These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2497 fasta sequence [AACCCCGCCGTCACTATCTTCATCCGCCGTCCCGACGCCGCGAGCCCAAACCCCTAACCCCGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACGACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGGCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTGCCCTCCGCGCCGCGCTCGGTACCGAGGCTTAAATCCTGTGCACTCTCTCCCAATCCTCGAGTTTTTCTAGGGTTATTATGTAGGATCGTTCGATTGGATTGGGGGTACGCATGTTGGGTAGGTTGGTGTTGGTCCTTACCTATGCAGCGCAATTCTAGATTTGCCCTTCCGTGTTTGTGGATCAGCTCCTGTAGTAGTTCAACCTGAACTGTGGTAGTCTGAAGTTTGTACTGGATGTTTCTGGCCTATGGGTTTGAGTCGTTTCTGCAGAGGCCCTATGTGATGCAAAAACAGTATCGGCTTGAAAAATTGATTGCCACTATTACATAGAAGCAGCTTGAATTTTAGTACAACTCTGTGTGCAGGCACTTGGTATTTTAATACGAGTCTGCATATGGACTAGACTAGATGGAGACATGCTTTTGAAATATAAAAAACAAGGCTAATTATATCTTTTTTTAGTTGAAATCTATAGTACCCCTTTGTTGGAAAACGTGGTAAACTGGTGATTGAATCTAAAAGTAGCACCTGACCATGCACTTTTTGTGATATTTGTAACTGTTGTGTGTCTAGTTATCTGCATTTGATGTAAAGTTAGCTTGGCGTGTTGTGCCGAGGAAGTGATGGGATAACGTTAGTCACATAAATCTTTTCTTATTATAGTAAAAAAACAGGTTTGAAAATAGCAGAACATAATCCCTTTTGAAAATCCACAACAATGCCAATTTCTTCTTTGCCCAACCCATGAAATTTTGTCCTGGGCAATTCATGTAATTTGAAGGGACAACACTAGTTTGTGAATCTGTTATCTTGTTCCTTTTTTACCTGCATGCTATGTTCCTATTAACCTTCATTGGATGGTTTTAAATCTTTGTTTCACTTTCAACACCAATTTGTGGTTACCTTGATTTTTTCTGATGATGTATTCTCTATTCTTCAGTTGTATATTCGGAACAGTGAACTTCCGTGCATACATAGGCTGTCCTGGTTGATTCATCTGTTTGTGTTTGAAACTTATCAAGTTGAAGAGTAGTAGTTTTCCCCCATTAATTTTCACAGAAGCTGCACTGAAACGAAGCACTTTGCTATTGATTGGGTAGAATTGAGTTCAAAAACTGTTGCCAATGCTTTGTATTTTCCATTCTTTTCTAGTGAGGGCTTTAATAAGTCATGTCCTTATGGCATTCTTAACACATTGCTGCAATCCTGTAATGATTACATATGTGTGATGCTTTCACCATGCTAACCATCTCAGTGTGTTGTGGCAAATCTATTTCGTTTTTCTAAATTTCATAGCAAAAATGATTCCATTCTTAAGGTACCTCACTTTTTTTTTTCTGTTGGCTCATTGGACAATTACTTGCAAGTGGAAGCTGCTATCAGCAAAAGCATTTGTACACAGATGATTGTTGTAGATGCAGATCTTTCGTTAAAATCCTATTGATATGTGTATGCAGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGTGGATCTCTTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCACTGAAGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATTGACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTGTAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTATTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGTTTGGGCTTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATAGATCCATGACGACCTGGGAGCATTGATTGGTATGTGTAAAAAAAAATGTCAGGAAGGTAGTCACTGTACCATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK065520 [AACCCCGCCGTCACTATCTTCATCCGCCGTCCCGACGCCGCGAGCCCAAACCCCTAACCCCGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACGACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGGCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTGCCCTCCGCGCCGCGCTCGGTACCGAGGCTTAAATCCTGTGCACTCTCTCCCAATCCTCGAGTTTTTCTAGGGTTATTATGTAGGATCGTTCGATTGGATTGGGGGTACGCATGTTGGGTAGGTTGGTGTTGGTCCTTACCTATGCAGCGCAATTCTAGATTTGCCCTTCCGTGTTTGTGGATCAGCTCCTGTAGTAGTTCAACCTGAACTGTGGTAGTCTGAAGTTTGTACTGGATGTTTCTGGCCTATGGGTTTGAGTCGTTTCTGCAGAGGCCCTATGTGATGCAAAAACAGTATCGGCTTGAAAAATTGATTGCCACTATTACATAGAAGCAGCTTGAATTTTAGTACAACTCTGTGTGCAGGCACTTGGTATTTTAATACGAGTCTGCATATGGACTAGACTAGATGGAGACATGCTTTTGAAATATAAAAAACAAGGCTAATTATATCTTTTTTTAGTTGAAATCTATAGTACCCCTTTGTTGGAAAACGTGGTAAACTGGTGATTGAATCTAAAAGTAGCACCTGACCATGCACTTTTTGTGATATTTGTAACTGTTGTGTGTCTAGTTATCTGCATTTGATGTAAAGTTAGCTTGGCGTGTTGTGCCGAGGAAGTGATGGGATAACGTTAGTCACATAAATCTTTTCTTATTATAGTAAAAAAACAGGTTTGAAAATAGCAGAACATAATCCCTTTTGAAAATCCACAACAATGCCAATTTCTTCTTTGCCCAACCCATGAAATTTTGTCCTGGGCAATTCATGTAATTTGAAGGGACAACACTAGTTTGTGAATCTGTTATCTTGTTCCTTTTTTACCTGCATGCTATGTTCCTATTAACCTTCATTGGATGGTTTTAAATCTTTGTTTCACTTTCAACACCAATTTGTGGTTACCTTGATTTTTTCTGATGATGTATTCTCTATTCTTCAGTTGTATATTCGGAACAGTGAACTTCCGTGCATACATAGGCTGTCCTGGTTGATTCATCTGTTTGTGTTTGAAACTTATCAAGTTGAAGAGTAGTAGTTTTCCCCCATTAATTTTCACAGAAGCTGCACTGAAACGAAGCACTTTGCTATTGATTGGGTAGAATTGAGTTCAAAAACTGTTGCCAATGCTTTGTATTTTCCATTCTTTTCTAGTGAGGGCTTTAATAAGTCATGTCCTTATGGCATTCTTAACACATTGCTGCAATCCTGTAATGATTACATATGTGTGATGCTTTCACCATGCTAACCATCTCAGTGTGTTGTGGCAAATCTATTTCGTTTTTCTAAATTTCATAGCAAAAATGATTCCATTCTTAAGGTACCTCACTTTTTTTTTTCTGTTGGCTCATTGGACAATTACTTGCAAGTGGAAGCTGCTATCAGCAAAAGCATTTGTACACAGATGATTGTTGTAGATGCAGATCTTTCGTTAAAATCCTATTGATATGTGTATGCAGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGTGGATCTCTTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCACTGAAGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATTGACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTGTAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTATTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGTTTGGGCTTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGT ] [+] EMBL CB652624 [ AACCCCTCACCCCGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACGACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGGCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTGCCCTCCGCGCCGCGCTCGGTACCGAGGCTTAAATCCTGTGCACTCTCTCCCAATCCTCGAGTTTTTCTAGGGTTATTATGTAGGATCGTTCGATTGGATTGGGGGTACGCATGTTGGGTAGGTTGGTGTTGGTCCTTACCTATGCAGCGCAATTCTAGATTTGCCCTTCCGTGTTTGTGGATCAGCTCCTGTAGTAGTTCAACCTGAACTGTGGTAGTCTGAAGTTTGTACTGGATGTTTCTGGCCTATGGGTTTGAGTCGTTTCTGCAGAGGCCCTATGTGATGCAAAAACAGTATCGGCTTGAAAAATTGATTGCCACTATTACATAGAAGCAGCTTGAATTTTAGTACAACTCTGTGTGCAGGCACTTGGTATTTTAATACGAGTCTGCATATGGACTAGACTAGATGGAGACATGCTTTTGAAATATAAAAAACAAGGCTAATTATATCTTTTTTTAGTTGAAATCTATAGTACCCCTTTGTTGGAAAACGTGGTAAACTGGTGATTGAATCTAAAAGTAGCACCTGACCATGCACTTTTTGTGATATTTGTAACTGTTGTGTGTCTAGTTATCTGCATTTGATGTAAAGTTAGCTTGG ] [-] EMBL CB652625 [ AAGTGGAAGCTGCTATCAGCAAAAGCATTTGTACACAGATGATTGTTGTAGATGCAGATCTTTCGTTAAAATCCTATTGATATGTGTATGCAGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTTTGAAGGGGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGTGGATCTCTTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCACTGAAGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATTGACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTGTAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTATTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGTTTGGGCTTGCTTGATGTATAGCAAGATTTGTGAAGAATCATTTCATCAAaaaaa ] [-] EMBL CF335369 [ GCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTTTGAAGGCGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGTGGATCTCTTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCACTGAAGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATTGACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTGTAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTATTGGCTTGTTGCCATCTGCCTCTATCTTTTTATTTTGTATGTTTGGGCTTGCTTGAaaaaaaaaa ] [+] EMBL AK062087 [ CTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGTGGATCTCTTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCACTGAAGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATTGACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTGTAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTATTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGTTTGGGCTTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATAG ] [-] EMBL CF335724 [ CTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTATTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGTTTGGGCTTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATAGATCCATGACGACCTGGGAGCATTGATTGGTATGTGTAAAAAAAA ] [+] EMBL CA754204 [ TTGGGCTTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATAGATCCATGACGACCTGGGAGCATTGATTGGTATGTGTATCCTGCCATGTCAGGAAGGTAGTCACTGTACCATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [GCGCTCTCGTTCTCTGCATACGCGCGTGTATACGGGCGTGGCGCGCTGTTTCGAGGGCACCTCGCGTCGTCCAGCTACTTGCGAAGTCAAACATCAAGAAGGACGCAATTGCTCGTGCTCATCGGCTGGGCTCGAGCCCTCAGTGATATAGTGCAGTGCATTCTGAATTCCCCTGTGAGCATTCATGGGTGCGTAGCAAGAATGCTGAGCACTGTTCATTGTGAAGCGGACCCTCCGGTCGATCATGGTGGCAGAGGGCAACATCTGGGTGTTGTGGATCTCCTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCCCTGAAGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATTGACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTGTAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTGTTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGCTTGGGCTTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATAGATCAAAAAAAAAAAAA] [-] EMBL CA759230 [GCGCTCTCGTTCTCTGCATACGCGCGTGTATACGGGCGTGGCGCGCTGTTTCGAGGGCACCTCGCGTCGTCCAGCTACTTGCGAAGTCAAACATCAAGAAGGACGCAATTGCTCGTGCTCATCGGCTGGGCTCGAGCCCTCAGTGATATAGTGCAGTGCATTCTGAATTCCCCTGTGAGCATTCATGGGTGCGTAGCAAGAATGCTGAGCACTGTTCATTGTGAAGCGGACCCTCCGGTCGATCATGGTGGCAGAGGGCAACATCTGGGTGTTGTGGATCTCCTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCCCTGAAGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATTGACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTGTAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCCTTTTGTTTTGTGTTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGCTTGGGCTTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATAGATCAAAAAAAAAAAAA] consensusID : consensus_13200#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence [CCGCCGTCCCGACGCCGCGAGCCCAAACCCCTAACCCCGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACGACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGGCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTGCCCTCCGCGCCACGCTCGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGGTGGATCTC-TTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGAATGCTGATGAGGCACTGANGTCGGAACTGTAANTCAGAGCAGTNA] [+] EMBL CF335370 [CCGCCGTCCCGACGCCGCGAGCCCAAACCCCTAACCCCGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACGACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGGCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTGCCCTCCGCGCCACGCTCGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGGTGGATCTC TTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAG ] [+] EMBL CA753524 [ GTCCCGACGCCGCGAGCCCAAACCCCTAACCCCGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACGACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGGCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTGCCCTCCGCGCCGCGCTCGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTNGATTCTGAAGGCGACACTCCACTCCATCATGCTGCCAGAAGGGATCATCTGGGTATT GTGGATCTCNNTGC TAAAGCTGGGGCATGTGCCNAG AGGAGANTAC TATGGCCANGT CCTGCTGAGAATGCTGATGAGGCACTGANGTCGGAACTGTAANTCAGAGCAGTNA] consensusID : consensus_13200#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence [CGCCCTTGGACACTGACATGGACTGAGGAGTAGAAAAAACCCCTAACCCCGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACGACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGGCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTGCCCTCCGCGCCGCGCTCGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGTGGATCTCTTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGGGATGGCTGATGAAGGCACTGAAGTCCGGAA] [+] EMBL CF335723 [CGCCCTTGGACACTGACATGGACTGAGGAGTAGAAAAAACCCCTAACCCCGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACGACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGGCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTGCCCTCCGCGCCGCGCTCGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATTGATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCATCATGCTGCCAGAGGGGAACATCTGGGTATTGTGGATCTCTTGCTTAAAGCTGGGGCATGTGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGGGATGGCTGATGAAGGCACTGAAGTCCGGAA] [+] EMBL D42302 [ TATTCTGGCAACATTGATGATCCAATAGAAGATGGTGATACTCTGCTTCACATAGCATGCTTATATGGCCATCTACCTTGTGTTCAGCTACTGTTGGAACGACAAGCTAGCTTGGAATGCAAAGATGAAGAAGGAGCAATTCCTCTTCATGATGCTTGTGCTGGAGGCTTTAGTGATATAGTCa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 AACCCCGCCGTCACTATCTTCATCCGCCGTCCCGACGCCGCGAGCCCAAACCCCTAACCC 60 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 CGGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGAC 120 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 GACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAG 180 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 GCGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCT 240 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 GCCCTCCGCGCCGCGCTCGGTACCGAGGCTTAAATCCTGTGCACTCTCTCCCAATCCTCG 300 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 AGTTTTTCTAGGGTTATTATGTAGGATCGTTCGATTGGATTGGGGGTACGCATGTTGGGT 360 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 AGGTTGGTGTTGGTCCTTACCTATGCAGCGCAATTCTAGATTTGCCCTTCCGTGTTTGTG 420 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 GATCAGCTCCTGTAGTAGTTCAACCTGAACTGTGGTAGTCTGAAGTTTGTACTGGATGTT 480 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 TCTGGCCTATGGGTTTGAGTCGTTTCTGCAGAGGCCCTATGTGATGCAAAAACAGTATCG 540 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 GCTTGAAAAATTGATTGCCACTATTACATAGAAGCAGCTTGAATTTTAGTACAACTCTGT 600 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 GTGCAGGCACTTGGTATTTTAATACGAGTCTGCATATGGACTAGACTAGATGGAGACATG 660 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 CTTTTGAAATATAAAAAACAAGGCTAATTATATCTTTTTTTAGTTGAAATCTATAGTACC 720 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 CCTTTGTTGGAAAACGTGGTAAACTGGTGATTGAATCTAAAAGTAGCACCTGACCATGCA 780 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 CTTTTTGTGATATTTGTAACTGTTGTGTGTCTAGTTATCTGCATTTGATGTAAAGTTAGC 840 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 TTGGCGTGTTGTGCCGAGGAAGTGATGGGATAACGTTAGTCACATAAATCTTTTCTTATT 900 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 ATAGTAAAAAAACAGGTTTGAAAATAGCAGAACATAATCCCTTTTGAAAATCCACAACAA 960 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 TGCCAATTTCTTCTTTGCCCAACCCATGAAATTTTGTCCTGGGCAATTCATGTAATTTGA 1020 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 AGGGACAACACTAGTTTGTGAATCTGTTATCTTGTTCCTTTTTTACCTGCATGCTATGTT 1080 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 CCTATTAACCTTCATTGGATGGTTTTAAATCTTTGTTTCACTTTCAACACCAATTTGTGG 1140 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 TTACCTTGATTTTTTCTGATGATGTATTCTCTATTCTTCAGTTGTATATTCGGAACAGTG 1200 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 AACTTCCGTGCATACATAGGCTGTCCTGGTTGATTCATCTGTTTGTGTTTGAAACTTATC 1260 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 AAGTTGAAGAGTAGTAGTTTTCCCCCATTAATTTTCACAGAAGCTGCACTGAAACGAAGC 1320 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 ACTTTGCTATTGATTGGGTAGAATTGAGTTCAAAAACTGTTGCCAATGCTTTGTATTTTC 1380 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 CATTCTTTTCTAGTGAGGGCTTTAATAAGTCATGTCCTTATGGCATTCTTAACACATTGC 1440 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 -------------------CCGCCGTCCCGACGCCGCGAGCCCAAA---CCCCTAACCCC 38 consensus_13200#3 ----------CGCCCTTGGACACTGACATGGACTGAGGAGTAGAAAAAACCCCTAACCCC 50 consensus_13200#0 TGCAATCCTGTAATGATTACATATGTGTGATGCTTTCACCATGCTAACCATCTCAGTGTG 1500 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 GGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACG 98 consensus_13200#3 GGAGAGCCTCCTCGCCGCAGATGGCAGTCCCCGGCCGCCGCGACGACCTCGTCGGCGACG 110 consensus_13200#0 TTGTGGCAAATCTATTTCGTTTTTCTAAATTTCATAGCAAAAATGATTCCATTCTTAAGG 1560 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 ACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGG 158 consensus_13200#3 ACCTCGTCGACGACGACGGGATCGGCGAGGAGTACATGGCCCCCTCCGACGACGAGGAGG 170 consensus_13200#0 TACCTCACTTTTTTTTTTCTGTTGGCTCATTGGACAATTACTTGCAAGTGGAAGCTGCTA 1620 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 CGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTG 218 consensus_13200#3 CGCAACTGCCTGACGAACTCTTCCGCCTCGCCGACGCCGCCCAGTCCGGCAACGTCGCTG 230 consensus_13200#0 TCAGCAAAAGCATTTGTACACAGATGATTGTTGTAGATGCAGATCTTTCGTTAAAATCCT 1680 consensus_13200#1 ------------------------------------------------------------ consensus_13200#2 CCCTCCGCGCCACGCTCGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTG 278 consensus_13200#3 CCCTCCGCGCCGCGCTCGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTG 290 consensus_13200#0 ATTGATATGTGTATGCAGATAATTATTCTGGCAACATTGATGATCCAATAGAAGATGGTG 1740 consensus_13200#1 ---------------------------------------------------------GCG 3 * * consensus_13200#2 ATACTCTGCTTCACATA-GCATGCTTATATGGCCATC-TACCTTGTGTTCAGCTACTGTT 336 consensus_13200#3 ATACTCTGCTTCACATA-GCATGCTTATATGGCCATC-TACCTTGTGTTCAGCTACTGTT 348 consensus_13200#0 ATACTCTGCTTCACATA-GCATGCTTATATGGCCATC-TACCTTGTGTTCAGCTACTGTT 1798 consensus_13200#1 CTCTCGTTCTCTGCATACGCGCGTGTATACGGGCGTGGCGCGCTGTTTCGAGGGCACCTC 63 * * ** **** ** * **** ** * * * *** * ** * consensus_13200#2 GGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGA-GCAATTCCTCTTCATGAT- 394 consensus_13200#3 GGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGA-GCAATTCCTCTTCATGAT- 406 consensus_13200#0 GGAACGTCAAGCTAGCTTGGAATGCAAAGATGAAGAAGGA-GCAATTCCTCTTCATGAT- 1856 consensus_13200#1 GCGTCGTCCAGCTACTTGCGAAGTCAAACATCAAGAAGGACGCAATTGCTCGTGCTCATC 123 * **** ***** * *** **** ** ******** ****** *** * * ** consensus_13200#2 GCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATT 454 consensus_13200#3 GCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATT 466 consensus_13200#0 GCTTGTGCTGGAGGCTTTAGTGATATAGTCCAGTACATTTTGAATTTTGCTGCGAACATT 1916 consensus_13200#1 GGCTGGGCTCGAGCCCTCAGTGATATAGTGCAGTGCATTCTGAATTCCCCTGTGAGCATT 183 * ** *** *** * * *********** **** **** ****** *** ** **** consensus_13200#2 GATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCAT 514 consensus_13200#3 GATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCAT 526 consensus_13200#0 GATGGCTGCGTAACAAGAATGCTCAACACTGTTGATTCTGAAGGCGACACTCCACTCCAT 1976 consensus_13200#1 CATGGGTGCGTAGCAAGAATGCTGAGCACTGTTCATTGTGAAGCGGACCCTCCGGTCGAT 243 **** ****** ********** * ******* *** ***** *** **** ** ** consensus_13200#2 CATGCTGCCAGAGGGGAACATCTGGGTATTGGTGGATCTCTTGCTTAAAGCTGGGGCATG 574 consensus_13200#3 CATGCTGCCAGAGGGGAACATCTGGGTATTG-TGGATCTCTTGCTTAAAGCTGGGGCATG 585 consensus_13200#0 CATGCTGCCAGAGGGGAACATCTGGGTATTG-TGGATCTCTTGCTTAAAGCTGGGGCATG 2035 consensus_13200#1 CATGGTGGCAGAGGGCAACATCTGGGTGTTG-TGGATCTCCTGCTTAAAGCTGGGGCATG 302 **** ** ******* *********** *** ******** ******************* consensus_13200#2 TGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGAATGCTGATGA-GGCACTGA 633 consensus_13200#3 TGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGGGATGGCTGATGAAGGCACTGA 645 consensus_13200#0 TGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCACTGA 2095 consensus_13200#1 TGCCAAGAAGGAGAATACTTATGGCCAGGTCCCTGCTGAGATGGCTGATGAAGGCCCTGA 362 ************************************** ** ******** *** **** consensus_13200#2 NGTCGGAAC--TGTAANTCAGAGCAGTNA------------------------------- 660 consensus_13200#3 AGTCCGGAA--------------------------------------------------- 654 consensus_13200#0 AGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATT 2155 consensus_13200#1 AGTCCGGAAACTGTTAATTCAAGAGCAAGTTGAGGCCAGCACACATACTAGCAATTAATT 422 *** * * consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 GACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTG 2215 consensus_13200#1 GACGTATGGCAATCCTTAGTTGAAATTGGTAAAATGAGTTACTGTCAGGCTGAATATCTG 482 consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 TAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCC 2275 consensus_13200#1 TAGTCATTGGAACTGTGTAGTGGTATGCGGGAAACATCGGCAAACCATCCATCACCACCC 542 consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 TTTTGTTTTGTATTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGTTTGGGC 2335 consensus_13200#1 TTTTGTTTTGTGTTGGCTTGTTGCCATCTGCCTCTATCTTTCTATTTCGTATGCTTGGGC 602 consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 TTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATAGATCCATG 2395 consensus_13200#1 TTGCTTGATGTCTAGCAAGATTTGTGAAGAATCATTTCATCAATAGTTGATAGATCAAAA 662 consensus_13200#2 ------------------------------------------------------------ consensus_13200#3 ------------------------------------------------------------ consensus_13200#0 ACGACCTGGGAGCATTGATTGGTATGTGTAAAAAAAAATGTCAGGAAGGTAGTCACTGTA 2455 consensus_13200#1 AAAAAAAAA--------------------------------------------------- 671 consensus_13200#2 ------------------------------------------ consensus_13200#3 ------------------------------------------ consensus_13200#0 CCATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2497 consensus_13200#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||