These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1715 fasta sequence [TTCATTCGCGAATCCTTCACGGTCGGACTCGT-CTTCTCCGGTCTCCCCAAATCGCCAAATCTAACCTCTCGCCTCGACCCCCACCCCCTCTACGCCTCGCCATGGCGTCCGACACCAAGGCAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACGAGCCCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAGGCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCCTCGCCGAGGATCCGGCCGGCCGCAGAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCCCGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCCGCCCCGCCGCGGCCATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGGAATTATGAAGAAAAGACTCTCTCAGGTATTGTTCACATACTGACCCCAAATATACGATCAGAAATGTCTCAGCAGAACGATGCACCTGAACAGAATCAAGTAGGGGCAGCTGCAGCAATGAGTGTAACTGGAGCAGAAATGGAAGATGTTCAGGTGGAAGAAGCTGCTGATAACATGCAGAATGATGATCCTCTGAGTCGTTTCCTTCCTCCTCCTGTGACTGCAAAATGTTCTGCAGCACTACAGCAAAAGATCAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATAGAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACCAGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATTACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGAAAAAGAG-TGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAATTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCA-TTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACA-AGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTATAATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCCTATGTGTTGCTATTTTTACTATAAGCTGCTTTTTGGGCGTATTGGCATTTCTCAAGGGTGACATACTAACCTCATCTTGCCATGTTTAGGACATTTTCTTGATTTTGGGCGGATTTAAACTCAATAAATTTCCGCTTTCCCGTCGGTAAAAAAAAA] [+] EMBL AK072034 [TTCATTCGCGAATCCTTCACGGTCGGACTCGT CTTCTCCGGTCTCCCCAAATCGCCAAATCTAACCTCTCGCCTCGACCCCCACCCCCTCTACGCCTCGCCATGGCGTCCGACACCAAGGCAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACGAGCCCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAGGCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCCTCGCCGAGGATCCGGCCGGCCGCAGAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCCCGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCCGCCCCGCCGCGGCCATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGGAATTATGAAGAAAAGACTCTCTCAGGTATTGTTCACATACTGACCCCAAATATACGATCAGAAATGTCTCAGCAGAACGATGCACCTGAACAGAATCAAGTAGGGGCAGCTGCAGCAATGAGTGTAACTGGAGCAGAAATGGAAGATGTTCAGGTGGAAGAAGCTGCTGATAACATGCAGAATGATGATCCTCTGAGTCGTTTCCTTCCTCCTCCTGTGACTGCAAAATGTTCTGCAGCACTACAGCAAAAGATCAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATAGAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACCAGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATTACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGAAAAAGAG TGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAATTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCA TTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACA AGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTATAACGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCCTATGTGTTGCTATTTTTACTATAAGCTGCTTTTTGG ] [+] EMBL CB676263 [ CTCGTCCCTTTAAAGGCTCCCCAAATCGCCAAATCTAACCTCTCGCCTCGACCCCCACCCCCTCTACGCCTCGCCATGGCCTCAAAAACCAAGGCAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACNAGCCCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAGGCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCCTCGCCGAGGATCCGGCCGGCCGCAGAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCGCGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCCGCCCCGGCGCGGCCATGCCGCCGGGCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGGCATGTCGCCGGAGCAGGAGGATGGGGAGATCAATGGCATATACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGGAATTATGAAGAAAAGACTCTCTCAAGCATTGTTGACATACTGACCCC ] [+] EMBL CB645962 [ TCCGGTCTCCCCAAATCGCCAAATCTAACCTCTCGCCTCGACCCCCACCCCCTCTACGCCTCGCCATGGCGTCCGACACCAAGGCAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACGAGCCCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAGGCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCCTCGCCGAGGATCCGGCCGGCCGCAAAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCCCGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCCGCCCCGCCGCGGACATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGTGTGGACCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGGCATGTCGCCCGAGCACGAGGATGGGGAGATCAATGGCATACACAGATCGGGCCTGGATGCTCAGGTTGCTGA ] [+] EMBL CB646806 [ CTCGCCTCTACCCCCACCCCCTCTACGCCTCGCCATGGCGTCCGACACCAAGGCAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACGAGCCCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAGGCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCCTCGCCGAGGATCCGGCCGGCCGCAGAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCCCGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCCGCCCCGCCGCGGCCATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGGAATTATGAAGAAAAGACTCTCTCAGGTATTGTTCACATACTGACCCCAGATATACGATCGGAAATGTCTCAGCAGAACGATGCACCTGAACAGAATCAAGTAGGGGCAGCTGCAGCAATGAGTGTAACTGGAGCAAAAATGGAAGATGTTCACGTGGAAGAAGCTGCTGATAACTTGCAGAATG ] [-] EMBL CB646807 [ TCTGCAGCACTACAGCAAAAGATCAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATAGAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACCAGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATTACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGAAAAAGAG TGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAATTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCA TTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACA AGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTATAATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCC ] [-] EMBL CB645963 [ CAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATAGAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACCAGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATTACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGAAAAAGAG TGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAATTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCA TTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACA AGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTATAATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCCTATGTGTTGCTATTTTTACTATAAGCTGCTTTTTGGGCGTATTGGCATTTCTCAA ] [-] EMBL CB676264 [ CAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATAGAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACCAGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATTACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGAAAAAGAG TGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAATTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCA TTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACA AGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTTTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTATAATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCCTATGTGTTGCTATTTTTAGTATAAGCTGCTTTTTGGGCGTATTGGCATTTCTC ] [+] EMBL BI813431 [ AGAAGAAAAAGAGTTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCCATTAGTGC GC ATACCGAAAATT CAGCTGCTGTATCA CA CAGCTGCTGCTGGTGCACCACTTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCCAACACAGAAGTCCAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCA CCGCGCTTCTAACTTCAGCCAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACCAAAGAGGAAAGAAGCTGAAGAAAAGAAAACCAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATA CCTTATAATGTGAAAAAAAAAA CTTCAAGAATTGCCCAAAAAAaaaa ] [+] EMBL CA756227 [ GGATATTAAGAACCCTGTGGCTCCNAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTATAATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCCTATGTGTTGCTATTTTTACTATAAGCTGCTTTTTGGGCGTATTGGCATTTCTCAAGGGTGACATACTAACCTCATCTTGCCATGTTTAGGACATTTTCTTGATTTTGGGCGGATTTAAACTCAATAAATTTCCGCTTTCCCGTCGGTAAAAAAAAA] consensusID : consensus_13213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1525 fasta sequence [CATTCGCGAATCCTTCACGGTCGGACTCGTCTTCTCCGGTCTCCCCAAGTCGCCAAATCTAACCTCTCGCCTCGACCCCCACCCCCTCTACGCCTCGCCATGGCGTCCGACACCAAGGCAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACGAGCCCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAGGCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCCTCGCCGAGGATCCGGCCGGCCGCAGAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCCCGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCCGCCCCGCCGCGGCCATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGGAATTATGAAGAAAAGACTCTCTCAGAATCAAGTAGGGGCAGCTGCAGCAATGAGTGTAACTGGAGCAGAAATGGAAGATGTTCAGGTGGAAGAAGCTGCTGATAACATGCAGAATGATGATCCTCTGAGTCGTTTCCTTCCTCCTCCTGTGACTGCAAAATGTTCTGCAGCACTACAGCAAAAGATCAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATAGAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACCAGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATTACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGAAAAAGAGTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAGTTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCATTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACAAGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTATAATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCCTATGTGTTGCTATTTTTACTATAAGCTGCTTTTTGG] [+] EMBL AK101627 [CATTCGCGAATCCTTCACGGTCGGACTCGTCTTCTCCGGTCTCCCCAAGTCGCCAAATCTAACCTCTCGCCTCGACCCCCACCCCCTCTACGCCTCGCCATGGCGTCCGACACCAAGGCAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACGAGCCCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAGGCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCCTCGCCGAGGATCCGGCCGGCCGCAGAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCCCGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCCGCCCCGCCGCGGCCATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGGAATTATGAAGAAAAGACTCTCTCAGAATCAAGTAGGGGCAGCTGCAGCAATGAGTGTAACTGGAGCAGAAATGGAAGATGTTCAGGTGGAAGAAGCTGCTGATAACATGCAGAATGATGATCCTCTGAGTCGTTTCCTTCCTCCTCCTGTGACTGCAAAATGTTCTGCAGCACTACAGCAAAAGATCAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATAGAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACCAGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATTACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGAAAAAGAGTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAGTTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCATTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACAAGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGTTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTATAATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCCTATGTGTTGCTATTTTTACTATAAGCTGCTTTTTGG] consensusID : consensus_13213#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence [AAAGGAACTGGAGAAGAAAAAGAGTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAATTGCAGCAGCTGCTGCTGGTGCACCATTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACAAGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGACCGAAGCCGTGCGGTCTGGACTCTGGACGGCACGGATGGGCGGCCCTGCTATCAACAGTGCTGTGGATCTACTCCAAACAGTATGGTACAGTACACCAATATACCAGTACAGTTTACTGAATAGCCCAACCAACCAACCAAGAGATCAGTTTTCACGGCGCATTACGGCCGTTTTTAACGGTTTAACGCTAGTAGTAATCCTCTTTGCGACC] [-] EMBL CB628912 [AAAGGAACTGGAGAAGAAAAAGAGTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAATTGCAGCAGCTGCTGCTGGTGCACCATTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACAAGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGACCGAAGCCGTGCGGTCTGGACTCTGGACGGCACGGATGGGCGGCCCTGCTATCAACAGTGCTGTGGATCTACTCCAAACAGTATGGTACAGTACACCAATATACCAGTACAGTTTACTGAATAGCCCAACCAACCAACCAAGAGATCAGTTTTCACGGCGCATTACGGCCGTTTTTAACGGTTTAACGCTAGTAGTAATCCTCTTTGCGACC] [+] EMBL CB628911 [ TGGACCAGAAAAAGAGTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAATACCGAAAATTGCAGCAGCTGCTGCTGGTGCACCATTGGTTTCGATATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACAAGAAGTCAAAATGGGATAAGGTTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCGCGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGAAAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCTCTCCTTTTCTTTTGAGACCGAAGCCGTGCGGTCTGGACTCTGGACGGCACGGATGGGCGGCCCTGCTATCAACAGTGCTGTGGATCTACTCCAAACAGTATGGTACAGTACACCAATATACCAGTACAGTTTACTGAATAGCCCAACCAACCAACCAAGAGATCAGTTTTCACGGCGCATTACGGCCGTTTTTAACAGTTTAACGCTAGTAGTAATCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13213#0 TTCATTCGCGAATCCTTCACGGTCGGACTCGTCTTCTCCGGTCTCCCCAAATCGCCAAAT 60 consensus_13213#1 --CATTCGCGAATCCTTCACGGTCGGACTCGTCTTCTCCGGTCTCCCCAAGTCGCCAAAT 58 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 CTAACCTCTCGCCTCGACCCCCACCCCCTCTACGCCTCGCCATGGCGTCCGACACCAAGG 120 consensus_13213#1 CTAACCTCTCGCCTCGACCCCCACCCCCTCTACGCCTCGCCATGGCGTCCGACACCAAGG 118 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 CAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACGAGC 180 consensus_13213#1 CAGTAGCCGCTCTCTTCTCCATGTACAACGACGACGAGGAAGAGGATGACGGCGACGAGC 178 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 CCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAG 240 consensus_13213#1 CCAGACCCCCTTCGCCGCCCGCCGCCGCAACCTCCTCGTCGCCGTCACCTCAGACCGAAG 238 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 GCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCC 300 consensus_13213#1 GCGAGGGCTCAAACCCTAACCCCAACGCTGCCGCTTCTTCGGCGCCCCCATCCCCTCCCC 298 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 TCGCCGAGGATCCGGCCGGCCGCAGAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCC 360 consensus_13213#1 TCGCCGAGGATCCGGCCGGCCGCAGAACCCTAGCCAGCCCCTACCCCTCGCCGGGGCTCC 358 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 CGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCC 420 consensus_13213#1 CGCCGCTGCCTTCGCGCCGCTCGTCCTCGCCCTTCGCGATTTCGTCCCCCTCCCCGCTCC 418 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 GCCCCGCCGCGGCCATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTG 480 consensus_13213#1 GCCCCGCCGCGGCCATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTG 478 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 CTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGA 540 consensus_13213#1 CTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGA 538 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 TCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGGAATTATGAAGAAA 600 consensus_13213#1 TCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGGAATTATGAAGAAA 598 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 AGACTCTCTCAGGTATTGTTCACATACTGACCCCAAATATACGATCAGAAATGTCTCAGC 660 consensus_13213#1 AGACTCTCTCAG------------------------------------------------ 610 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 AGAACGATGCACCTGAACAGAATCAAGTAGGGGCAGCTGCAGCAATGAGTGTAACTGGAG 720 consensus_13213#1 --------------------AATCAAGTAGGGGCAGCTGCAGCAATGAGTGTAACTGGAG 650 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 CAGAAATGGAAGATGTTCAGGTGGAAGAAGCTGCTGATAACATGCAGAATGATGATCCTC 780 consensus_13213#1 CAGAAATGGAAGATGTTCAGGTGGAAGAAGCTGCTGATAACATGCAGAATGATGATCCTC 710 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 TGAGTCGTTTCCTTCCTCCTCCTGTGACTGCAAAATGTTCTGCAGCACTACAGCAAAAGA 840 consensus_13213#1 TGAGTCGTTTCCTTCCTCCTCCTGTGACTGCAAAATGTTCTGCAGCACTACAGCAAAAGA 770 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 TCAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATA 900 consensus_13213#1 TCAACAAGTTCCTTGCGTACAAAAGGGCTGGAAAGAGCTTCAATTCTGAAGTGCGCAATA 830 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 GAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACC 960 consensus_13213#1 GAAAGGACTACAGGAATCCAGACTTTTTGCAGCATGCTGTGCGGTACCAAGAAATTGACC 890 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 AGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATT 1020 consensus_13213#1 AGATAGGGACCTGCTTCAGTAAAGATGTTTTTGATCCTTATGGGTACGATAGAAGCGATT 950 consensus_13213#2 ------------------------------------------------------------ consensus_13213#0 ACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGA 1080 consensus_13213#1 ACTATGATGAGATCGAAGCTGATATGAAGCGTGAAGTTGAGAGAAAGGAACTGGAGAAGA 1010 consensus_13213#2 -------------------------------------------AAAGGAACTGGAGAAGA 17 ***************** consensus_13213#0 AAAAGAGTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAA 1140 consensus_13213#1 AAAAGAGTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAA 1070 consensus_13213#2 AAAAGAGTGGAAAGGTTGACTTTATCACTGGAGGAGTACAAGCTCCAATTAGTGCGGCAA 77 ************************************************************ consensus_13213#0 TACCGAAAATTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCATTGGTTTCGA 1200 consensus_13213#1 TACCGAAAGTTGCAGCTGCTGTATCAGCAGCAGCTGCTGCTGGTGCACCATTGGTTTCGA 1130 consensus_13213#2 TACCGAAAATTGCAGC---------------AGCTGCTGCTGGTGCACCATTGGTTTCGA 122 ******** ******* ***************************** consensus_13213#0 TATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACAAGAAGTCAAAATGGGATAAGG 1260 consensus_13213#1 TATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACAAGAAGTCAAAATGGGATAAGG 1190 consensus_13213#2 TATCGGGAGAAGGCGTACAGAAAGAGGCTAGGCCAAACAAGAAGTCAAAATGGGATAAGG 182 ************************************************************ consensus_13213#0 TTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCG 1320 consensus_13213#1 TTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCG 1250 consensus_13213#2 TTGATGGGGATATTAAGAACCCTGTGGCTCCAAGTGGACTTGATAATTTGTCAGCAGCCG 242 ************************************************************ consensus_13213#0 CGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGA 1380 consensus_13213#1 CGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGA 1310 consensus_13213#2 CGCTTCTAACTTCAGCAAATGTTGGTGCTGGATACGCTGCTTTTGCGCAACAAAAGAGGA 302 ************************************************************ consensus_13213#0 AAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCT 1440 consensus_13213#1 AAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCT 1370 consensus_13213#2 AAGAAGCTGAAGAAAAGAAAACAAGCGATCATAAGTCAGACAGAAGATCGTAGTGCTTCT 362 ************************************************************ consensus_13213#0 CTCCTTTTCTTTTGAG-TTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTAT 1499 consensus_13213#1 CTCCTTTTCTTTTGAG-TTAAGGATGTACTATTTGGAGGTTTTCAATTACATAGCCTTAT 1429 consensus_13213#2 CTCCTTTTCTTTTGAGACCGAAGCCGTGCGGTCTGGA--CTCTGGACGGCACGGATGGGC 420 **************** * * ** * * **** * * * ** * consensus_13213#0 AATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCC 1559 consensus_13213#1 AATGTGAAAAAAAAAACCTTCAAGAATTGGCCAAAAAACATGCTTACACAATGTGTTCCC 1489 consensus_13213#2 GGCCCTGCTATCAACAGTGCTGTGGATCTACTCCAAA-CAGTATGGTACAGTACA---CC 476 * ** * * ** * *** ** * *** * ** consensus_13213#0 TATGTGTTGCTATT-TTTACT--ATAAGCTGCTTTTTGGGCGTATTGGCATTTCTCAAGG 1616 consensus_13213#1 TATGTGTTGCTATT-TTTACT--ATAAGCTGCTTTTTGG--------------------- 1525 consensus_13213#2 AATATACCAGTACAGTTTACTGAATAGCCCAACCAACCAACCAAGAGATCAGTTTTCACG 536 ** * ** ****** *** * consensus_13213#0 GTGACATACTAACCTCATCTTGCCATGTTTAGGACATTTTCTTGATTTTGGGCGGATTTA 1676 consensus_13213#1 ------------------------------------------------------------ consensus_13213#2 GCGCATTACGGCCGT--TTTTAACGGTTTAACGCTAGTAGTAATCCTCTTTGCGACC--- 591 consensus_13213#0 AACTCAATAAATTTCCGCTTTCCCGTCGGTAAAAAAAAA 1715 consensus_13213#1 --------------------------------------- consensus_13213#2 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||