Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13197 cluster # 13197       Sequences # 12       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13197#0 length = 2029 sequences # 10  
 consensus_13197#1 length = 509 sequences # 1  
consensus_13197#2 length = 392 sequences # 1  
consensusID : consensus_13197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2029
fasta sequence 
                              [CACACTCTCTCTCCTCTCTTTCTCGCCCGTTTCCCCACCACCACCACCACCACCACCTCCCCTCTCCCATTCGACCAAATCGGCGAGGGGAATAGCCCCCCCGCGCGCCGCGCCTCCTCTCGTCGCCGGCGATGGCCGACGGCGAGGCCTCCTCCGGCGCGTACAGGGAGTTCAAGGCGCTGACGGAGGCGGCGGACCGCAAGTTCGCGCGCGCGCGCGACGTGCCGCTCTACGGCGGCGGGGTGGACCACCACAGCCGGAAGGCGTTCAAGGCGTACACGCGGCTGTGGCGCCTGCAGCAGGAGCGGCGGCGGGAGCTCGTCGCGGGCGGGCTGCGGCGGTGGGAGATCGGGGAGGTGGCCTCCCGGATCGGGCAGCTCTACTACGCGCGCTACCTCCGCACCGCCGAGCCGCGCTCGCTCGTCGGCGCCTACGTGTTCTACGAGGCCATCTACAGCCGCGGGTACTTCGCCGCCGCGGCGCAGGTGGTGGTGGGCGGCGGCTACAGGCACCAGGGCCTCCTGATCCGGTACAAGGAGCTGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGAACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTCTATCTATCAGCATCAGGTTTTTCCGAGCAGAACATTACTTCTCAAAAGTATGCCTCAAGCTCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAAATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGGTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCA----AGGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATGGAAGCCAATTTACGTACTTCCTCACAGCTCCAATGCAAGCCTTCTGCCAATTAGCTGGGATAACTTCTGACATAGACAGCGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCAAATGCTGAAGCCATCATGGCCCCCATCCTTGAGTTTGCAGAAAACCTTGTTGTGAGCGACCGGTTTCATTTCCGACATTCTGTCCACAACAATAAGAAATGATGATCAGGAGCAACAACTCAATCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATTTGTTGATTTGTTCGTATTTATACAGCAAACGGAGCATGATTCAGTATGA]

[+] EMBL AK065853             [CACACTCTCTCTCCTCTCTTTCTCGCCCGTTTCCCCACCACCACCACCACCACCACCTCCCCTCTCCCATTCGACCAAATCGGCGAGGGGAATAGCCCCCCCGCGCGCCGCGCCTCCTCTCGTCGCCGGCGATGGCCGACGGCGAGGCCTCCTCCGGCGCGTACAGGGAGTTCAAGGCGCTGACGGAGGCGGCGGACCGCAAGTTCGCGCGCGCGCGCGACGTGCCGCTCTACGGCGGCGGGGTGGACCACCACAGCCGGAAGGCGTTCAAGGCGTACACGCGGCTGTGGCGCCTGCAGCAGGAGCGGCGGCGGGAGCTCGTCGCGGGCGGGCTGCGGCGGTGGGAGATCGGGGAGGTGGCCTCCCGGATCGGGCAGCTCTACTACGCGCGCTACCTCCGCACCGCCGAGCCGCGCTCGCTCGTCGGCGCCTACGTGTTCTACGAGGCCATCTACAGCCGCGGGTACTTCGCCGCCGCGGCGCAGGTGGTGGTGGGCGGCGGCTACAGGCACCAGGGCCTCCTGATCCGGTACAAGGAGCTGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGAACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTCTATCTATCAGCATCAGGTTTTTCCGAGCAGAACATTACTTCTCAAAAGTATGCCTCAAGCTCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAAATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGGTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCA    AGGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATGGAAGCCAATTTACGTACTTCCTCACAGCTCCAATGCAAGCCTTCTGCCAATTAGCTGGGATAACTTCTGACATAGACAGCGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCAAATGCTGAAGCCATCATGGCCCCCATCCTTGAGTTTGCAGAAAACCTTGTTGTGAGCGACCGGTTTCATTTCCGACATTCTGTCCACAACAATAAGAAATGATGATCAGGAGCAACAACTCAATCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATTTGTTGATTTGTTCGTATTTATACAGCAAACGGAGCATGATTCAGTATG ]
[+] EMBL AK072191             [                                CCCCACCACCACCACCACCACCACCTCCCCTCTCCCATTCGACCAAATCGGCGAGGGGAATAGCCCCCCCGCGCGCCGCGCCTCCTCTCGTCGCCGGCGATGGCCGACGGCGAGGCCTCCTCCGGCGCGTACAGGGAGTTCAAGGCGCTGACGGAGGCGGCGGACCGCAAGTTCGCGCGCGCGCGCGACGTGCCGCTCTACGGCGGCGGGGTGGACCACCACAGCCGGAAGGCGTTCAAGGCGTACACGCGGCTGTGGCGCCTGCAGCAGGAGCGGCGGCGGGAGCTCGTCGCGGGCGGGCTGCGGCGGTGGGAGATCGGGGAGGTGGCCTCCCGGATCGGGCAGCTCTACTACGCGCGCTACCTCCGCACCGCCGAGCCGCGCTCGCTCGTCGGCGCCTACGTGTTCTACGAGGCCATCTACAGCCGCGGGTACTTCGCCGCCGCGGCGCAGGTGGTGGTGGGCGGCGGCTACAGGCACCAGGGCCTCCTGATCCGGTACAAGGAGCTGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGAACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTCTATCTATCAGCATCAGGTTTTTCCGAGCAGAACATTACTTCTCAAAAGTATGCCTCAAGCTCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAAATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGGTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCAAGGCAGGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATGGAAGCCAATTTACGTACTTCCTCACAGCTCCAATGCAAGCCTTCTGCCAATTAGCTGGGATAACTTCTGACATAGACAGCGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCAAATGCTGAAGCCATCATGGCCCCCATCCTTGAGTTTGCAGAAAACCTTGTTGTGAGCGACCGGTTTCATTTCCGACATTCTGTCCACAACAATAAGAAATGATGATCAGGAGCAACAACTCAATCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATTTGTTGATTTGTTCGTA                                 ]
[+] EMBL CB673702             [                                          ACCACCACCACCACCTCCCCTCTCCCATTCGACCAAATCGGCGAGGGGAATAGCCCCCCCGCGCGCCGCGCCTCCTCTCGTCGCCGGCGATGGCCGACGGCGAGGCCTCCTCCGGCGCGTACAGGGAGTTCAAGGCGCTGACGGAGGCGGCGGACCGCAAGTTCGCGCGCGCGCGCGACGTGCCGCTCTACGGCGGCGGGGTGGACCACCACAGCCGGAAGGCGTTCAAGGCGTACACGCGGCTGTGGCGCCTGCAGCAGGAGCGGCGGCGGGAGCTCGTCGCGGGCGGGCTGCGGCGGTGGGAGATCGGGGAGGTGGCCTCCCGGATCGGGCAGCTCTACTACGCGCGCTACCTCCGCACCGCCGAGCCGCGCTCGCTCGTCGGCGCCTACGTGTTCTACGAGGCCATCTACAGCCGCGGGTACTTCGCCGCCGCGGCGCAGGTGGTGGTGGGCGGCGGCTACAGGCACCAGGGCCTCCTGATCCGGTACAAGGAGCTGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGAACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB637186             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCCTGATCCGGTACAAGGAGCTGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCGTACCCCAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGAACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTATTGACAACCTATCACAGAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCATAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTC AAAGGCAATCATATATCATCCTACAGTATCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB628694             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCTGATCCGGTACAAGGAGCTGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGAACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTCTATCTATCAGCATCAGGTTTTTCCGAGCAGAACATTACTTCTCAAAAGTATGCCTCAAGCTCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAAATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGGTCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB637066             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCTGATCCGGTACAAGGAGCTGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGGACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCAAAACCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATGGAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGAACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATCCTACAGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB642848             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGAACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACACAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTCTATCTATCAGCATCAGGTTTTTCCGAGCAGAACATTACTTCTCAAAAGTATGCCTCAAGCTCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAAATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGGTCCAAACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCGATAGTGAAAATAGTCATGCATTCA    AGGCTATACATAATGCAGAGAAGGGAGAGCCAGCTGCCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATGGAAGCCAATTTACGTACTTCCTCACAGCTCCAATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB642849             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCAAATGCTGAAGCCATCATGGCCCCCATCCTTGAGTTTGCAGAAAACCTTGTTGTGAGCGACCGGTTTCATTTCCGACATTCTGTCCACAACAATAAGAAATGATGATCAGGAGCAACAACTCAATCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATTTGTTGATTTGTTCGTATTTATACAGCAAACGGAGCATGATTCAGTATGA]
[-] EMBL CB673703             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCAAATGCTGAAGCCATCATGGCCCCCATCCTTGAGTTTGCAGAAAACCTTGTTGTGAGCGACCGGTTTCATTTCCGACATTCTGTCCACAACAATAAGAAATGATGATCAGGAGCAACAACTCAATCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATTTGTTGATTTGTTCGTATTTATACAGCAAACGGAGCATGATTCAGTATGA]
[-] EMBL CB628695             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TACATATGCTAACGCGGAAATCATACTTTTCTCCGCTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGGTTTATTTTCTGCCGAGCAGTTATCTTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTCCAGAATCAGTCGCGCCAAATGCTGAAGCCATCATGGCCCCCATCCTTGAGTTTGCAGAAAACCTTGTTGTGAGCGACCGGTTTCATTTCCGACATTCTGTCCGCAACAATAAGAAATGATGATCAGGAGCAACAACTCAATCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATTTGTTGATTTGTTCGTATTTATACAGCAAACGGAGCATGATTCAGTATGA]




>consensus_13197#0
CACACTCTCTCTCCTCTCTTTCTCGCCCGTTTCCCCACCACCACCACCACCACCACCTCC
CCTCTCCCATTCGACCAAATCGGCGAGGGGAATAGCCCCCCCGCGCGCCGCGCCTCCTCT
CGTCGCCGGCGATGGCCGACGGCGAGGCCTCCTCCGGCGCGTACAGGGAGTTCAAGGCGC
TGACGGAGGCGGCGGACCGCAAGTTCGCGCGCGCGCGCGACGTGCCGCTCTACGGCGGCG
GGGTGGACCACCACAGCCGGAAGGCGTTCAAGGCGTACACGCGGCTGTGGCGCCTGCAGC
AGGAGCGGCGGCGGGAGCTCGTCGCGGGCGGGCTGCGGCGGTGGGAGATCGGGGAGGTGG
CCTCCCGGATCGGGCAGCTCTACTACGCGCGCTACCTCCGCACCGCCGAGCCGCGCTCGC
TCGTCGGCGCCTACGTGTTCTACGAGGCCATCTACAGCCGCGGGTACTTCGCCGCCGCGG
CGCAGGTGGTGGTGGGCGGCGGCTACAGGCACCAGGGCCTCCTGATCCGGTACAAGGAGC
TGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGG
ACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCAAAA
CCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATG
GAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGA
ACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTAT
TGACAAGCTATCACAGAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAA
TGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTA
CAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTAT
CATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATC
CTACAGTATCTCATCTTCTAGCGGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATA
GCATCTTACTTGTCTATCTATCAGCATCAGGTTTTTCCGAGCAGAACATTACTTCTCAAA
AGTATGCCTCAAGCTCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAA
ATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGGTCCAA
ACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCG
ATAGTGAAAATAGTCATGCATTCAAGGCTATACATAATGCAGAGAAGGGAGAGCCAGCTG
CCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATG
GAAGCCAATTTACGTACTTCCTCACAGCTCCAATGCAAGCCTTCTGCCAATTAGCTGGGA
TAACTTCTGACATAGACAGCGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTT
TGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAA
TTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGGTTTATTTTCTGCCGAGCAGTTA
TATTCTATTTTCACCCTGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAGTCTTC
CAGAATCAGTCGCGCCAAATGCTGAAGCCATCATGGCCCCCATCCTTGAGTTTGCAGAAA
ACCTTGTTGTGAGCGACCGGTTTCATTTCCGACATTCTGTCCACAACAATAAGAAATGAT
GATCAGGAGCAACAACTCAATCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATT
TGTTGATTTGTTCGTATTTATACAGCAAACGGAGCATGATTCAGTATGA

consensusID : consensus_13197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence 
                              [TTTACCAATCCTTTTNTCAGGCGCCTGATCGTCAGGTTTATTTTCTCCCGACCAAGTGTATCTTCTATTTTCACCCCTGAGGAGAATGGTGAACATATACCCATCTGCCTACNCCNGTTCTTCCAGAATCAGTCGCNCCACAATGCTGATACCCCTCATGCGCCCCCATCCTTGAGTTTCNCAGAAANCCTTGGTTGTGTAGCGACCGGTTTCAGTTTCCGACATTCGTGTCCGCAACCATAAGAAATGTATGATCCAGGAGCAACAAACGTCAATCCGTTCTGTAGATACCTCCCCTGGTATATAATCACAGTTAGTTTGGTGAGTTTGTTCGTATTTATACNGCCCAACGGAGCCATGATTCAGTATGAACCACGGCGTGCTGCCAGCACCNCCACTTGGAAAGGGTGAATAATTTATCATTTTTCCCTNCTTCTATNTCCCAAAAAAAATAAAATAAAAATATAAAATAAAAAAAAAAAAAAAAAAANAACCCACCAAAAAAAAAA]

[+] EMBL BM421966             [TTTACCAATCCTTTTNTCAGGCGCCTGATCGTCAGGTTTATTTTCTCCCGACCAAGTGTATCTTCTATTTTCACCCCTGAGGAGAATGGTGAACATATACCCATCTGCCTACNCCNGTTCTTCCAGAATCAGTCGCNCCACAATGCTGATACCCCTCATGCGCCCCCATCCTTGAGTTTCNCAGAAANCCTTGGTTGTGTAGCGACCGGTTTCAGTTTCCGACATTCGTGTCCGCAACCATAAGAAATGTATGATCCAGGAGCAACAAACGTCAATCCGTTCTGTAGATACCTCCCCTGGTATATAATCACAGTTAGTTTGGTGAGTTTGTTCGTATTTATACNGCCCAACGGAGCCATGATTCAGTATGAACCACGGCGTGCTGCCAGCACCNCCACTTGGAAAGGGTGAATAATTTATCATTTTTCCCTNCTTCTATNTCCCAAAAAAAATAAAATAAAAATATAAAATAAAAAAAAAAAAAAAAAAANAACCCACCAAAAAAAAAA]




>consensus_13197#1
TTTACCAATCCTTTTNTCAGGCGCCTGATCGTCAGGTTTATTTTCTCCCGACCAAGTGTA
TCTTCTATTTTCACCCCTGAGGAGAATGGTGAACATATACCCATCTGCCTACNCCNGTTC
TTCCAGAATCAGTCGCNCCACAATGCTGATACCCCTCATGCGCCCCCATCCTTGAGTTTC
NCAGAAANCCTTGGTTGTGTAGCGACCGGTTTCAGTTTCCGACATTCGTGTCCGCAACCA
TAAGAAATGTATGATCCAGGAGCAACAAACGTCAATCCGTTCTGTAGATACCTCCCCTGG
TATATAATCACAGTTAGTTTGGTGAGTTTGTTCGTATTTATACNGCCCAACGGAGCCATG
ATTCAGTATGAACCACGGCGTGCTGCCAGCACCNCCACTTGGAAAGGGTGAATAATTTAT
CATTTTTCCCTNCTTCTATNTCCCAAAAAAAATAAAATAAAAATATAAAATAAAAAAAAA
AAAAAAAAAANAACCCACCAAAAAAAAAA

consensusID : consensus_13197#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence 
                              [NTGGCCCCCATCCTNGAGTANTGCNGAAAACTTGTTGTGAGCGACCGGTTNCATTTCCNACATTCTGTCCGCAANANTAAGAAATGATGATCNGGGAGCAACAACTCATTCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATNTGTNGATNTGTTCGTATTTATACAGCAAACGGGANCATGANNCGGTATGAAACAGGCTGCTGCANCAACTGCATCTTGGAAAAAGGTNAAATGATCTATCCATTTATCNCCTGCTTCATCTCCAANGAAACATCTGTACAANTTNGGTTAGGTGGTCCTTACCTTCTGATCTTTGCCTNTGTTNGGGGCTTCTCTTTCCTATGCCNNNCCGGTNTGTGGTGGANAAGGACAGTTTGTAACCTG]

[+] EMBL BE228733             [NTGGCCCCCATCCTNGAGTANTGCNGAAAACTTGTTGTGAGCGACCGGTTNCATTTCCNACATTCTGTCCGCAANANTAAGAAATGATGATCNGGGAGCAACAACTCATTCCTTCTGTAGATACCTCCATGGTATATAATCAAGTTATNTGTNGATNTGTTCGTATTTATACAGCAAACGGGANCATGANNCGGTATGAAACAGGCTGCTGCANCAACTGCATCTTGGAAAAAGGTNAAATGATCTATCCATTTATCNCCTGCTTCATCTCCAANGAAACATCTGTACAANTTNGGTTAGGTGGTCCTTACCTTCTGATCTTTGCCTNTGTTNGGGGCTTCTCTTTCCTATGCCNNNCCGGTNTGTGGTGGANAAGGACAGTTTGTAACCTG]




>consensus_13197#2
NTGGCCCCCATCCTNGAGTANTGCNGAAAACTTGTTGTGAGCGACCGGTTNCATTTCCNA
CATTCTGTCCGCAANANTAAGAAATGATGATCNGGGAGCAACAACTCATTCCTTCTGTAG
ATACCTCCATGGTATATAATCAAGTTATNTGTNGATNTGTTCGTATTTATACAGCAAACG
GGANCATGANNCGGTATGAAACAGGCTGCTGCANCAACTGCATCTTGGAAAAAGGTNAAA
TGATCTATCCATTTATCNCCTGCTTCATCTCCAANGAAACATCTGTACAANTTNGGTTAG
GTGGTCCTTACCTTCTGATCTTTGCCTNTGTTNGGGGCTTCTCTTTCCTATGCCNNNCCG
GTNTGTGGTGGANAAGGACAGTTTGTAACCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13197#0      CACACTCTCTCTCCTCTCTTTCTCGCCCGTTTCCCCACCACCACCACCACCACCACCTCC 60
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CCTCTCCCATTCGACCAAATCGGCGAGGGGAATAGCCCCCCCGCGCGCCGCGCCTCCTCT 120
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CGTCGCCGGCGATGGCCGACGGCGAGGCCTCCTCCGGCGCGTACAGGGAGTTCAAGGCGC 180
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TGACGGAGGCGGCGGACCGCAAGTTCGCGCGCGCGCGCGACGTGCCGCTCTACGGCGGCG 240
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      GGGTGGACCACCACAGCCGGAAGGCGTTCAAGGCGTACACGCGGCTGTGGCGCCTGCAGC 300
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      AGGAGCGGCGGCGGGAGCTCGTCGCGGGCGGGCTGCGGCGGTGGGAGATCGGGGAGGTGG 360
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CCTCCCGGATCGGGCAGCTCTACTACGCGCGCTACCTCCGCACCGCCGAGCCGCGCTCGC 420
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TCGTCGGCGCCTACGTGTTCTACGAGGCCATCTACAGCCGCGGGTACTTCGCCGCCGCGG 480
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CGCAGGTGGTGGTGGGCGGCGGCTACAGGCACCAGGGCCTCCTGATCCGGTACAAGGAGC 540
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TGCGGTTCATCGCGCGCTTCCTCGTCGTGGCCATGCTGATGCGGCGGGCCGAGGCGGTGG 600
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      ACCACCTCGCTTCCCGCCTCCGTTCGCTCGTCGAGGAGACCAAGTCGGCATACCCCAAAA 660
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CCAACTTCAAGGAATGGAAACAAGTGCTTCAAGAGCTTGGGAGATTCTTGAAAGCTGATG 720
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      GAGCATACAAGGGATCTAGATCACTGAGATATGACAACTTGTTTGACTCTTTTCCGTCGA 780
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      ACCTTGCACCTATTGCACGATTCCATTCAAAAAGAGTACTGAAACTGAAAGAAGCTGTAT 840
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TGACAAGCTATCACAGAAACGAGGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAA 900
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTA 960
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CAGAAAATGGCACTATAAGTGATCAGAGTGGACCCTCTGGCCTGATTGATATCCACCTAT 1020
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATC 1080
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CTACAGTATCTCATCTTCTAGCGGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATA 1140
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      GCATCTTACTTGTCTATCTATCAGCATCAGGTTTTTCCGAGCAGAACATTACTTCTCAAA 1200
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      AGTATGCCTCAAGCTCATCATATGCAAGGGCAACTTCCGTGTATCCCATCGATAAGCCAA 1260
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      ATTCCAATGGCAATTCAGATAATCATCTATGGCTTGGTCCCCGTGGAAGTGGAGGTCCAA 1320
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      ACAATCTTTATCCAGAAGATCTGATTCCCTTTACAAGATATCCACTATTCCTTGTTATCG 1380
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      ATAGTGAAAATAGTCATGCATTCAAGGCTATACATAATGCAGAGAAGGGAGAGCCAGCTG 1440
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      CCTTGCTACTTTCACCTAGGATAGCATCAGCAATGCCTGGTGTGGAATCCACGAGTAATG 1500
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      GAAGCCAATTTACGTACTTCCTCACAGCTCCAATGCAAGCCTTCTGCCAATTAGCTGGGA 1560
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TAACTTCTGACATAGACAGCGATACATATGCTAACGCGGAAATCATACTTTTCTCCGCTT 1620
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAA 1680
consensus_13197#1      ------------------------------------------------------------
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGGTTTATTTTCTGCCGAGCAGTTA 1740
consensus_13197#1      -TTTACCA-ATCCTTTTNTCAGGCGCCTGATCGTCAGGTTTATTTTCTCCCGACCAAGTG 58
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TAT--TCTATTTTCACCC-TGAGGAGAATGGTGAACATATACCAATCTGCCTACCCAG-- 1795
consensus_13197#1      TATCTTCTATTTTCACCCCTGAGGAGAATGGTGAACATATACCCATCTGCCTACNCCNGT 118
consensus_13197#2      ------------------------------------------------------------
                                                                                   

consensus_13197#0      TCTTCCAGAATCAGTCGCGCCA-AATGCTGA-AGCCATCATG-GCCCCCATCCTTGAGTT 1852
consensus_13197#1      TCTTCCAGAATCAGTCGCNCCACAATGCTGATACCCCTCATGCGCCCCCATCCTTGAGTT 178
consensus_13197#2      ---------------------------------------NTG-GCCCCCATCCTNGAGTA 20
                                                               ** *********** **** 

consensus_13197#0      T-GCAGAAAACCTTG-TTGTG-AGCGACCGGTTTCA-TTTCCGACATTC-TGTCCACAAC 1907
consensus_13197#1      TCNCAGAAANCCTTGGTTGTGTAGCGACCGGTTTCAGTTTCCGACATTCGTGTCCGCAAC 238
consensus_13197#2      NTGCNGAAAAC-TTG-TTGTG-AGCGACCGGTTNCA-TTTCCNACATTC-TGTCCGCAAN 75
                          * **** * *** ***** *********** ** ***** ****** ***** *** 

consensus_13197#0      AATAAGAAATG-ATGATC-AGGAGCAACAAC--TCAATCC-TTCTGTAGATACCTCCA-T 1961
consensus_13197#1      CATAAGAAATGTATGATCCAGGAGCAACAAACGTCAATCCGTTCTGTAGATACCTCCCCT 298
consensus_13197#2      ANTAAGAAATG-ATGATCNGGGAGCAACAAC--TCATTCC-TTCTGTAGATACCTCCA-T 130
                         ********* ******  **********   *** *** ****************  *

consensus_13197#0      GGTATATAATCA-AGTTA-TTTGTTGA-TTTGTTCGTATTTATACAGCA-AACGGAGC-A 2016
consensus_13197#1      GGTATATAATCACAGTTAGTTTGGTGAGTTTGTTCGTATTTATACNGCCCAACGGAGCCA 358
consensus_13197#2      GGTATATAATCA-AGTTA-TNTGTNGA-TNTGTTCGTATTTATACAGCA-AACGGGANCA 186
                       ************ ***** * **  ** * *************** **  *****    *

consensus_13197#0      TGATTCAGTATGA----------------------------------------------- 2029
consensus_13197#1      TGATTCAGTATGAACCACGGCGTGCTGCCAGCACCNCCACTTGGAAAGGGTGAATAATTT 418
consensus_13197#2      TGANNCGGTATGAAACAGGCTGCTGCANCAACTGCATCTTGGAAAAAGGTNAAATGATCT 246
                       ***  * ******                                               

consensus_13197#0      ------------------------------------------------------------
consensus_13197#1      ATCATTTTTCCCTNCTTCTATNTCCCAAAAAAAATAAAATAAAAATATAAAATAAAAAAA 478
consensus_13197#2      ATCCATTTATCNCCTGCTTCATCTCCAANGAAACATCTGTACAANTTNGGTTAGGTGGTC 306
                                                                                   

consensus_13197#0      ------------------------------------------------------------
consensus_13197#1      AAAAAAAAAAAANAACCCACCAAAAAAAAAA----------------------------- 509
consensus_13197#2      CTTACCTTCTGATCTTTGCCTNTGTTNGGGGCTTCTCTTTCCTATGCCNNNCCGGTNTGT 366
                                                                                   

consensus_13197#0      --------------------------
consensus_13197#1      --------------------------
consensus_13197#2      GGTGGANAAGGACAGTTTGTAACCTG 392


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)