCGGCGATGGCGAAGGGGAGGGACGCGCGGTGGGAGTAGATACTGTAGTCGTGCGTGCTCCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAACCCAGATCCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCGCCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCGCCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACCAGTTGCTCGGCTTGGCTGATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB679126             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATT GAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGCCA ATCTCAAGGGAGCTAAGTTGGCCGGTACA AACTTGGAATGTGCAAATCTTCAGCGAGCCTACTTGCGAGAAGTTGATTTGCGCGAAACTCATTTAACTGGTGCTAAGCTTGGAGGTGCAAATCTGCTTGGAGCTATCAGATAATACCA AGGGAAGAAGCTTATATCTTCTACATTTACAATTAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTTGTTCATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGGTGGTTGTACATATACCCTT G TCACATTCCTCTGATTCGAAAATTCGGTGATGAACTGTTGGATACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTCTAGTAGGAAAATTTCCTGCATACTTTGGGATATTGTTGTGAACAATGACTGAAAGTTTTAGTGGGA AATATATCTTCGTTAATGTGCA                 ]
[+] EMBL BM419314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cAACCTACA GAT CATGCTTAAACCAATGTTGCTTCATTGGAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGCCACATCTCAAGGGAGCTAAGTTGGCCGGTACACAACTTGGAATGTGCAAATCTTCAGCGAGCCTACTTGCGAGAAGTTGATTTGCGCGAAACTCATTTAACTGGTGCTAAGCTTGGAGGTGCAAATCTGGTTGGAGCTATCAGATAATACCACAGGGAAGAAGCTTATATCTTCTACATTTACAATTAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTTGTTCATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGGCGGTTGTACATATACCCTTCG TCACATTCCTCTGATTCGAAAATTCGGTGATGAACTGTTGGATACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTCTAGTAGGAAAATTTCCTGCATACTTTGGGATATTGTTGTGAACCATGACTGAAAATTTTAGTGGGANNCTATATCTTCGTTAATGTGCAAAAAAAAAA        ]
[-] EMBL CB636752             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGCCA ATCTCAAGGGAGTTAAGTTGGCCGGTACA AACTTGGAATGTGCAAATCTTCAGCGAGCCTACTTGCGAGAAGTTGATTTGCGCGAAACTCATTTAACTGGTGCTAAGCTTGGAGGTGCAAATCTGCTTGGAGCTATCAGATAATACCA AGGGAAGAAGCTTATATCTTCTACATTTACAATTAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTTGTTCATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGGCGGTTGTACATATACCCTT GATCACATTCCTCTGATTCGAAAATTCGGTGATGAACTGTTGGATACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTCTAGTAGGAAAATTTCCTGCA ACTTTGGGATATTGTTGTGAACAATGACTGAAAATTTTAGTGGGA AATA ATCTTC                            ]
[+] EMBL AU172700             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCTACTTGCGAGAAGTTGATTTGCGCGAAACTCATTTAACTGGTGCTAAGCTTGGAGGTGCAAATCTGCTTGGAGCTATCAGATAATACCA AGGGAAGAAGCTTATATCTTCTACATTTACAATTAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTTGTTCATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGGCGGTTGTACATATACCCTT G TCACATTCCTCTGATTCGAAAATTCGGTGATGAACTGTTGGATACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTCTAGTAGGAAAATTTCCTGCATACTTTGGGATATTGTTGTGAACAATGACTGAAAATTTTAGTGGGA AATATATCTTCGTTAATGTGCAAAAAAA           ]
[-] EMBL CF280193             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATACCA AGGGAAGAAGCTTATATCTTCTACATTTACAATTAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTTGTTCATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGGCGGTTGTACATATACCCTT G TCACATTCCTTTGATTCGAAAATTCGGTGATGAACTGTTGGATACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTTTAGTAGGAAAATTTCCTGCATACTTTGGGATATTGTTGTGAACAATGACTGAAAATTTTAGTGGGA AATATATCTTCGTTAATGTGCATAAAAAAAAAAAAAAAA]


>consensus_13195#0 CCGGGAGGGGGGCGTGGTGGAGGACGAAGGCGACGGTGGCAAAATCGGCGACGGCGACGG CGGCGGCGGCGGCGATGGCGAAGGGGAGGGACGCGCGGTGGGAGTAGATACTGTAGTCGT GCGTGCTCCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAA CCCAGATCCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCG CCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACA TCGGGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCA TGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGG TGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCG CCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACC AGTTGCTCGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATT TCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCA GATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGTGG ACTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAA GTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGA GCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGCAAA CCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGATCTTCGTTCTGCTCA TCTACAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGCCAA TCTCAAGGGAGCTAAGTTGGCCGGTACAAACTTGGAATGTGCAAATCTTCAGCGAGCCTA CTTGCGAGAAGTTGATTTGCGCGAAACTCATTTAACTGGTGCTAAGCTTGGAGGTGCAAA TCTGCTTGGAGCTATCAGATAATACCAAGGGAAGAAGCTTATATCTTCTACATTTACAAT TAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTTGTT CATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGGCGG TTGTACATATACCCTTGTCACATTCCTCTGATTCGAAAATTCGGTGATGAACTGTTGGAT ACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTCTAGTAGGAAAATTTCCTGCA TACTTTGGGATATTGTTGTGAACAATGACTGAAAATTTTAGTGGGAAATATATCTTCGTT AATGTGCAAAAAAAAAAAAAAAAAA



consensusID : consensus_13195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 941
fasta sequence
                              [CCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAACCCAGATCCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCGCCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCGCCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACCAGTTGCTCGTAATTGGAATTCTCGATCGTTTCTTCGATTCATCAGGTTGCAGCTTCCCAATTAACCAGCCGTTGTGAAAACATGATGGTTTGTTTTCCAGGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTAAAAGCAATGTTGCTTCATTGAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAA]

[+] EMBL CB636751             [CCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAACCCAGATCCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCGCCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCGCCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACCAGTTGCTCGTAATTGGAATTCTCGATCGTTTCTTCGATTCATCAGGTTGCAGCTTCCCAATTAACCAGCCGTTGTGAAAACATGATGGTTTGTTTTCCAGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB679125             [                                                                                          caacatcggCGACGGCCGCGCCGCCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCGCCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACCAGTTGCTCGTAATTGGAATTCTCGATCGTTTCTTCGATTCATCAGGTTGCAGCTTCCCAATTAACCAGCCGTTGTGAAAACATGATGGTTTGTTTTCCAGGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTAAAAGCAATGTTGCTTCATTGAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAA]


>consensus_13195#1 CCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAACCCAGAT CCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCGCCGCCGC GGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGG CAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGC CGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGT GGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCGCCGTCCC AGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACCAGTTGCT CGTAATTGGAATTCTCGATCGTTTCTTCGATTCATCAGGTTGCAGCTTCCCAATTAACCA GCCGTTGTGAAAACATGATGGTTTGTTTTCCAGGGCTTGGCTGATTGCATAAATGATAGA TTGGGTTGGAAAAATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATC AAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTA TCCAAACTTGATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTT TCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTC CAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTA GATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTAAAAGCAATGTTGCTTC ATTGAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAA



consensusID : consensus_13195#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 530
fasta sequence
                              [GGCAGGTCTACCAGTTGCTCGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGATAAATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTA-GATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAATCTTATGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGCCAATCTCAACGGAGCTAACTTGGCCGGTCCTCGGCCGCGAC]

[+] EMBL BU572360             [GGCAGGTCTACCAGTTGCTCGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGATAAATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTA GATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGATCTTCGTTCTGCTCATCTACAGGGTGCTAATCTTATGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGCCAATCTCAACGGAGCTAACTTGGCCGGTCCTCGGCCGCGAC]
[+] EMBL OSC363               [                    GGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGGATAAAGCAAACCTTCAAAGTGCAAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGNTCTTCG TCTGCTCATCTACAGGGNGCTAATCTTATtgg                                                                         ]


>consensus_13195#2 GGCAGGTCTACCAGTTGCTCGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGATAA ATGATGAGAATTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAG CTCCGAGAGTCAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATT TATCAGAGGTGGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATC TTCGTAAAGCAAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATT TACATGAGTGTGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACC TTCAAAGTGCAAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGATC TTCGTTCTGCTCATCTACAGGGTGCTAATCTTATGGCGCCAACTTGAGTGGAGCTAATCT TGAAGGGGCCAATCTCAACGGAGCTAACTTGGCCGGTCCTCGGCCGCGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13195#0      CCGGGAGGGGGGCGTGGTGGAGGACGAAGGCGACGGTGGCAAAATCGGCGACGGCGACGG 60
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      -------------------------------------CCGGACCAGCAGCAGGTAGCGGC 23
                                                                                   

consensus_13195#0      CGGCGGCGGCGGCGATGGCGAAGGGGAGGGACGCGCGGTGGGAGTAGATACTGTAGTCGT 120
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      GCGGGGAAGGAAGCTACTGGTGGGGGACAACCCAGATCCCTCGCCCGCGACTCTTCTACT 83
                                                                                   

consensus_13195#0      GCGTGCTCCGGACCAGCAGCAGGTAGCGGCGCGGGGAAGGAAGCTACTGGTGGGGGACAA 180
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      CGCGCTCGCACGCCCTCGTCGGCCGCGCCGCCGCCGCGGTGATGGAGTCGCCGCCGGAGT 143
                                                                                   

consensus_13195#0      CCCAGATCCCTCGCCCGCGACTCTTCTACTCGCGCTCGCACGCCCTCGTCGGCCGCGCCG 240
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      CCTCCTCCTCCTCCCCGGTCCTCCTCAACATCGGGGGCAAGAGGTACGCGACCACCGTCG 203
                                                                                   

consensus_13195#0      CCGCCGCGGTGATGGAGTCGCCGCCGGAGTCCTCCTCCTCCTCCCCGGTCCTCCTCAACA 300
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      AGACGCTCACGCAGCGGGAGCCCAGCTCCATGCTCGCCGCCATGTTCAGCGGGAGGCACA 263
                                                                                   

consensus_13195#0      TCGGGGGCAAGAGGTACGCGACCACCGTCGAGACGCTCACGCAGCGGGAGCCCAGCTCCA 360
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      CGCTCCCCCGGCACCCGGACACGGGCATGGTGTTCGTGGACAGGGACGGGAAGCACTTCA 323
                                                                                   

consensus_13195#0      TGCTCGCCGCCATGTTCAGCGGGAGGCACACGCTCCCCCGGCACCCGGACACGGGCATGG 420
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      GGCATGTCCTCAACTGGCTCAGGGACGGCGCCGTCCCAGACATGTCGGAGTCTGAGTACC 383
                                                                                   

consensus_13195#0      TGTTCGTGGACAGGGACGGGAAGCACTTCAGGCATGTCCTCAACTGGCTCAGGGACGGCG 480
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      AGCAGCTCCTGCGAGAAGCGGAGTACTACCAGTTGCTCGTAATTGGAATTCTCGATCGTT 443
                                                                                   

consensus_13195#0      CCGTCCCAGACATGTCGGAGTCTGAGTACCAGCAGCTCCTGCGAGAAGCGGAGTACTACC 540
consensus_13195#2      ------------------------------------------------GGCAGGTCTACC 12
consensus_13195#1      TCTTCGATTCATCAGGTTGCAGCTTCCCAATTAACCAGCCGTTGTGAAAACATGATGGTT 503
                                                                          *        

consensus_13195#0      AGTTGCTC--GGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAA 598
consensus_13195#2      AGTTGCTC--GGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGATAAATGATGAGAA 70
consensus_13195#1      TGTTTTCCAGGGCTTGGCTGATTGCATAAATGATAGATTGGGTTGGAAAAATGATGAGAA 563
                        ***   *  ************************************* ************

consensus_13195#0      TTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGT 658
consensus_13195#2      TTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGT 130
consensus_13195#1      TTTCTCGGAGGCCGAATTGACACGCAAAGATGTGATCAAGTGCATCCAAGCTCCGAGAGT 623
                       ************************************************************

consensus_13195#0      CAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGT 718
consensus_13195#2      CAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGT 190
consensus_13195#1      CAGATTTCGTGGTGTAAATCTATCTGGCCTTGATCTATCCAAACTTGATTTATCAGAGGT 683
                       ************************************************************

consensus_13195#0      GGACT-CAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGC 777
consensus_13195#2      GGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGC 250
consensus_13195#1      GGACTTCAGCTATGCATGCATAAAGAATGCCAATTTTTCCTCTGCTTATCTTCGTAAAGC 743
                       ***** ******************************************************

consensus_13195#0      AAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTG 837
consensus_13195#2      AAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTG 310
consensus_13195#1      AAAGTTCAGGCTGACAGAAGCTACTTGTTCTTCATTCCAAAGTGCAAATTTACATGAGTG 803
                       ************************************************************

consensus_13195#0      TGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGC 897
consensus_13195#2      TGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGC 370
consensus_13195#1      TGAGCTTATTGGAGCAAATCTTGAAGGATCTGTTCTAGATAAAGCAAACCTTCAAAGTGC 863
                       ************************************************************

consensus_13195#0      AAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGATCTTCGTTCTGC 957
consensus_13195#2      AAACCTACAGGATGCATGCTTAAAGCAATGTTGCTTCATTGAAACGGATCTTCGTTCTGC 430
consensus_13195#1      AAACCTACAGGATGCATGCTAAAAGCAATGTTGCTTCATTGAAACGGATCTTCGTTCTGC 923
                       ******************** ***************************************

consensus_13195#0      TCATCTACAGGGTGCTAATCTTATGGGCGCCAACTTGAGTGGAGCTAATCTTGAAGGGGC 1017
consensus_13195#2      TCATCTACAGGGTGCTAATCTTATGG-CGCCAACTTGAGTGGAGCTAATCTTGAAGGGGC 489
consensus_13195#1      TCATCTACAGGGTGCTAA------------------------------------------ 941
                       ******************                                          

consensus_13195#0      CAATCTCAAGGGAGCTAAGTTGGCCGGTACAAACTTGGAATGTGCAAATCTTCAGCGAGC 1077
consensus_13195#2      CAATCTCAACGGAGCTAACTTGGCCGGTCCTCGGCCGCGAC------------------- 530
consensus_13195#1      ------------------------------------------------------------
                                                                                   

consensus_13195#0      CTACTTGCGAGAAGTTGATTTGCGCGAAACTCATTTAACTGGTGCTAAGCTTGGAGGTGC 1137
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      ------------------------------------------------------------
                                                                                   

consensus_13195#0      AAATCTGCTTGGAGCTATCAGATAATACCAAGGGAAGAAGCTTATATCTTCTACATTTAC 1197
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      ------------------------------------------------------------
                                                                                   

consensus_13195#0      AATTAAACTGAAACTGGTGCTTTGGTACCTCGAACATTATCTTGCCTGCACCAACGGTTT 1257
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      ------------------------------------------------------------
                                                                                   

consensus_13195#0      GTTCATGAGTAAATAGTTTCTTGCTACCGATTCTGCAGATAGTCATACAGCTTTAGTCGG 1317
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      ------------------------------------------------------------
                                                                                   

consensus_13195#0      CGGTTGTACATATACCCTTGTCACATTCCTCTGATTCGAAAATTCGGTGATGAACTGTTG 1377
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      ------------------------------------------------------------
                                                                                   

consensus_13195#0      GATACAGCTAGTTGCTTAGTATCATCATGGATAGAAGCTGTTCTAGTAGGAAAATTTCCT 1437
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      ------------------------------------------------------------
                                                                                   

consensus_13195#0      GCATACTTTGGGATATTGTTGTGAACAATGACTGAAAATTTTAGTGGGAAATATATCTTC 1497
consensus_13195#2      ------------------------------------------------------------
consensus_13195#1      ------------------------------------------------------------
                                                                                   

consensus_13195#0      GTTAATGTGCAAAAAAAAAAAAAAAAAA 1525
consensus_13195#2      ----------------------------
consensus_13195#1      ----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)