cluster # 13196

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Oryza sativa
cluster # 13196 cluster # 13196 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13196#0 length = 696 sequences # 11

consensus_13196#1 length = 624 sequences # 1

consensusID : consensus_13196#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 696
fasta sequence

                              [AAGTCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGT--AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT-GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT-CCTCGTCCAC-TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT-AGC-TAGCTAGCTAGCTA-GGAGGTACCAT-GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGATG-GTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA998800             [AAGTCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTAGAGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATA                                                                                                                                                                                            ]
[+] EMBL OSC9311              [   TCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGT  AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTNGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGNGAGGATCGTGGAGTTCGGCAACTTCCAGANCAGCGGCCTCTCCAT NCTCGTCCAC TNCATCATCTACTTCGCGCTCATCG                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA999744             [       CCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTAGAGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTT                                                                                              ]
[+] EMBL C73696               [        CAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGT  AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCTGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCNGCCTCTCCAT CCTCGTCCACTTCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAAGCTTAGCTAGCTAGTTAGGGAGGTACCAT GCTNGCT                                                                                                                                                                                                                                                               ]
[+] EMBL OS1321859            [                                                ACAAGAATCACATCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGT  AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGNCCNGTGTTCATAGGGCTGGTGCTGTTCATCCTNCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT NCTCGTCCAC TNCATCAT                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU174396             [                                                                                                     CTCATTCTTCTCTTCTGTCAGT  AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAAaaa                                                                                                                                                                     ]
[+] EMBL OSC9761              [                                                                                                      TCATTCTTCTCTTCTGTCAGT  AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGACTTCG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK062973             [                                                                                                          TCTTCTCTTCTGTCAGT  AGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGATG GTTAATTACTCATGATAAGTTCATATGAAAAAT                                               ]
[+] EMBL AU174115             [                                                                                                                                                                             AGGTAGCTAGAGANAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCANCGGCCTCTCCAT CCTCGTCCAC TCCATCATNTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGATG GTTAATTACTCATGATAAGTTCATATGAAAAAaaa                                             ]
[+] EMBL BE229397             [                                                                                                                                                                                                                  cgaGGGCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCT GCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCAT CCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTAT  TATATATATATGATTTTCYYAATTYCGGCTAGCTAGCAATTTGANTACTACTGTTCYGTGAGTTTTAGTTTATATAATGTAAACTYACTTGAGCTTGTAGCTTAAGATGTGTTAATTACTCATGWTATGYTCATATGAAAAWTGTGGTTAATTAAAAA                                ]
[+] EMBL AU091312             [                                                                                                                                                                                                                                                           GTCGCCGGGGCTGGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCATCCCTCGTCCAC TCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCT AGC TAGCTAGCTAGCTA GGAGGTNCCAT GCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGATG GTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13196#0
AAGTCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACA
TCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTC
AGTAGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTA
GAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCCGGTGTTCATAGGGCTGGTGCTGTT
CATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTT
CGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGCT
CATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCTA
GCTAGGAGGTACCATGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATT
ACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTAGC
TAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAG
CTTGTAGCTTAAGATGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13196#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [TGAAGGAGTAGAAAAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTATAGAGAGAGAGAGAGTGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGNCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCTAGCTAGGAGGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATNTATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGACGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTATTCTGATTTGTTTTTTTTTGTTTTCTCTTTT]

[+] EMBL CF308755             [TGAAGGAGTAGAAAAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTATAGAGAGAGAGAGAGTGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGNCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCTAGCTAGGAGGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATNTATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAGCTTAAGACGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTATTCTGATTTGTTTTTTTTTGTTTTCTCTTTT]




>consensus_13196#1
TGAAGGAGTAGAAAAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTCAGTA
TAGAGAGAGAGAGAGTGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTAGAGAGAGA
GTAGGCGATCGATGGCGGATTGGGGGNCCGGTGTTCATAGGGCTGGTGCTGTTCATCCTG
CTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGTTCGGCAAC
TTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGCTCATCGCC
ATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCTAGCTAGGA
GGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAATTACTAGC
ATTTATGCAAGAATGGTATNTATATATATATGATTTTCTTAATTTGGGCTAGCTAGCAAT
TTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTGAGCTTGTAG
CTTAAGACGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAATTATTCTGAT
TTGTTTTTTTTTGTTTTCTCTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13196#0      AAGTCTTCCAAGCTGAGTGTGTGTGTGAAAGAGAGAGACCTACTTAGTACAAGAATCACA 60
consensus_13196#1      ------------------------------------------------------------
                                                                                   

consensus_13196#0      TCTGCATATCTTCCCTGCAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTC 120
consensus_13196#1      ----TGAAGGAGTAGAAAAACCGTGTGAAGAAGGATCACAACTCATTCTTCTCTTCTGTC 56
                              *          ******************************************

consensus_13196#0      AGTAGAGAGAGAGAGAGAGAGAGAGAGATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTA 180
consensus_13196#1      AGTATAGAGAGAGAGAGAGTGA----GATCAAGAACTAGAGAGAGAAAGGTAGGTAGCTA 112
                       **** ************** **    **********************************

consensus_13196#0      GAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGCC-GGTGTTCATAGGGCTGGTGCTGT 239
consensus_13196#1      GAGAGAGAGTAGGCGATCGATGGCGGATTGGGGGNCCGGTGTTCATAGGGCTGGTGCTGT 172
                       ********************************** * ***********************

consensus_13196#0      TCATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGT 299
consensus_13196#1      TCATCCTGCTGTCGCCGGGGCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAGT 232
                       ************************************************************

consensus_13196#0      TCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGC 359
consensus_13196#1      TCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGC 292
                       ************************************************************

consensus_13196#0      TCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCT 419
consensus_13196#1      TCATCGCCATCTTCCTCCTCGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCT 352
                       ************************************************************

consensus_13196#0      AGCTAGGAGGTACCATG-CTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAA 478
consensus_13196#1      AGCTAGGAGGTACCATGGCTGGCTCTGGCATGTGAAATGTTCATCGATCAGCTAAATTAA 412
                       ***************** ******************************************

consensus_13196#0      TTACTAGCATTTATGCAAGAATGGTATTATATATATATATGATTTTCTTAATTTGGGCTA 538
consensus_13196#1      TTACTAGCATTTATGCAAGAATGGTATN-TATATATATATGATTTTCTTAATTTGGGCTA 471
                       ***************************  *******************************

consensus_13196#0      GCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTG 598
consensus_13196#1      GCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTAGTTTATATAATGTAAACTTACTTG 531
                       ************************************************************

consensus_13196#0      AGCTTGTAGCTTAAGATGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAAT 658
consensus_13196#1      AGCTTGTAGCTTAAGACGGTTAATTACTCATGATAAGTTCATATGAAAAATGTGGTTAAT 591
                       **************** *******************************************

consensus_13196#0      TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 696
consensus_13196#1      TATTCTGATTTGTTTTTTTTTGTTTTCTCTTTT----- 624
                       **     *