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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2116 fasta sequence
[CATTTCGCATTGAATTGTCAATACCATAAAAGGAGATGATGCCAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCCCACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATCTCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGAGTTCTTGAGAGACATATGGTTTGTGCATGCTTCACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTGACAGTGATCTAATCATCATTAAGACTGAATTTATTTTTGTTGATGAGAAGTTATTTGACTTCTTTTGTTATGTCCCCTTCTCCAATTTTTGCCACCAGTTGCTGTCTGCCATACAAGCCCATTTTTATGCTTCCAACTTGGTACAGGAATATATGCATGACTGACATAAATTTCCTAAGAATCAGATTTCTGTCTCTCAAGTTGCAACCTGAAACTCTCATCCTTATCACAAACAAAGACCTGATTTATCCTAGTTGTCTCGTCCTAATCATTTGCATCTAGATTCTTGAACTCCAAACACTAGATTGTTTTTGCAGATATCAACAGATAAAAAAAAATCCTCTAAATTGCTGTGTTTTCTACACCTGAAATTCTGAACATGTCAAACTCATCAGTTAACTGTCATCAGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGGTAAACTTCAAACATCTTTGCAACAATATCTACACAGACAGTTTCAGACAGCAAGAATCATGTATTTATATGAGTGAGTTACAGTAACCTAACATGTCTGAAAATTTGATGTTTTTTTTCTTTTCTTTCAGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCC-TCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAA-CCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTACAAAAAACCTCTAGCCATCACCTTGATTGGCTTCTTTATGTTGACAAAAA]
[+] EMBL CB678643 [CATTTCGCATTGAATTGTCAATACCATAAAAGGAGATGATGCCAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCCCACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATCTCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCCAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAAAAGG ]
[+] EMBL AK062458 [ CATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGAGTTCTTGAGAGACATATGGTTTGTGCATGCTTCACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTGACAGTGATCTAATCATCATTAAGACTGAATTTATTTTTGTTG ]
[+] EMBL AK102403 [ ATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGAGTTCTTGAGAGACATATGGTTTGTGCATGCTTCACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTGACAGTGATCTAATCATCATTAAGACTGAATTTATTTTTGTTGATGAGAAGTTATTTGACTTCTTTTGTTATGTCCCCTTCTCCAATTTTTGCCACCAGTTGCTGTCTGCCATACAAGCCCATTTTTATGCTTCCAACTTGGTACAGGAATATATGCATGACTGACATAAATTTCCTAAGAATCAGATTTCTGTCTCTCAAGTTGCAACCTGAAACTCTCATCCTTATCACAAACAAAGACCTGATTTATCCTAGTTGTCTCGTCCTAATCATTTGCATCTAGATTCTTGAACTCCAAACACTAGATTGTTTTTGCAGATATCAACAGATAAAAAAAAATCCTCTAAATTGCTGTGTTTTCTACACCTGAAATTCTGAACATGTCAAACTCATCAGTTAACTGTCATCAGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGGTAAACTTCAAACATCTTTGCAACAATATCTACACAGACAGTTTCAGACAGCAAGAATCATGTATTTATATGAGTGAGTTACAGTAACCTAACATGTCTGAAAATTTGATGTTTTTTTTCTTTTCTTTCAGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCC TCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAA CCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGG ]
[-] EMBL CF276679 [ AAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCCTTCCTCCATCTTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACTTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTACAAAAAA ]
[+] EMBL BM420693 [ TATCA CAGCATGGCACAGCCAGAAGCCATGCTGCTGCC TCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAA CCAAGAAC ATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACNATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACAC ATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAATGAACGGCTGCTGCATGCTCCCTCTAGCCATCACCTTGATTGGCTTCTTTATGTTGACAAAAA]
consensusID : consensus_13208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1473 fasta sequence
[ATGTATCATGGTGCCCCAGCATTTGGATTGAATTGTCAATACCATAAAAGGAGATGATGCCAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCCCACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATCTCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGC-GGCGGTGGCGCCGGTGGCGTGAGGTTGTTC-GGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTAAAAAA]
[+] EMBL AK062109 [ATGTATCATGGTGCCCCAGCATTTGGATTGAATTGTCAATACCATAAAAGGAGATGATGCCAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCCCACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATCTCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGC GGCGGTGGCGCCGGTGGCGTGAGGTTGTTC GGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGG ]
[+] EMBL CF276678 [ ATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGC ]
[+] EMBL CF311200 [ TGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGC GGCGGTGGCGCCGGTGGCGTGAGGTTGTTC GGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCANGAGAGGAAGAAGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAA ]
[+] EMBL CF294036 [ TCCTTATAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACATTGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGATAGTGGCGGCGGTTATGGC GGCGGTGGCGCCGGTGGCGTGAGGTTGTTC GGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGC ]
[-] EMBL CF294035 [ GAAGAGAAGATCCAGCCTCCTTGACGTGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGNTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATTTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTAAAAAA]
[+] EMBL CF309591 [ ACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTT ]
consensusID : consensus_13208#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[TGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCAC]
[+] EMBL CF314990 [TGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13208#1 ATGTATCATGGTGCCCCAGCATTTGGATTGAATTGTCAATACCATAAAAGGAGATGATGC 60
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 ------------------CATTTCGCATTGAATTGTCAATACCATAAAAGGAGATGATGC 42
consensus_13208#1 CAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCC 120
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 CAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCC 102
consensus_13208#1 CACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATC 180
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 CACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATC 162
consensus_13208#1 TCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTT 240
consensus_13208#2 ------TGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTT 54
consensus_13208#0 TCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTT 222
******************************************************
consensus_13208#1 CTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTG 300
consensus_13208#2 CTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTG 114
consensus_13208#0 CTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTG 282
************************************************************
consensus_13208#1 CCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCC 360
consensus_13208#2 CCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCC 174
consensus_13208#0 CCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCC 342
************************************************************
consensus_13208#1 AGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGC 420
consensus_13208#2 AGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCG-------------------- 214
consensus_13208#0 AGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGC 402
****************************************
consensus_13208#1 GCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAG 480
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 GCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAG 462
consensus_13208#1 TGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCC 540
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCC 522
consensus_13208#1 GCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTG 600
consensus_13208#2 -------------CCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTG 261
consensus_13208#0 GCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTG 582
***********************************************
consensus_13208#1 TCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCG 660
consensus_13208#2 TCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCG 321
consensus_13208#0 TCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCG 642
************************************************************
consensus_13208#1 AGAGCTCAGGAGAGGAAGAAGGG-TGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCT 719
consensus_13208#2 AGAGCTCAGGAGAGGAAGAAGGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCT 381
consensus_13208#0 AGAGCTCAGGAGAGGAAGAAGGGTGAGTTCTTGAG--AGACATATGGTTTGTGCATGCTT 700
*********************** * * ** * * * * ** * *
consensus_13208#1 GGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGC--GGCATTTCCCGGCACTTCGTC 777
consensus_13208#2 GGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGC--GGCATTTCCCGGCACTTCGTC 439
consensus_13208#0 CACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTGACAGTGATCTAATCATCATT 760
* * * * * * ** * * * * ** * * * ** *
consensus_13208#1 ACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGC 837
consensus_13208#2 AC---------------------------------------------------------- 441
consensus_13208#0 AAGACTGAATTTATTTTTGTTGATGAGAAGTTATTTGACTTCTTTTGTTATGTCCCCTTC 820
*
consensus_13208#1 AGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGATTGAGGATGCAGAAAAG 897
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TCCAATTTTTGCCACCAGTTGCTGTCTGCCATACAAGCCCATTTTTATGCTTCCAACTTG 880
consensus_13208#1 GCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAA 957
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 GTACAGGAATATATGCATGACTGACATAAATTTCCTAAGAATCAGATTTCTGTCTCTCAA 940
consensus_13208#1 ATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTG 1017
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 GTTGCAACCTGAAACTCTCATCCTTATCACAAACAAAGACCTGATTTATCCTAGTTGTCT 1000
consensus_13208#1 CTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGC 1077
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 CGTCCTAATCATTTGCATCTAGATTCTTGAACTCCAAACACTAGATTGTTTTTGCAGATA 1060
consensus_13208#1 AGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAA 1137
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TCAACAGATAAAAAAAAATCCTCTAAATTGCTGTGTTTTCTACACCTGAAATTCTGAACA 1120
consensus_13208#1 CTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAG 1197
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TGTCAAACTCATCAGTTAACTGTCATCAGGTGTTCCATGGACTGAAGAGGAGCACAGGAA 1180
consensus_13208#1 CCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGA 1257
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 ATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTT 1240
consensus_13208#1 GAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAA 1317
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 CGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCA 1300
consensus_13208#1 GGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCT 1377
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 GAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGGTAAACTTCAAACA 1360
consensus_13208#1 TCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTA 1437
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TCTTTGCAACAATATCTACACAGACAGTTTCAGACAGCAAGAATCATGTATTTATATGAG 1420
consensus_13208#1 GTCTTGCAAATAATAAAAGGAACGGCTGCTAAAAAA------------------------ 1473
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TGAGTTACAGTAACCTAACATGTCTGAAAATTTGATGTTTTTTTTCTTTTCTTTCAGATT 1480
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 GAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCC 1540
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAG 1600
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 CCAGAAGCCATGCTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCA 1660
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 GCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCA 1720
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 AAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTC 1780
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 CGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTC 1840
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 ACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAAT 1900
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAA 1960
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 AACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTT 2020
consensus_13208#1 ------------------------------------------------------------
consensus_13208#2 ------------------------------------------------------------
consensus_13208#0 TACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTACAAAAAACCTCTAG 2080
consensus_13208#1 ------------------------------------
consensus_13208#2 ------------------------------------
consensus_13208#0 CCATCACCTTGATTGGCTTCTTTATGTTGACAAAAA 2116
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||