These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2116 fasta sequence [CATTTCGCATTGAATTGTCAATACCATAAAAGGAGATGATGCCAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCCCACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATCTCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGAGTTCTTGAGAGACATATGGTTTGTGCATGCTTCACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTGACAGTGATCTAATCATCATTAAGACTGAATTTATTTTTGTTGATGAGAAGTTATTTGACTTCTTTTGTTATGTCCCCTTCTCCAATTTTTGCCACCAGTTGCTGTCTGCCATACAAGCCCATTTTTATGCTTCCAACTTGGTACAGGAATATATGCATGACTGACATAAATTTCCTAAGAATCAGATTTCTGTCTCTCAAGTTGCAACCTGAAACTCTCATCCTTATCACAAACAAAGACCTGATTTATCCTAGTTGTCTCGTCCTAATCATTTGCATCTAGATTCTTGAACTCCAAACACTAGATTGTTTTTGCAGATATCAACAGATAAAAAAAAATCCTCTAAATTGCTGTGTTTTCTACACCTGAAATTCTGAACATGTCAAACTCATCAGTTAACTGTCATCAGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGGTAAACTTCAAACATCTTTGCAACAATATCTACACAGACAGTTTCAGACAGCAAGAATCATGTATTTATATGAGTGAGTTACAGTAACCTAACATGTCTGAAAATTTGATGTTTTTTTTCTTTTCTTTCAGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCC-TCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAA-CCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTACAAAAAACCTCTAGCCATCACCTTGATTGGCTTCTTTATGTTGACAAAAA] [+] EMBL CB678643 [CATTTCGCATTGAATTGTCAATACCATAAAAGGAGATGATGCCAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCCCACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATCTCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCCAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAAAAGG ] [+] EMBL AK062458 [ CATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGAGTTCTTGAGAGACATATGGTTTGTGCATGCTTCACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTGACAGTGATCTAATCATCATTAAGACTGAATTTATTTTTGTTG ] [+] EMBL AK102403 [ ATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGAGTTCTTGAGAGACATATGGTTTGTGCATGCTTCACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTGACAGTGATCTAATCATCATTAAGACTGAATTTATTTTTGTTGATGAGAAGTTATTTGACTTCTTTTGTTATGTCCCCTTCTCCAATTTTTGCCACCAGTTGCTGTCTGCCATACAAGCCCATTTTTATGCTTCCAACTTGGTACAGGAATATATGCATGACTGACATAAATTTCCTAAGAATCAGATTTCTGTCTCTCAAGTTGCAACCTGAAACTCTCATCCTTATCACAAACAAAGACCTGATTTATCCTAGTTGTCTCGTCCTAATCATTTGCATCTAGATTCTTGAACTCCAAACACTAGATTGTTTTTGCAGATATCAACAGATAAAAAAAAATCCTCTAAATTGCTGTGTTTTCTACACCTGAAATTCTGAACATGTCAAACTCATCAGTTAACTGTCATCAGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGGTAAACTTCAAACATCTTTGCAACAATATCTACACAGACAGTTTCAGACAGCAAGAATCATGTATTTATATGAGTGAGTTACAGTAACCTAACATGTCTGAAAATTTGATGTTTTTTTTCTTTTCTTTCAGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCC TCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAA CCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGG ] [-] EMBL CF276679 [ AAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCCTTCCTCCATCTTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACTTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTACAAAAAA ] [+] EMBL BM420693 [ TATCA CAGCATGGCACAGCCAGAAGCCATGCTGCTGCC TCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAA CCAAGAAC ATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACNATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACAC ATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAATGAACGGCTGCTGCATGCTCCCTCTAGCCATCACCTTGATTGGCTTCTTTATGTTGACAAAAA] consensusID : consensus_13208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1473 fasta sequence [ATGTATCATGGTGCCCCAGCATTTGGATTGAATTGTCAATACCATAAAAGGAGATGATGCCAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCCCACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATCTCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGC-GGCGGTGGCGCCGGTGGCGTGAGGTTGTTC-GGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTAAAAAA] [+] EMBL AK062109 [ATGTATCATGGTGCCCCAGCATTTGGATTGAATTGTCAATACCATAAAAGGAGATGATGCCAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCCCACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATCTCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGC GGCGGTGGCGCCGGTGGCGTGAGGTTGTTC GGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGG ] [+] EMBL CF276678 [ ATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGGCGGTGGCGCCGGTGGCGTGAGGTTGTTCGGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGC ] [+] EMBL CF311200 [ TGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGC GGCGGTGGCGCCGGTGGCGTGAGGTTGTTC GGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCANGAGAGGAAGAAGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACGACAA ] [+] EMBL CF294036 [ TCCTTATAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACATTGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGATAGTGGCGGCGGTTATGGC GGCGGTGGCGCCGGTGGCGTGAGGTTGTTC GGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCCGCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGC ] [-] EMBL CF294035 [ GAAGAGAAGATCCAGCCTCCTTGACGTGATTGAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGNTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATTTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTAAAAAA] [+] EMBL CF309591 [ ACTGTCCGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTT ] consensusID : consensus_13208#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [TGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCAC] [+] EMBL CF314990 [TGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTTCTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTGCCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCCAGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13208#1 ATGTATCATGGTGCCCCAGCATTTGGATTGAATTGTCAATACCATAAAAGGAGATGATGC 60 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 ------------------CATTTCGCATTGAATTGTCAATACCATAAAAGGAGATGATGC 42 consensus_13208#1 CAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCC 120 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 CAATGTGTGTGTCCCCTTCCATTGGCACCAGGTGTTAGCTCCTCAGCTAGTTGCTTGTCC 102 consensus_13208#1 CACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATC 180 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 CACACCACATCTTTCTTTCTCCTCCCTTATTAAGCTACTAGATGCTGCTATTGCTACATC 162 consensus_13208#1 TCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTT 240 consensus_13208#2 ------TGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTT 54 consensus_13208#0 TCCACATGCACCATCTTATCTCAACTCCTTAGAATTCCCACTCCTCTTCTTCTTGTTCTT 222 ****************************************************** consensus_13208#1 CTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTG 300 consensus_13208#2 CTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTG 114 consensus_13208#0 CTTGCTTCCCTCCAACTTCTTCTTCTTGTTGTTCTTGCTGTTCTTGTGGTTCTTGGCCTG 282 ************************************************************ consensus_13208#1 CCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCC 360 consensus_13208#2 CCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCC 174 consensus_13208#0 CCATCGGCGGCGAGCATGGCCAGGAAATGCTCCAGCTGCGGGAACAATGGCCACAACTCC 342 ************************************************************ consensus_13208#1 AGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGC 420 consensus_13208#2 AGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCG-------------------- 214 consensus_13208#0 AGGACTTGCACCGGCCAAAGGAGCCTGCAGGAGAGTGGCGGCGGTTATGGCGGCGGTGGC 402 **************************************** consensus_13208#1 GCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAG 480 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 GCCGGTGGCGTGAGGTTGTTCGGGGTGCAGTTGCACGTCGGCGGTGCGCCTCTGAAGAAG 462 consensus_13208#1 TGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCC 540 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCC 522 consensus_13208#1 GCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTG 600 consensus_13208#2 -------------CCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTG 261 consensus_13208#0 GCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTG 582 *********************************************** consensus_13208#1 TCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCG 660 consensus_13208#2 TCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCG 321 consensus_13208#0 TCGGTGGAGGAGGCCGGCGAGAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCG 642 ************************************************************ consensus_13208#1 AGAGCTCAGGAGAGGAAGAAGGG-TGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCT 719 consensus_13208#2 AGAGCTCAGGAGAGGAAGAAGGGGTGTTCCATGGACTGAAGAGGAGCACAGGAAATTCCT 381 consensus_13208#0 AGAGCTCAGGAGAGGAAGAAGGGTGAGTTCTTGAG--AGACATATGGTTTGTGCATGCTT 700 *********************** * * ** * * * * ** * * consensus_13208#1 GGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGC--GGCATTTCCCGGCACTTCGTC 777 consensus_13208#2 GGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGC--GGCATTTCCCGGCACTTCGTC 439 consensus_13208#0 CACTAATTTGTTGTGGTTTAGCACTAATTACAGCCACCTGACAGTGATCTAATCATCATT 760 * * * * * * ** * * * * ** * * * ** * consensus_13208#1 ACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGC 837 consensus_13208#2 AC---------------------------------------------------------- 441 consensus_13208#0 AAGACTGAATTTATTTTTGTTGATGAGAAGTTATTTGACTTCTTTTGTTATGTCCCCTTC 820 * consensus_13208#1 AGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGATTGAGGATGCAGAAAAG 897 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TCCAATTTTTGCCACCAGTTGCTGTCTGCCATACAAGCCCATTTTTATGCTTCCAACTTG 880 consensus_13208#1 GCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCCTCTGTGCCTGCTGAA 957 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 GTACAGGAATATATGCATGACTGACATAAATTTCCTAAGAATCAGATTTCTGTCTCTCAA 940 consensus_13208#1 ATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAGCCAGAAGCCATGCTG 1017 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 GTTGCAACCTGAAACTCTCATCCTTATCACAAACAAAGACCTGATTTATCCTAGTTGTCT 1000 consensus_13208#1 CTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCAGCAGTGAGCAGCAGC 1077 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 CGTCCTAATCATTTGCATCTAGATTCTTGAACTCCAAACACTAGATTGTTTTTGCAGATA 1060 consensus_13208#1 AGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCCTCAGGTGCAA 1137 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TCAACAGATAAAAAAAAATCCTCTAAATTGCTGTGTTTTCTACACCTGAAATTCTGAACA 1120 consensus_13208#1 CTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTCCGTCAGAACGATCAG 1197 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TGTCAAACTCATCAGTTAACTGTCATCAGGTGTTCCATGGACTGAAGAGGAGCACAGGAA 1180 consensus_13208#1 CCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTCACTTGAACTTAAAGA 1257 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 ATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTT 1240 consensus_13208#1 GAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAATTATTTGTGCCTAAAA 1317 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 CGTCACGACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCA 1300 consensus_13208#1 GGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAAAACACAATGCCATCT 1377 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 GAGCAGCCTCACGCAGAAGAAGAGAAGATCCAGCCTCTTTGACGTGGTAAACTTCAAACA 1360 consensus_13208#1 TCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTTTACTGGACTAATCTA 1437 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TCTTTGCAACAATATCTACACAGACAGTTTCAGACAGCAAGAATCATGTATTTATATGAG 1420 consensus_13208#1 GTCTTGCAAATAATAAAAGGAACGGCTGCTAAAAAA------------------------ 1473 consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TGAGTTACAGTAACCTAACATGTCTGAAAATTTGATGTTTTTTTTCTTTTCTTTCAGATT 1480 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 GAGGATGCAGAAAAGGCTCCGAGTGTGAATGAACGTCTGAAACTGAGACACGAGACAGCC 1540 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TCTGTGCCTGCTGAAATGGGATTCCCTGCACTGTCACTGGGTATCAGCAGCATGGCACAG 1600 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 CCAGAAGCCATGCTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGCTGTTCATCACCA 1660 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 GCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCA 1720 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 AAGCCTCAGGTGCAACTGCAACTCCAGCCACCTGATCTGGAGCTCAAGATCTCGACTGTC 1780 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 CGTCAGAACGATCAGCCCAGTTCGTCGCCGAGGACGCCTTTTTTGGGGACAATCAGGGTC 1840 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 ACTTGAACTTAAAGAGAGAGAGAAGAAGAAGAAAAGGAATTATCTTAGAGATTACTGAAT 1900 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TATTTGTGCCTAAAAGGAGAAGCTTTTGCTAGTGGTGTATGTGTGTGTCCCCTTGGCAAA 1960 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 AACACAATGCCATCTTCCACCATGTATCATTTTTATAAGGCTATTAGGAAGTGAAGCTTT 2020 consensus_13208#1 ------------------------------------------------------------ consensus_13208#2 ------------------------------------------------------------ consensus_13208#0 TACTGGACTAATCTAGTCTTGCAAATAATAAAAGGAACGGCTGCTACAAAAAACCTCTAG 2080 consensus_13208#1 ------------------------------------ consensus_13208#2 ------------------------------------ consensus_13208#0 CCATCACCTTGATTGGCTTCTTTATGTTGACAAAAA 2116 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||